data_KWO
# 
_chem_comp.id                                    KWO 
_chem_comp.name                                  "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-[4-azanyl-5-(4-phenylphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H33 N9 O13 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-[4-azanyl-5-(4-phenylphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-07 
_chem_comp.pdbx_modified_date                    2022-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        825.615 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KWO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A2J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KWO C13 C1  C 0 1 N N R 3.914  -34.462 -2.996 -3.229 1.643  -0.867 C13 KWO 1  
KWO C17 C2  C 0 1 N N N 5.824  -34.016 -0.569 -6.038 0.511  0.464  C17 KWO 2  
KWO C20 C3  C 0 1 N N R 3.044  -35.197 -2.035 -3.746 2.865  -0.087 C20 KWO 3  
KWO C22 C4  C 0 1 Y N N 1.854  -33.152 -1.227 -3.644 2.406  2.393  C22 KWO 4  
KWO C24 C5  C 0 1 Y N N -0.179 -33.747 -1.647 -1.723 3.263  2.914  C24 KWO 5  
KWO C02 C6  C 0 1 N N R 5.536  -29.011 -3.080 -1.324 -3.205 0.735  C02 KWO 6  
KWO C03 C7  C 0 1 N N S 5.676  -30.458 -3.152 -2.326 -2.330 -0.044 C03 KWO 7  
KWO C08 C8  C 0 1 N N R 6.278  -30.666 -4.498 -2.023 -2.612 -1.525 C08 KWO 8  
KWO C09 C9  C 0 1 N N N 6.108  -32.061 -5.093 -2.092 -1.319 -2.335 C09 KWO 9  
KWO C14 C10 C 0 1 N N R 5.264  -34.884 -2.748 -4.503 0.993  -1.457 C14 KWO 10 
KWO C16 C11 C 0 1 N N R 5.239  -35.161 -1.267 -5.649 1.553  -0.589 C16 KWO 11 
KWO C25 C12 C 0 1 Y N N 0.651  -34.759 -2.017 -1.906 3.460  1.541  C25 KWO 12 
KWO C27 C13 C 0 1 N N N -1.288 -36.158 -2.778 0.140  4.523  1.398  C27 KWO 13 
KWO C30 C14 C 0 1 N N N -1.675 -33.887 -1.832 -0.533 3.739  3.513  C30 KWO 14 
KWO C35 C15 C 0 1 N N R 4.966  -28.707 -4.419 -0.370 -3.758 -0.337 C35 KWO 15 
KWO C37 C16 C 0 1 Y N N 2.947  -29.941 -4.650 1.692  -2.329 -0.455 C37 KWO 16 
KWO C38 C17 C 0 1 Y N N 1.596  -29.741 -4.490 2.945  -2.316 0.064  C38 KWO 17 
KWO C39 C18 C 0 1 Y N N 0.595  -30.843 -4.736 3.999  -1.306 -0.190 C39 KWO 18 
KWO C40 C19 C 0 1 Y N N -0.744 -30.627 -5.027 4.680  -0.724 0.880  C40 KWO 19 
KWO C41 C20 C 0 1 Y N N -1.584 -31.701 -5.237 5.663  0.211  0.644  C41 KWO 20 
KWO C42 C21 C 0 1 Y N N -1.027 -32.940 -5.145 5.979  0.575  -0.664 C42 KWO 21 
KWO C43 C22 C 0 1 Y N N -1.850 -34.140 -5.388 7.038  1.582  -0.918 C43 KWO 22 
KWO C44 C23 C 0 1 Y N N -3.128 -34.165 -4.925 7.356  1.948  -2.225 C44 KWO 23 
KWO C45 C24 C 0 1 Y N N -3.848 -35.288 -5.177 8.343  2.885  -2.455 C45 KWO 24 
