data_BLO
#

_chem_comp.id                                   BLO
_chem_comp.name                                 "1-(4-{[(3R)-3-AMINO-5-{[(Z)-AMINO(IMINO)METHYL](METHYL)AMINO}PENTANOYL]AMINO}-2,3,4-TRIDEOXY-D-ERYTHRO-HEX-2-ENOPYRANURONOSYL)-4-HYDROXYPYRIMIDIN-2(1H)-ONE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H25 N7 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "DEAMINOHYDROXY BLASTICIDIN-S"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-05-10
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       423.424
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BLO
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BLO  O7      O7      O  0  1  N  N  N  22.343  32.462  106.153   -1.314   0.545  -1.057  O7      BLO   1  
BLO  C7      C7      C  0  1  N  N  N  22.135  33.663  106.043   -1.439   0.019   0.028  C7      BLO   2  
BLO  C8      C8      C  0  1  N  N  N  20.811  34.320  106.388   -2.807  -0.121   0.644  C8      BLO   3  
BLO  C9      C9      C  0  1  N  N  S  19.600  33.511  105.965   -3.854   0.478  -0.297  C9      BLO   4  
BLO  C10     C10     C  0  1  N  N  N  18.365  34.380  106.179   -5.225   0.449   0.381  C10     BLO   5  
BLO  C11     C11     C  0  1  N  N  N  17.689  34.741  104.859   -6.248   1.160  -0.508  C11     BLO   6  
BLO  N12     N12     N  0  1  N  N  N  16.779  35.884  105.045   -7.561   1.132   0.142  N12     BLO   7  
BLO  C14     C14     C  0  1  N  N  N  15.502  35.736  105.658   -8.424   0.088  -0.095  C14     BLO   8  
BLO  N15     N15     N  0  1  N  N  N  15.038  34.538  106.018   -9.592   0.064   0.483  N15     BLO   9  
BLO  N14     N14     N  0  1  N  N  N  14.745  36.813  105.893   -8.054  -0.931  -0.941  N14     BLO  10  
BLO  C13     C13     C  0  1  N  N  N  17.237  37.218  104.630   -7.956   2.218   1.043  C13     BLO  11  
BLO  N9      N9      N  0  1  N  N  N  19.521  32.347  106.822   -3.904  -0.308  -1.537  N9      BLO  12  
BLO  N6      N6      N  0  1  N  N  N  23.050  34.518  105.615   -0.355  -0.442   0.683  N6      BLO  13  
BLO  "C4'"   "C4'"   C  0  1  N  N  S  24.414  34.144  105.241    0.975  -0.306   0.084  "C4'"   BLO  14  
BLO  "C3'"   "C3'"   C  0  1  N  N  N  24.799  34.558  103.820    1.540   1.052   0.411  "C3'"   BLO  15  
BLO  "C2'"   "C2'"   C  0  1  N  N  N  25.849  35.252  103.575    2.769   1.188   0.822  "C2'"   BLO  16  
BLO  "C5'"   "C5'"   C  0  1  N  N  S  25.342  34.944  106.167    1.905  -1.384   0.649  "C5'"   BLO  17  
BLO  "C6'"   "C6'"   C  0  1  N  N  N  25.365  34.453  107.586    1.491  -2.738   0.134  "C6'"   BLO  18  
BLO  O3      O3      O  0  1  N  N  N  24.682  35.088  108.412    0.306  -3.258   0.490  O3      BLO  19  
BLO  O4      O4      O  0  1  N  N  N  26.070  33.472  107.892    2.227  -3.357  -0.598  O4      BLO  20  
BLO  "O5'"   "O5'"   O  0  1  N  N  N  26.692  34.828  105.719    3.243  -1.100   0.232  "O5'"   BLO  21  
BLO  "C1'"   "C1'"   C  0  1  N  N  R  26.871  35.150  104.358    3.692   0.017   0.996  "C1'"   BLO  22  
BLO  N1      N1      N  0  1  Y  N  N  28.129  34.971  103.895    5.037   0.392   0.554  N1      BLO  23  
BLO  C6      C6      C  0  1  Y  N  N  28.276  33.658  103.648    6.058   0.440   1.454  C6      BLO  24  
BLO  C5      C5      C  0  1  Y  N  N  29.459  33.167  103.140    7.298   0.789   1.032  C5      BLO  25  
BLO  C4      C4      C  0  1  Y  N  N  30.447  34.099  102.888    7.495   1.093  -0.328  C4      BLO  26  
