data_DYO
# 
_chem_comp.id                                    DYO 
_chem_comp.name                                  "3-[4-(aminomethyl)phenyl]-6-[[1-[[2-chloranyl-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]-4-oxidanyl-piperidin-4-yl]methyl]-2-methyl-pyrazolo[4,3-d]pyrimidin-7-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H29 Cl N8 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-16 
_chem_comp.pdbx_modified_date                    2023-04-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        561.035 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DYO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7XHH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DYO C13 C1  C  0 1 Y N N 28.925 -0.896 -13.184 4.597   -1.073 -0.563 C13 DYO 1  
DYO C15 C2  C  0 1 Y N N 30.585 -1.342 -15.212 6.667   -1.260 0.630  C15 DYO 2  
DYO C17 C3  C  0 1 Y N N 28.829 0.652  -15.317 6.609   -0.222 -1.544 C17 DYO 3  
DYO C22 C4  C  0 1 Y N N 36.394 1.257  -7.922  -5.681  0.809  -0.023 C22 DYO 4  
DYO C24 C5  C  0 1 Y N N 37.173 2.279  -7.035  -6.560  -0.378 -0.039 C24 DYO 5  
DYO C26 C6  C  0 1 Y N N 37.252 4.716  -5.988  -8.341  -1.662 0.935  C26 DYO 6  
DYO C28 C7  C  0 1 Y N N 39.202 2.950  -5.515  -7.258  -2.437 -1.062 C28 DYO 7  
DYO C01 C8  C  0 1 Y N N 35.032 1.041  -7.746  -4.311  0.829  -0.229 C01 DYO 8  
DYO C02 C9  C  0 1 Y N N 34.643 0.098  -8.649  -3.944  2.248  -0.105 C02 DYO 9  
DYO C03 C10 C  0 1 N N N 33.176 -0.350 -8.698  -2.524  2.590  -0.278 C03 DYO 10 
DYO C07 C11 C  0 1 N N N 32.651 1.223  -6.850  -2.099  0.287  -0.633 C07 DYO 11 
DYO C08 C12 C  0 1 N N N 30.758 -0.157 -7.923  -0.243  1.868  -0.716 C08 DYO 12 
DYO C09 C13 C  0 1 N N N 29.940 0.950  -8.802  0.468   1.791  0.636  C09 DYO 13 
DYO C12 C14 C  0 1 N N N 28.391 -1.232 -11.769 3.112   -1.317 -0.641 C12 DYO 14 
DYO C14 C15 C  0 1 Y N N 30.050 -1.701 -13.820 5.306   -1.482 0.554  C14 DYO 15 
DYO C16 C16 C  0 1 Y N N 29.960 -0.153 -15.948 7.326   -0.625 -0.420 C16 DYO 16 
DYO C18 C17 C  0 1 Y N N 28.311 0.286  -13.931 5.249   -0.447 -1.610 C18 DYO 17 
DYO C23 C18 C  0 1 N N N 38.188 0.335  -9.453  -7.437  2.525  0.453  C23 DYO 18 
DYO C25 C19 C  0 1 Y N N 36.555 3.661  -6.859  -7.524  -0.551 0.956  C25 DYO 19 
DYO C27 C20 C  0 1 Y N N 38.586 4.339  -5.336  -8.207  -2.604 -0.069 C27 DYO 20 
DYO C29 C21 C  0 1 Y N N 38.498 1.896  -6.373  -6.434  -1.330 -1.053 C29 DYO 21 
DYO C30 C22 C  0 1 N N N 39.313 5.347  -4.437  -9.100  -3.818 -0.082 C30 DYO 22 
DYO C32 C23 C  0 1 N N N 30.688 0.812  -10.055 0.313   0.383  1.218  C32 DYO 23 
DYO C33 C24 C  0 1 N N N 30.183 -0.342 -10.914 0.984   -0.626 0.283  C33 DYO 24 
DYO C34 C25 C  0 1 N N N 28.715 0.260  -8.532  1.957   2.097  0.449  C34 DYO 25 
DYO C35 C26 C  0 1 N N N 28.134 -0.559 -9.706  2.580   1.038  -0.463 C35 DYO 26 
DYO C36 C27 C  0 1 Y N N 30.437 0.264  -17.347 8.789   -0.385 -0.345 C36 DYO 27 
DYO C38 C28 C  0 1 Y N N 31.581 0.455  -19.167 10.801  -0.324 0.321  C38 DYO 28 
DYO N04 N1  N  0 1 N N N 34.044 1.646  -6.795  -3.337  -0.075 -0.491 N04 DYO 29 
DYO N05 N2  N  0 1 N N N 32.206 0.222  -7.823  -1.668  1.575  -0.536 N05 DYO 30 
DYO N10 N3  N  0 1 N N N 28.745 -0.335 -11.019 2.406   -0.291 0.138  N10 DYO 31 
DYO N20 N4  N  0 1 Y N N 35.723 -0.282 -9.370  -5.053  2.900  0.146  N20 DYO 32 
DYO N21 N5  N  0 1 Y N N 36.832 0.443  -8.912  -6.059  2.101  0.192  N21 DYO 33 