KWO C46 C25 C 0 1 Y N N -3.311 -36.353 -5.892 9.016  3.460  -1.392 C46 KWO 25 
KWO C47 C26 C 0 1 Y N N -2.029 -36.286 -6.369 8.705  3.100  -0.093 C47 KWO 26 
KWO C48 C27 C 0 1 Y N N -1.293 -35.169 -6.113 7.716  2.169  0.149  C48 KWO 27 
KWO C49 C28 C 0 1 Y N N 0.282  -33.158 -4.852 5.299  -0.007 -1.734 C49 KWO 28 
KWO C50 C29 C 0 1 Y N N 1.097  -32.101 -4.636 4.316  -0.942 -1.499 C50 KWO 29 
KWO C51 C30 C 0 1 Y N N 1.375  -28.422 -4.106 3.052  -3.500 0.926  C51 KWO 30 
KWO C52 C31 C 0 1 Y N N 2.629  -27.872 -4.033 1.809  -4.152 0.852  C52 KWO 31 
KWO C54 C32 C 0 1 Y N N 1.640  -25.860 -3.405 2.606  -5.758 2.295  C54 KWO 32 
KWO C56 C33 C 0 1 Y N N 0.237  -27.623 -3.811 4.056  -4.054 1.731  C56 KWO 33 
KWO N21 N1  N 0 1 Y N N 1.891  -34.397 -1.759 -3.121 2.908  1.237  N21 KWO 34 
KWO N23 N2  N 0 1 Y N N 0.562  -32.751 -1.156 -2.821 2.619  3.378  N23 KWO 35 
KWO N26 N3  N 0 1 N N N 0.137  -36.017 -2.598 -0.960 4.084  0.828  N26 KWO 36 
KWO N28 N4  N 0 1 N N N -1.743 -37.409 -3.350 1.082  5.157  0.627  N28 KWO 37 
KWO N29 N5  N 0 1 N N N -2.169 -35.081 -2.386 0.379  4.354  2.729  N29 KWO 38 
KWO N36 N6  N 0 1 Y N N 3.566  -28.825 -4.362 1.013  -3.420 0.012  N36 KWO 39 
KWO N53 N7  N 0 1 Y N N 2.725  -26.567 -3.680 1.635  -5.272 1.552  N53 KWO 40 
KWO N55 N8  N 0 1 Y N N 0.412  -26.370 -3.464 3.788  -5.176 2.393  N55 KWO 41 
KWO N57 N9  N 0 1 N N N -1.104 -28.169 -3.867 5.296  -3.449 1.834  N57 KWO 42 
KWO O01 O1  O 0 1 N N N 6.797  -28.320 -2.975 -2.005 -4.275 1.394  O01 KWO 43 
KWO O04 O2  O 0 1 N N N 6.528  -30.886 -2.106 -3.668 -2.697 0.271  O04 KWO 44 
KWO O06 O3  O 0 1 N N N 4.882  -30.343 -0.090 -6.184 -2.599 0.086  O06 KWO 45 
KWO O07 O4  O 0 1 N N N 6.968  -31.646 0.155  -4.848 -1.544 -1.778 O07 KWO 46 
KWO O10 O5  O 0 1 N N N 4.759  -32.436 -5.074 -1.230 -0.336 -1.761 O10 KWO 47 
KWO O12 O6  O 0 1 N N N 3.577  -34.816 -4.311 -2.343 2.043  -1.910 O12 KWO 48 
KWO O15 O7  O 0 1 N N N 5.581  -36.034 -3.536 -4.674 1.380  -2.822 O15 KWO 49 
KWO O18 O8  O 0 1 N N N 5.052  -32.865 -0.771 -4.981 -0.442 0.605  O18 KWO 50 
KWO O19 O9  O 0 1 N N N 3.813  -35.338 -0.879 -5.161 2.733  0.050  O19 KWO 51 
KWO O31 O10 O 0 1 N N N -2.399 -32.996 -1.509 -0.335 3.597  4.708  O31 KWO 52 
KWO O32 O11 O 0 1 N N N 5.218  -34.715 -6.303 -1.032 1.081  -3.842 O32 KWO 53 
KWO O33 O12 O 0 1 N N N 2.997  -33.841 -6.263 0.276  1.820  -1.813 O33 KWO 54 
KWO O34 O13 O 0 1 N N N 5.604  -29.663 -5.293 -0.706 -3.169 -1.594 O34 KWO 55 
KWO P05 P1  P 0 1 N N N 5.783  -31.379 -0.705 -4.948 -1.837 -0.198 P05 KWO 56 
