data_F9O
# 
_chem_comp.id                                    F9O 
_chem_comp.name                                  "(2R,3S)-2-[3-[4,5-bis(chloranyl)benzimidazol-1-yl]propyl]piperidin-3-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H19 Cl2 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-04-20 
_chem_comp.pdbx_modified_date                    2023-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        328.237 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F9O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7BX6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F9O C4  C1  C  0 1 N N R 40.547 14.431 105.016 -4.101 0.216  -0.109 C4  F9O 1  
F9O C5  C2  C  0 1 N N N 40.752 15.807 104.391 -3.137 -0.067 1.046  C5  F9O 2  
F9O C6  C3  C  0 1 N N N 40.356 17.005 105.218 -1.756 -0.411 0.484  C6  F9O 3  
F9O C3  C4  C  0 1 N N N 41.182 12.153 104.242 -5.183 -0.770 -2.040 C3  F9O 4  
F9O C2  C5  C  0 1 N N N 41.789 11.849 105.593 -6.561 -0.334 -1.536 C2  F9O 5  
F9O C1  C6  C  0 1 N N N 41.090 12.650 106.682 -6.414 0.943  -0.704 C1  F9O 6  
F9O N   N1  N  0 1 N N N 41.141 13.596 103.965 -4.294 -1.009 -0.895 N   F9O 7  
F9O C   C7  C  0 1 N N S 41.261 14.108 106.319 -5.446 0.681  0.453  C   F9O 8  
F9O O   O1  O  0 1 N N N 40.839 14.905 107.417 -5.260 1.884  1.201  O   F9O 9  
F9O C10 C8  C  0 1 Y N N 41.941 19.543 103.033 1.515  -0.124 0.739  C10 F9O 10 
F9O C11 C9  C  0 1 Y N N 41.598 19.383 101.693 1.606  1.260  0.744  C11 F9O 11 
F9O C12 C10 C  0 1 Y N N 42.351 20.041 100.731 2.757  1.875  0.301  C12 F9O 12 
F9O C13 C11 C  0 1 Y N N 43.412 20.834 101.126 3.829  1.117  -0.152 C13 F9O 13 
F9O C14 C12 C  0 1 Y N N 43.746 20.994 102.459 3.757  -0.259 -0.165 C14 F9O 14 
F9O C7  C13 C  0 1 N N N 40.179 18.194 104.275 -0.792 -0.694 1.638  C7  F9O 15 
F9O C8  C14 C  0 1 Y N N 42.088 19.580 105.223 1.016  -2.272 0.864  C8  F9O 16 
F9O C9  C15 C  0 1 Y N N 43.002 20.344 103.457 2.595  -0.897 0.282  C9  F9O 17 
F9O N1  N2  N  0 1 Y N N 41.366 19.055 104.185 0.530  -1.023 1.100  N1  F9O 18 
F9O N2  N3  N  0 1 Y N N 43.075 20.358 104.840 2.223  -2.199 0.385  N2  F9O 19 
F9O CL  CL1 CL 0 0 N N N 45.061 21.999 102.930 5.102  -1.198 -0.734 CL  F9O 20 
F9O CL1 CL2 CL 0 0 N N N 44.332 21.664 99.890  5.271  1.909  -0.707 CL1 F9O 21 
F9O H1  H1  H  0 1 N N N 39.472 14.222 105.116 -3.685 0.995  -0.747 H1  F9O 22 
F9O H2  H2  H  0 1 N N N 41.822 15.907 104.154 -3.061 0.816  1.680  H2  F9O 23 
F9O H3  H3  H  0 1 N N N 40.166 15.839 103.461 -3.510 -0.905 1.633  H3  F9O 24 
F9O H4  H4  H  0 1 N N N 41.143 17.227 105.954 -1.832 -1.294 -0.151 H4  F9O 25 
F9O H5  H5  H  0 1 N N N 39.411 16.801 105.742 -1.383 0.428  -0.104 H5  F9O 26 
F9O H6  H6  H  0 1 N N N 40.156 11.758 104.218 -5.282 -1.688 -2.620 H6  F9O 27 
F9O H7  H7  H  0 1 N N N 41.783 11.660 103.464 -4.761 0.014  -2.669 H7  F9O 28 
F9O H8  H8  H  0 1 N N N 41.679 10.775 105.806 -7.215 -0.142 -2.386 H8  F9O 29 
F9O H9  H9  H  0 1 N N N 42.857 12.113 105.578 -6.988 -1.124 -0.918 H9  F9O 30 
F9O H10 H10 H  0 1 N N N 40.022 12.390 106.719 -6.022 1.743  -1.332 H10 F9O 31 
F9O H11 H11 H  0 1 N N N 41.551 12.445 107.660 -7.387 1.234  -0.308 H11 F9O 32 