DYO N31 N6  N  0 1 N N N 38.832 5.060  -3.085  -10.314 -3.525 -0.855 N31 DYO 34 
DYO N37 N7  N  0 1 Y N N 31.549 -0.156 -17.978 9.606   -0.721 0.679  N37 DYO 35 
DYO N40 N8  N  0 1 Y N N 29.801 1.125  -18.124 9.530   0.186  -1.258 N40 DYO 36 
DYO O06 O1  O  0 1 N N N 32.876 -1.158 -9.494  -2.135  3.740  -0.192 O06 DYO 37 
DYO O11 O2  O  0 1 N N N 30.348 2.056  -7.927  -0.107  2.744  1.533  O11 DYO 38 
DYO O39 O3  O  0 1 Y N N 30.510 1.244  -19.266 10.685  0.230  -0.890 O39 DYO 39 
DYO CL1 CL1 CL 0 0 N N N 30.746 -3.069 -12.935 4.482   -2.273 1.862  CL1 DYO 40 
DYO H1  H1  H  0 1 N N N 31.383 -1.914 -15.662 7.219   -1.578 1.502  H1  DYO 41 
DYO H2  H2  H  0 1 N N N 28.394 1.483  -15.853 7.116   0.267  -2.363 H2  DYO 42 
DYO H3  H3  H  0 1 N N N 36.816 5.693  -5.840  -9.084  -1.799 1.707  H3  DYO 43 
DYO H4  H4  H  0 1 N N N 40.139 2.712  -5.033  -7.159  -3.176 -1.843 H4  DYO 44 
DYO H5  H5  H  0 1 N N N 31.936 1.653  -6.164  -1.367  -0.479 -0.841 H5  DYO 45 
DYO H6  H6  H  0 1 N N N 30.326 -0.209 -6.913  -0.128  2.869  -1.131 H6  DYO 46 
DYO H7  H7  H  0 1 N N N 30.673 -1.140 -8.409  0.194   1.139  -1.399 H7  DYO 47 
DYO H8  H8  H  0 1 N N N 27.293 -1.294 -11.787 2.790   -1.269 -1.681 H8  DYO 48 
DYO H9  H9  H  0 1 N N N 28.807 -2.192 -11.429 2.884   -2.302 -0.235 H9  DYO 49 
DYO H10 H10 H  0 1 N N N 27.515 0.859  -13.480 4.692   -0.135 -2.481 H10 DYO 50 
DYO H11 H11 H  0 1 N N N 38.200 -0.400 -10.271 -7.930  2.761  -0.490 H11 DYO 51 
DYO H12 H12 H  0 1 N N N 38.509 1.315  -9.837  -7.976  1.720  0.953  H12 DYO 52 
DYO H13 H13 H  0 1 N N N 38.875 0.010  -8.658  -7.431  3.408  1.091  H13 DYO 53 
DYO H14 H14 H  0 1 N N N 35.623 3.899  -7.349  -7.629  0.184  1.741  H14 DYO 54 
DYO H15 H15 H  0 1 N N N 38.923 0.912  -6.507  -5.694  -1.201 -1.828 H15 DYO 55 
DYO H16 H16 H  0 1 N N N 40.402 5.206  -4.499  -8.570  -4.654 -0.540 H16 DYO 56 
DYO H17 H17 H  0 1 N N N 39.060 6.377  -4.727  -9.373  -4.079 0.940  H17 DYO 57 
DYO H18 H18 H  0 1 N N N 31.747 0.636  -9.816  0.786   0.341  2.199  H18 DYO 58 
DYO H19 H19 H  0 1 N N N 30.592 1.746  -10.628 -0.746  0.143  1.314  H19 DYO 59 
DYO H20 H20 H  0 1 N N N 30.503 -1.292 -10.460 0.888   -1.628 0.702  H20 DYO 60 
DYO H21 H21 H  0 1 N N N 30.615 -0.253 -11.922 0.502   -0.593 -0.694 H21 DYO 61 
DYO H22 H22 H  0 1 N N N 27.964 1.008  -8.237  2.072   3.081  -0.004 H22 DYO 62 
DYO H23 H23 H  0 1 N N N 27.065 -0.315 -9.788  2.089   1.063  -1.436 H23 DYO 63 
DYO H24 H24 H  0 1 N N N 32.345 0.331  -19.920 11.710  -0.426 0.895  H24 DYO 64 
DYO H25 H25 H  0 1 N N N 39.267 5.685  -2.436  -10.084 -3.219 -1.788 H25 DYO 65 
DYO H26 H26 H  0 1 N N N 37.840 5.182  -3.051  -10.929 -4.325 -0.878 H26 DYO 66 
DYO H28 H28 H  0 1 N N N 29.806 2.059  -7.147  -1.050  2.610  1.697  H28 DYO 67 
DYO H29 H29 H  0 1 N N N 28.894 -0.430 -7.694  2.455   2.082  1.418  H29 DYO 68 
DYO H30 H30 H  0 1 N N N 28.249 -1.625 -9.460  3.643   1.245  -0.586 H30 DYO 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DYO O39 C38 SING Y N 1  
DYO O39 N40 SING Y N 2  
DYO C38 N37 DOUB Y N 3  
DYO N40 C36 DOUB Y N 4  
DYO N37 C36 SING Y N 5  
DYO C36 C16 SING N N 6  
DYO C16 C17 DOUB Y N 7  
DYO C16 C15 SING Y N 8  
DYO C17 C18 SING Y N 9  
DYO C15 C14 DOUB Y N 10 
DYO C18 C13 DOUB Y N 11 
DYO C14 C13 SING Y N 12 
DYO C14 CL1 SING N N 13 