KWO P11 P2  P 0 1 N N N 4.244  -33.959 -5.469 -1.081 1.151  -2.364 P11 KWO 57 
KWO H1  H1  H 0 1 N N N 3.812  -33.378 -2.839 -2.739 0.946  -0.191 H1  KWO 58 
KWO H2  H2  H 0 1 N N N 5.870  -34.235 0.508  -6.210 1.007  1.419  H2  KWO 59 
KWO H3  H3  H 0 1 N N N 6.840  -33.841 -0.952 -6.948 0.000  0.150  H3  KWO 60 
KWO H4  H4  H 0 1 N N N 2.757  -36.173 -2.453 -3.513 3.777  -0.636 H4  KWO 61 
KWO H5  H5  H 0 1 N N N 2.711  -32.575 -0.912 -4.600 1.911  2.479  H5  KWO 62 
KWO H6  H6  H 0 1 N N N 4.842  -28.713 -2.280 -0.775 -2.602 1.458  H6  KWO 63 
KWO H7  H7  H 0 1 N N N 4.693  -30.948 -3.094 -2.158 -1.277 0.181  H7  KWO 64 
KWO H8  H8  H 0 1 N N N 7.353  -30.436 -4.449 -2.742 -3.333 -1.916 H8  KWO 65 
KWO H9  H9  H 0 1 N N N 6.693  -32.781 -4.502 -1.782 -1.518 -3.361 H9  KWO 66 
KWO H10 H10 H 0 1 N N N 6.470  -32.059 -6.132 -3.116 -0.947 -2.334 H10 KWO 67 
KWO H11 H11 H 0 1 N N N 5.968  -34.065 -2.957 -4.452 -0.092 -1.369 H11 KWO 68 
KWO H12 H12 H 0 1 N N N 5.807  -36.077 -1.048 -6.506 1.790  -1.215 H12 KWO 69 
KWO H13 H13 H 0 1 N N N 5.252  -27.686 -4.711 -0.477 -4.841 -0.401 H13 KWO 70 
KWO H14 H14 H 0 1 N N N 3.417  -30.862 -4.961 1.290  -1.588 -1.130 H14 KWO 71 
KWO H15 H15 H 0 1 N N N -1.128 -29.620 -5.089 4.434  -1.006 1.894  H15 KWO 72 
KWO H16 H16 H 0 1 N N N -2.631 -31.566 -5.463 6.190  0.661  1.473  H16 KWO 73 
KWO H17 H17 H 0 1 N N N -3.550 -33.332 -4.383 6.832  1.500  -3.055 H17 KWO 74 
KWO H18 H18 H 0 1 N N N -4.863 -35.356 -4.813 8.591  3.170  -3.467 H18 KWO 75 
KWO H19 H19 H 0 1 N N N -3.907 -37.236 -6.072 9.788  4.193  -1.577 H19 KWO 76 
KWO H20 H20 H 0 1 N N N -1.610 -37.103 -6.937 9.230  3.556  0.733  H20 KWO 77 
KWO H21 H21 H 0 1 N N N -0.279 -35.091 -6.476 7.473  1.888  1.164  H21 KWO 78 
KWO H22 H22 H 0 1 N N N 0.667  -34.165 -4.792 5.544  0.276  -2.747 H22 KWO 79 
KWO H23 H23 H 0 1 N N N 2.136  -32.255 -4.387 3.793  -1.395 -2.328 H23 KWO 80 
KWO H24 H24 H 0 1 N N N 1.756  -24.825 -3.120 2.429  -6.668 2.848  H24 KWO 81 
KWO H25 H25 H 0 1 N N N -1.081 -38.116 -3.596 0.930  5.277  -0.324 H25 KWO 82 
KWO H26 H26 H 0 1 N N N -2.720 -37.565 -3.499 1.899  5.487  1.032  H26 KWO 83 
KWO H27 H27 H 0 1 N N N -3.155 -35.188 -2.512 1.202  4.690  3.118  H27 KWO 84 
KWO H28 H28 H 0 1 N N N -1.763 -27.461 -3.614 5.479  -2.631 1.346  H28 KWO 85 
KWO H29 H29 H 0 1 N N N -1.296 -28.487 -4.796 5.983  -3.843 2.395  H29 KWO 86 
KWO H30 H30 H 0 1 N N N 7.186  -28.497 -2.126 -1.421 -4.872 1.880  H30 KWO 87 
KWO H31 H31 H 0 1 N N N 6.923  -31.104 0.934  -4.909 -2.337 -2.329 H31 KWO 88 