F9O H12 H12 H  0 1 N N N 42.080 13.907 103.820 -4.643 -1.759 -0.317 H12 F9O 33 
F9O H14 H14 H  0 1 N N N 42.335 14.281 106.154 -5.857 -0.092 1.102  H14 F9O 34 
F9O H15 H15 H  0 1 N N N 41.322 14.653 108.196 -6.074 2.237  1.587  H15 F9O 35 
F9O H16 H16 H  0 1 N N N 40.763 18.760 101.408 0.776  1.856  1.095  H16 F9O 36 
F9O H17 H17 H  0 1 N N N 42.110 19.935 99.684  2.827  2.952  0.306  H17 F9O 37 
F9O H18 H18 H  0 1 N N N 39.336 18.801 104.635 -0.716 0.189  2.273  H18 F9O 38 
F9O H19 H19 H  0 1 N N N 39.951 17.810 103.270 -1.165 -1.533 2.226  H19 F9O 39 
F9O H20 H20 H  0 1 N N N 41.867 19.374 106.260 0.478  -3.190 1.047  H20 F9O 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F9O CL1 C13 SING N N 1  
F9O C12 C13 DOUB Y N 2  
F9O C12 C11 SING Y N 3  
F9O C13 C14 SING Y N 4  
F9O C11 C10 DOUB Y N 5  
F9O C14 CL  SING N N 6  
F9O C14 C9  DOUB Y N 7  
F9O C10 C9  SING Y N 8  
F9O C10 N1  SING Y N 9  
F9O C9  N2  SING Y N 10 
F9O N   C3  SING N N 11 
F9O N   C4  SING N N 12 
F9O N1  C7  SING N N 13 
F9O N1  C8  SING Y N 14 
F9O C3  C2  SING N N 15 
F9O C7  C6  SING N N 16 
F9O C5  C4  SING N N 17 
F9O C5  C6  SING N N 18 
F9O N2  C8  DOUB Y N 19 
F9O C4  C   SING N N 20 
F9O C2  C1  SING N N 21 
F9O C   C1  SING N N 22 
F9O C   O   SING N N 23 
F9O C4  H1  SING N N 24 
F9O C5  H2  SING N N 25 
F9O C5  H3  SING N N 26 
F9O C6  H4  SING N N 27 
F9O C6  H5  SING N N 28 
F9O C3  H6  SING N N 29 
F9O C3  H7  SING N N 30 
F9O C2  H8  SING N N 31 
F9O C2  H9  SING N N 32 
F9O C1  H10 SING N N 33 
F9O C1  H11 SING N N 34 
F9O N   H12 SING N N 35 
F9O C   H14 SING N N 36 
F9O O   H15 SING N N 37 
F9O C11 H16 SING N N 38 
F9O C12 H17 SING N N 39 
F9O C7  H18 SING N N 40 
F9O C7  H19 SING N N 41 
F9O C8  H20 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F9O InChI            InChI                1.03  "InChI=1S/C15H19Cl2N3O/c16-10-5-6-12-15(14(10)17)19-9-20(12)8-2-3-11-13(21)4-1-7-18-11/h5-6,9,11,13,18,21H,1-4,7-8H2/t11-,13+/m1/s1" 
F9O InChIKey         InChI                1.03  VXCNMWNXDDMFSX-YPMHNXCESA-N                                                                                                          
F9O SMILES_CANONICAL CACTVS               3.385 "O[C@H]1CCCN[C@@H]1CCCn2cnc3c(Cl)c(Cl)ccc23"                                                                                         
F9O SMILES           CACTVS               3.385 "O[CH]1CCCN[CH]1CCCn2cnc3c(Cl)c(Cl)ccc23"                                                                                            
F9O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c2c1n(cn2)CCC[C@@H]3[C@H](CCCN3)O)Cl)Cl"                                                                                     
F9O SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(c2c1n(cn2)CCCC3C(CCCN3)O)Cl)Cl"                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           F9O 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S})-2-[3-[4,5-bis(chloranyl)benzimidazol-1-yl]propyl]piperidin-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F9O "Create component" 2020-04-20 PDBJ 
F9O "Initial release"  2023-07-05 RCSB 
# 