DYO C13 C12 SING N N 14 
DYO C12 N10 SING N N 15 
DYO N10 C33 SING N N 16 
DYO N10 C35 SING N N 17 
DYO C33 C32 SING N N 18 
DYO C32 C09 SING N N 19 
DYO C35 C34 SING N N 20 
DYO O06 C03 DOUB N N 21 
DYO C23 N21 SING N N 22 
DYO N20 N21 SING Y N 23 
DYO N20 C02 DOUB Y N 24 
DYO N21 C22 SING Y N 25 
DYO C09 C34 SING N N 26 
DYO C09 O11 SING N N 27 
DYO C09 C08 SING N N 28 
DYO C03 C02 SING N N 29 
DYO C03 N05 SING N N 30 
DYO C02 C01 SING Y N 31 
DYO C08 N05 SING N N 32 
DYO C22 C01 DOUB Y N 33 
DYO C22 C24 SING N N 34 
DYO N05 C07 SING N N 35 
DYO C01 N04 SING N N 36 
DYO C24 C25 DOUB Y N 37 
DYO C24 C29 SING Y N 38 
DYO C25 C26 SING Y N 39 
DYO C07 N04 DOUB N N 40 
DYO C29 C28 DOUB Y N 41 
DYO C26 C27 DOUB Y N 42 
DYO C28 C27 SING Y N 43 
DYO C27 C30 SING N N 44 
DYO C30 N31 SING N N 45 
DYO C15 H1  SING N N 46 
DYO C17 H2  SING N N 47 
DYO C26 H3  SING N N 48 
DYO C28 H4  SING N N 49 
DYO C07 H5  SING N N 50 
DYO C08 H6  SING N N 51 
DYO C08 H7  SING N N 52 
DYO C12 H8  SING N N 53 
DYO C12 H9  SING N N 54 
DYO C18 H10 SING N N 55 
DYO C23 H11 SING N N 56 
DYO C23 H12 SING N N 57 
DYO C23 H13 SING N N 58 
DYO C25 H14 SING N N 59 
DYO C29 H15 SING N N 60 
DYO C30 H16 SING N N 61 
DYO C30 H17 SING N N 62 
DYO C32 H18 SING N N 63 
DYO C32 H19 SING N N 64 
DYO C33 H20 SING N N 65 
DYO C33 H21 SING N N 66 
DYO C34 H22 SING N N 67 
DYO C35 H23 SING N N 68 
DYO C38 H24 SING N N 69 
DYO N31 H25 SING N N 70 
DYO N31 H26 SING N N 71 
DYO O11 H28 SING N N 72 
DYO C34 H29 SING N N 73 
DYO C35 H30 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DYO InChI            InChI                1.03  "InChI=1S/C28H29ClN8O3/c1-35-25(19-4-2-18(13-30)3-5-19)23-24(33-35)27(38)37(16-31-23)15-28(39)8-10-36(11-9-28)14-21-7-6-20(12-22(21)29)26-32-17-40-34-26/h2-7,12,16-17,39H,8-11,13-15,30H2,1H3" 
DYO InChIKey         InChI                1.03  SUBLUDSEMODLLX-UHFFFAOYSA-N                                                                                                                                                                     
DYO SMILES_CANONICAL CACTVS               3.385 "Cn1nc2C(=O)N(CC3(O)CCN(CC3)Cc4ccc(cc4Cl)c5nocn5)C=Nc2c1c6ccc(CN)cc6"                                                                                                                           
DYO SMILES           CACTVS               3.385 "Cn1nc2C(=O)N(CC3(O)CCN(CC3)Cc4ccc(cc4Cl)c5nocn5)C=Nc2c1c6ccc(CN)cc6"                                                                                                                           
DYO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c(c2c(n1)C(=O)N(C=N2)CC3(CCN(CC3)Cc4ccc(cc4Cl)c5ncon5)O)c6ccc(cc6)CN"                                                                                                                       
DYO SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1c(c2c(n1)C(=O)N(C=N2)CC3(CCN(CC3)Cc4ccc(cc4Cl)c5ncon5)O)c6ccc(cc6)CN"                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           DYO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[4-(aminomethyl)phenyl]-6-[[1-[[2-chloranyl-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]-4-oxidanyl-piperidin-4-yl]methyl]-2-methyl-pyrazolo[4,3-d]pyrimidin-7-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DYO "Create component" 2022-04-16 PDBJ 
DYO "Initial release"  2023-04-19 RCSB 
# 