BLO  O1      O1      O  0  1  N  N  N  31.577  33.691  102.320    8.722   1.444  -0.774  O1      BLO  27  
BLO  N3      N3      N  0  1  Y  N  N  30.304  35.409  103.195    6.473   1.033  -1.168  N3      BLO  28  
BLO  C2      C2      C  0  1  Y  N  N  29.121  35.868  103.678    5.260   0.684  -0.741  C2      BLO  29  
BLO  O2      O2      O  0  1  N  N  N  29.019  37.101  103.885    4.335   0.636  -1.534  O2      BLO  30  
BLO  H81     1H8     H  0  1  N  N  N  20.771  35.273  105.841   -2.832   0.407   1.598  H81     BLO  31  
BLO  H82     2H8     H  0  1  N  N  N  20.769  34.452  107.479   -3.026  -1.176   0.807  H82     BLO  32  
BLO  H9      H9      H  0  1  N  N  N  19.668  33.200  104.912   -3.586   1.508  -0.531  H9      BLO  33  
BLO  H101    1H10    H  0  0  N  N  N  18.683  35.313  106.668   -5.165   0.957   1.344  H101    BLO  34  
BLO  H102    2H10    H  0  0  N  N  N  17.648  33.826  106.802   -5.533  -0.585   0.534  H102    BLO  35  
BLO  H111    1H11    H  0  0  N  N  N  17.109  33.876  104.506   -6.308   0.652  -1.470  H111    BLO  36  
BLO  H112    2H11    H  0  0  N  N  N  18.459  35.009  104.120   -5.940   2.194  -0.661  H112    BLO  37  
BLO  H15     H15     H  0  1  N  N  N  14.132  34.639  106.428  -10.200  -0.673   0.315  H15     BLO  38  
BLO  H141    1H14    H  0  0  N  N  N  13.841  36.800  106.321   -8.662  -1.667  -1.108  H141    BLO  39  
BLO  H142    2H14    H  0  0  N  N  N  15.221  37.633  105.576   -7.184  -0.913  -1.371  H142    BLO  40  
BLO  H131    1H13    H  0  0  N  N  N  16.497  37.664  103.948   -7.150   2.949   1.106  H131    BLO  41  
BLO  H132    2H13    H  0  0  N  N  N  18.205  37.129  104.114   -8.855   2.700   0.660  H132    BLO  42  
BLO  H133    3H13    H  0  0  N  N  N  17.351  37.859  105.516   -8.156   1.812   2.035  H133    BLO  43  
BLO  HN91    1HN9    H  0  0  N  N  N  20.318  32.323  107.425   -4.155  -1.250  -1.274  HN91    BLO  44  
BLO  HN92    2HN9    H  0  0  N  N  N  19.503  31.520  106.261   -4.673   0.055  -2.080  HN92    BLO  45  
BLO  HN6     HN6     H  0  1  N  N  N  22.793  35.482  105.543   -0.455  -0.863   1.551  HN6     BLO  46  
BLO  "H4'"   "H4'"   H  0  1  N  N  N  24.494  33.049  105.315    0.901  -0.419  -0.998  "H4'"   BLO  47  
BLO  "H3'"   "H3'"   H  0  1  N  N  N  24.167  34.257  102.998    0.916   1.927   0.303  "H3'"   BLO  48  
BLO  "H2'"   "H2'"   H  0  1  N  N  N  25.878  35.915  102.723    3.137   2.179   1.044  "H2'"   BLO  49  
BLO  "H5'"   "H5'"   H  0  1  N  N  N  24.948  35.970  106.136    1.852  -1.375   1.738  "H5'"   BLO  50  
BLO  HO3     HO3     H  0  1  N  N  N  24.792  34.706  109.275    0.041  -4.128   0.159  HO3     BLO  51  
BLO  "H1'"   "H1'"   H  0  1  N  N  N  26.825  36.247  104.293    3.725  -0.260   2.050  "H1'"   BLO  52  
BLO  H6      H6      H  0  1  N  N  N  27.459  32.981  103.850    5.881   0.203   2.493  H6      BLO  53  
BLO  H5      H5      H  0  1  N  N  N  29.605  32.114  102.950    8.122   0.834   1.729  H5      BLO  54  
BLO  HO1     HO1     H  0  1  N  N  N  31.444  33.594  101.384    8.637   1.607  -1.724  HO1     BLO  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BLO  O7     C7      DOUB  N  N   1  
BLO  C7     C8      SING  N  N   2  
BLO  C7     N6      SING  N  N   3  
BLO  C8     C9      SING  N  N   4  
BLO  C8     H81     SING  N  N   5  
BLO  C8     H82     SING  N  N   6  
