data_GYO
#

_chem_comp.id                                   GYO
_chem_comp.name                                 "~{N}-[(1~{S},2~{S})-2-(2-methoxyphenyl)cyclopropyl]-3~{H}-benzimidazole-5-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H17 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-09
_chem_comp.pdbx_modified_date                   2021-12-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       307.346
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GYO
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7D8E
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GYO  C01  C1   C  0  1  Y  N  N  10.581   -9.158  127.774  -4.040   1.118  -0.142  C01  GYO   1  
GYO  C02  C2   C  0  1  Y  N  N   9.251   -9.371  128.109  -4.218  -0.156   0.427  C02  GYO   2  
GYO  C04  C3   C  0  1  Y  N  N   9.773  -10.693  126.464  -6.108   0.980   0.512  C04  GYO   3  
GYO  C06  C4   C  0  1  Y  N  N  11.454   -8.100  128.561  -2.788   1.482  -0.652  C06  GYO   4  
GYO  C07  C5   C  0  1  Y  N  N  10.822   -7.303  129.673  -1.748   0.605  -0.597  C07  GYO   5  
GYO  C08  C6   C  0  1  Y  N  N   9.402   -7.532  130.056  -1.918  -0.666  -0.032  C08  GYO   6  
GYO  C09  C7   C  0  1  Y  N  N   8.588   -8.553  129.277  -3.158  -1.044   0.481  C09  GYO   7  
GYO  C10  C8   C  0  1  N  N  N   8.839   -6.660  131.208  -0.782  -1.607   0.022  C10  GYO   8  
GYO  C13  C9   C  0  1  N  N  S   6.745   -8.111  131.802   1.546  -2.177  -0.420  C13  GYO   9  
GYO  C14  C10  C  0  1  N  N  S   5.449   -8.470  132.595   2.956  -1.583  -0.428  C14  GYO  10  
GYO  C15  C11  C  0  1  N  N  N   6.790   -9.023  133.011   2.421  -2.299  -1.670  C15  GYO  11  
GYO  C16  C12  C  0  1  Y  N  N   4.470   -7.981  133.689   3.078  -0.082  -0.490  C16  GYO  12  
GYO  C17  C13  C  0  1  Y  N  N   4.858   -8.030  135.174   2.551   0.611  -1.562  C17  GYO  13  
GYO  C18  C14  C  0  1  Y  N  N   3.872   -7.559  136.246   2.662   1.988  -1.619  C18  GYO  14  
GYO  C19  C15  C  0  1  Y  N  N   2.476   -7.073  135.821   3.302   2.675  -0.604  C19  GYO  15  
GYO  C20  C16  C  0  1  Y  N  N   2.079   -7.048  134.333   3.831   1.986   0.470  C20  GYO  16  
GYO  C21  C17  C  0  1  Y  N  N   3.081   -7.511  133.261   3.716   0.605   0.533  C21  GYO  17  
GYO  C23  C18  C  0  1  N  N  N   1.490   -8.106  131.655   4.873   0.698   2.607  C23  GYO  18  
GYO  N03  N1   N  0  1  Y  N  N   8.775  -10.317  127.314  -5.538  -0.211   0.831  N03  GYO  19  
GYO  N05  N2   N  0  1  Y  N  N  10.889   -9.973  126.770  -5.234   1.756  -0.062  N05  GYO  20  
GYO  N11  N3   N  0  1  N  N  N   7.614   -6.926  131.980   0.418  -1.243  -0.473  N11  GYO  21  
GYO  O12  O1   O  0  1  N  N  N   9.455   -5.671  131.466  -0.928  -2.710   0.512  O12  GYO  22  
GYO  O22  O2   O  0  1  N  N  N   2.753   -7.508  131.888   4.230  -0.074   1.591  O22  GYO  23  
GYO  H1   H1   H  0  1  N  N  N   9.693  -11.434  125.683  -7.139   1.242   0.700  H1   GYO  24  
GYO  H2   H2   H  0  1  N  N  N  12.492   -7.950  128.304  -2.647   2.459  -1.090  H2   GYO  25  
GYO  H3   H3   H  0  1  N  N  N  11.404   -6.559  130.197  -0.784   0.891  -0.992  H3   GYO  26  
GYO  H4   H4   H  0  1  N  N  N   7.550   -8.717  129.527  -3.290  -2.023   0.917  H4   GYO  27  
GYO  H5   H5   H  0  1  N  N  N   6.835   -8.623  130.833   1.383  -3.078   0.171  H5   GYO  28  
GYO  H6   H6   H  0  1  N  N  N   4.930   -9.253  132.023   3.720  -2.093   0.157  H6   GYO  29  
GYO  H7   H7   H  0  1  N  N  N   7.002  -10.094  132.877   2.833  -3.282  -1.901  H7   GYO  30  