KWO H32 H32 H 0 1 N N N 6.476  -36.301 -3.362 -5.458 1.001  -3.242 H32 KWO 89 
KWO H33 H33 H 0 1 N N N 3.114  -34.269 -7.103 1.078  1.335  -2.050 H33 KWO 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KWO C47 C48 DOUB Y N 1  
KWO C47 C46 SING Y N 2  
KWO O32 P11 DOUB N N 3  
KWO O33 P11 SING N N 4  
KWO C48 C43 SING Y N 5  
KWO C46 C45 DOUB Y N 6  
KWO P11 O10 SING N N 7  
KWO P11 O12 SING N N 8  
KWO C43 C42 SING N N 9  
KWO C43 C44 DOUB Y N 10 
KWO O34 C08 SING N N 11 
KWO O34 C35 SING N N 12 
KWO C41 C42 DOUB Y N 13 
KWO C41 C40 SING Y N 14 
KWO C45 C44 SING Y N 15 
KWO C42 C49 SING Y N 16 
KWO C09 O10 SING N N 17 
KWO C09 C08 SING N N 18 
KWO C40 C39 DOUB Y N 19 
KWO C49 C50 DOUB Y N 20 
KWO C39 C50 SING Y N 21 
KWO C39 C38 SING N N 22 
KWO C37 C38 DOUB Y N 23 
KWO C37 N36 SING Y N 24 
KWO C08 C03 SING N N 25 
KWO C38 C51 SING Y N 26 
KWO C35 N36 SING N N 27 
KWO C35 C02 SING N N 28 
KWO N36 C52 SING Y N 29 
KWO O12 C13 SING N N 30 
KWO C51 C52 DOUB Y N 31 
KWO C51 C56 SING Y N 32 
KWO C52 N53 SING Y N 33 
KWO N57 C56 SING N N 34 
KWO C56 N55 DOUB Y N 35 
KWO N53 C54 DOUB Y N 36 
KWO O15 C14 SING N N 37 
KWO N55 C54 SING Y N 38 
KWO N28 C27 SING N N 39 
KWO C03 C02 SING N N 40 
KWO C03 O04 SING N N 41 
KWO C02 O01 SING N N 42 
KWO C13 C14 SING N N 43 
KWO C13 C20 SING N N 44 
KWO C27 N26 DOUB N N 45 
KWO C27 N29 SING N N 46 
KWO C14 C16 SING N N 47 
KWO N26 C25 SING N N 48 
KWO N29 C30 SING N N 49 
KWO O04 P05 SING N N 50 
KWO C20 N21 SING N N 51 
KWO C20 O19 SING N N 52 
KWO C25 N21 SING Y N 53 
KWO C25 C24 DOUB Y N 54 
KWO C30 C24 SING N N 55 
KWO C30 O31 DOUB N N 56 
KWO N21 C22 SING Y N 57 
KWO C24 N23 SING Y N 58 
KWO C16 O19 SING N N 59 
KWO C16 C17 SING N N 60 
KWO C22 N23 DOUB Y N 61 
KWO O18 P05 SING N N 62 
KWO O18 C17 SING N N 63 
KWO P05 O06 DOUB N N 64 
KWO P05 O07 SING N N 65 
KWO C13 H1  SING N N 66 
KWO C17 H2  SING N N 67 
KWO C17 H3  SING N N 68 
KWO C20 H4  SING N N 69 
KWO C22 H5  SING N N 70 
KWO C02 H6  SING N N 71 
KWO C03 H7  SING N N 72 
KWO C08 H8  SING N N 73 
KWO C09 H9  SING N N 74 
KWO C09 H10 SING N N 75 
KWO C14 H11 SING N N 76 
KWO C16 H12 SING N N 77 
KWO C35 H13 SING N N 78 
KWO C37 H14 SING N N 79 
KWO C40 H15 SING N N 80 
KWO C41 H16 SING N N 81 
KWO C44 H17 SING N N 82 
KWO C45 H18 SING N N 83 
KWO C46 H19 SING N N 84 
KWO C47 H20 SING N N 85 
KWO C48 H21 SING N N 86 
KWO C49 H22 SING N N 87 
KWO C50 H23 SING N N 88 
KWO C54 H24 SING N N 89 
KWO N28 H25 SING N N 90 
KWO N28 H26 SING N N 91 
KWO N29 H27 SING N N 92 
KWO N57 H28 SING N N 93 
KWO N57 H29 SING N N 94 
KWO O01 H30 SING N N 95 
KWO O07 H31 SING N N 96 
KWO O15 H32 SING N N 97 
KWO O33 H33 SING N N 98 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KWO InChI            InChI                1.06  "InChI=1S/C33H33N9O13P2/c34-27-21-18(17-8-6-16(7-9-17)15-4-2-1-3-5-15)10-41(28(21)37-13-36-27)31-24(44)25-20(53-31)12-51-57(48,49)55-26-23(43)19(11-50-56(46,47)54-25)52-32(26)42-14-38-22-29(42)39-33(35)40-30(22)45/h1-10,13-14,19-20,23-26,31-32,43-44H,11-12H2,(H,46,47)(H,48,49)(H2,34,36,37)(H3,35,39,40,45)/t19-,20-,23-,24-,25-,26-,31-,32-/m1/s1" 
KWO InChIKey         InChI                1.06  KGCQPNZLZFAINN-YHOFCQOESA-N                                                                                                                                                                                                                                                                                                                                
KWO SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]3[C@@H]4O)n6cc(c7ccc(cc7)c8ccccc8)c9c(N)ncnc69"                                                                                                                                                                                                         
KWO SMILES           CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6cc(c7ccc(cc7)c8ccccc8)c9c(N)ncnc69"                                                                                                                                                                                                                        
KWO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)c3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@H]6[C@H](O5)COP(=O)(O[C@@H]7[C@@H]([C@@H](COP(=O)(O6)O)O[C@H]7n8cnc9c8N=C(NC9=O)N)O)O)O"                                                                                                                                                                                                            
KWO SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)c3cn(c4c3c(ncn4)N)C5C(C6C(O5)COP(=O)(OC7C(C(COP(=O)(O6)O)OC7n8cnc9c8N=C(NC9=O)N)O)O)O"                                                                                                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           KWO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-[4-azanyl-5-(4-phenylphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KWO "Create component"  2022-06-07 PDBE 
KWO "Modify descriptor" 2022-08-22 RCSB 
KWO "Initial release"   2022-10-12 RCSB 
# 