GYO  H8   H8   H  0  1  N  N  N   7.259   -8.670  133.941   2.157  -1.686  -2.531  H8   GYO  31  
GYO  H9   H9   H  0  1  N  N  N   5.831   -8.398  135.463   2.051   0.077  -2.357  H9   GYO  32  
GYO  H10  H10  H  0  1  N  N  N   4.153   -7.568  137.289   2.250   2.528  -2.459  H10  GYO  33  
GYO  H11  H11  H  0  1  N  N  N   1.770   -6.747  136.570   3.388   3.750  -0.651  H11  GYO  34  
GYO  H12  H12  H  0  1  N  N  N   1.097   -6.705  134.042   4.331   2.523   1.263  H12  GYO  35  
GYO  H13  H13  H  0  1  N  N  N   1.268   -8.086  130.578   5.238   0.035   3.392  H13  GYO  36  
GYO  H14  H14  H  0  1  N  N  N   1.507   -9.148  132.007   5.711   1.244   2.174  H14  GYO  37  
GYO  H15  H15  H  0  1  N  N  N   0.714   -7.548  132.200   4.160   1.405   3.032  H15  GYO  38  
GYO  H16  H16  H  0  1  N  N  N   7.847  -10.690  127.333  -5.976  -0.960   1.265  H16  GYO  39  
GYO  H18  H18  H  0  1  N  N  N   7.350   -6.258  132.675   0.535  -0.363  -0.864  H18  GYO  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GYO  C04  N05  DOUB  Y  N   1  
GYO  C04  N03  SING  Y  N   2  
GYO  N05  C01  SING  Y  N   3  
GYO  N03  C02  SING  Y  N   4  
GYO  C01  C02  DOUB  Y  N   5  
GYO  C01  C06  SING  Y  N   6  
GYO  C02  C09  SING  Y  N   7  
GYO  C06  C07  DOUB  Y  N   8  
GYO  C09  C08  DOUB  Y  N   9  
GYO  C07  C08  SING  Y  N  10  
GYO  C08  C10  SING  N  N  11  
GYO  C10  O12  DOUB  N  N  12  
GYO  C10  N11  SING  N  N  13  
GYO  C23  O22  SING  N  N  14  
GYO  C13  N11  SING  N  N  15  
GYO  C13  C14  SING  N  N  16  
GYO  C13  C15  SING  N  N  17  
GYO  O22  C21  SING  N  N  18  
GYO  C14  C15  SING  N  N  19  
GYO  C14  C16  SING  N  N  20  
GYO  C21  C16  DOUB  Y  N  21  
GYO  C21  C20  SING  Y  N  22  
GYO  C16  C17  SING  Y  N  23  
GYO  C20  C19  DOUB  Y  N  24  
GYO  C17  C18  DOUB  Y  N  25  
GYO  C19  C18  SING  Y  N  26  
GYO  C04  H1   SING  N  N  27  
GYO  C06  H2   SING  N  N  28  
GYO  C07  H3   SING  N  N  29  
GYO  C09  H4   SING  N  N  30  
GYO  C13  H5   SING  N  N  31  
GYO  C14  H6   SING  N  N  32  
GYO  C15  H7   SING  N  N  33  
GYO  C15  H8   SING  N  N  34  
GYO  C17  H9   SING  N  N  35  
GYO  C18  H10  SING  N  N  36  
GYO  C19  H11  SING  N  N  37  
GYO  C20  H12  SING  N  N  38  
GYO  C23  H13  SING  N  N  39  
GYO  C23  H14  SING  N  N  40  
GYO  C23  H15  SING  N  N  41  
GYO  N03  H16  SING  N  N  42  
GYO  N11  H18  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GYO  InChI             InChI                 1.03   "InChI=1S/C18H17N3O2/c1-23-17-5-3-2-4-12(17)13-9-15(13)21-18(22)11-6-7-14-16(8-11)20-10-19-14/h2-8,10,13,15H,9H2,1H3,(H,19,20)(H,21,22)/t13-,15-/m0/s1"  
GYO  InChIKey          InChI                 1.03   ZKYVGLRMGWYWNE-ZFWWWQNUSA-N  
GYO  SMILES_CANONICAL  CACTVS                3.385  "COc1ccccc1[C@@H]2C[C@@H]2NC(=O)c3ccc4nc[nH]c4c3"  
GYO  SMILES            CACTVS                3.385  "COc1ccccc1[CH]2C[CH]2NC(=O)c3ccc4nc[nH]c4c3"  
GYO  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1ccccc1[C@@H]2C[C@@H]2NC(=O)c3ccc4c(c3)[nH]cn4"  
GYO  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1ccccc1C2CC2NC(=O)c3ccc4c(c3)[nH]cn4"  
#
_pdbx_chem_comp_identifier.comp_id          GYO
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[(1~{S},2~{S})-2-(2-methoxyphenyl)cyclopropyl]-3~{H}-benzimidazole-5-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GYO  "Create component"  2020-10-09  PDBJ  
GYO  "Initial release"   2021-12-08  RCSB  
##