BLO  C9     C10     SING  N  N   7  
BLO  C9     N9      SING  N  N   8  
BLO  C9     H9      SING  N  N   9  
BLO  C10    C11     SING  N  N  10  
BLO  C10    H101    SING  N  N  11  
BLO  C10    H102    SING  N  N  12  
BLO  C11    N12     SING  N  N  13  
BLO  C11    H111    SING  N  N  14  
BLO  C11    H112    SING  N  N  15  
BLO  N12    C14     SING  N  N  16  
BLO  N12    C13     SING  N  N  17  
BLO  C14    N15     DOUB  N  E  18  
BLO  C14    N14     SING  N  N  19  
BLO  N15    H15     SING  N  N  20  
BLO  N14    H141    SING  N  N  21  
BLO  N14    H142    SING  N  N  22  
BLO  C13    H131    SING  N  N  23  
BLO  C13    H132    SING  N  N  24  
BLO  C13    H133    SING  N  N  25  
BLO  N9     HN91    SING  N  N  26  
BLO  N9     HN92    SING  N  N  27  
BLO  N6     "C4'"   SING  N  N  28  
BLO  N6     HN6     SING  N  N  29  
BLO  "C4'"  "C3'"   SING  N  N  30  
BLO  "C4'"  "C5'"   SING  N  N  31  
BLO  "C4'"  "H4'"   SING  N  N  32  
BLO  "C3'"  "C2'"   DOUB  N  N  33  
BLO  "C3'"  "H3'"   SING  N  N  34  
BLO  "C2'"  "C1'"   SING  N  N  35  
BLO  "C2'"  "H2'"   SING  N  N  36  
BLO  "C5'"  "C6'"   SING  N  N  37  
BLO  "C5'"  "O5'"   SING  N  N  38  
BLO  "C5'"  "H5'"   SING  N  N  39  
BLO  "C6'"  O3      SING  N  N  40  
BLO  "C6'"  O4      DOUB  N  N  41  
BLO  O3     HO3     SING  N  N  42  
BLO  "O5'"  "C1'"   SING  N  N  43  
BLO  "C1'"  N1      SING  N  N  44  
BLO  "C1'"  "H1'"   SING  N  N  45  
BLO  N1     C6      SING  Y  N  46  
BLO  N1     C2      SING  Y  N  47  
BLO  C6     C5      DOUB  Y  N  48  
BLO  C6     H6      SING  N  N  49  
BLO  C5     C4      SING  Y  N  50  
BLO  C5     H5      SING  N  N  51  
BLO  C4     O1      SING  N  N  52  
BLO  C4     N3      DOUB  Y  N  53  
BLO  O1     HO1     SING  N  N  54  
BLO  N3     C2      SING  Y  N  55  
BLO  C2     O2      DOUB  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BLO  SMILES            ACDLabs               10.04  "O=C1N=C(O)C=CN1C2OC(C(=O)O)C(C=C2)NC(=O)CC(N)CCN(C(=[N@H])N)C"  
BLO  SMILES_CANONICAL  CACTVS                3.341  "CN(CC[C@H](N)CC(=O)N[C@H]1C=C[C@@H](O[C@@H]1C(O)=O)N2C=CC(=NC2=O)O)C(N)=N"  
BLO  SMILES            CACTVS                3.341  "CN(CC[CH](N)CC(=O)N[CH]1C=C[CH](O[CH]1C(O)=O)N2C=CC(=NC2=O)O)C(N)=N"  
BLO  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "[H]/N=C(\N)/N(C)CC[C@@H](CC(=O)N[C@H]1C=C[C@@H](O[C@@H]1C(=O)O)N2C=CC(=NC2=O)O)N"  
BLO  SMILES            "OpenEye OEToolkits"  1.5.0  "[H]N=C(N)N(C)CCC(CC(=O)NC1C=CC(OC1C(=O)O)N2C=CC(=NC2=O)O)N"  
BLO  InChI             InChI                 1.03   "InChI=1S/C17H25N7O6/c1-23(16(19)20)6-4-9(18)8-12(26)21-10-2-3-13(30-14(10)15(27)28)24-7-5-11(25)22-17(24)29/h2-3,5,7,9-10,13-14H,4,6,8,18H2,1H3,(H3,19,20)(H,21,26)(H,27,28)(H,22,25,29)/t9-,10-,13+,14-/m0/s1"  
BLO  InChIKey          InChI                 1.03   REIIQZAQCCFGIJ-ZNIXKSQXSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BLO  "SYSTEMATIC NAME"  ACDLabs               10.04  "1-[4-({(3S)-3-amino-5-[carbamimidoyl(methyl)amino]pentanoyl}amino)-2,3,4-trideoxy-beta-D-erythro-hex-2-enopyranuronosyl]-4-hydroxypyrimidin-2(1H)-one"  
BLO  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3S,6R)-3-[[(3S)-3-amino-5-(carbamimidoyl-methyl-amino)pentanoyl]amino]-6-(4-hydroxy-2-oxo-pyrimidin-1-yl)-3,6-dihydro-2H-pyran-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BLO  "Create component"   2006-05-10  RCSB  
BLO  "Modify descriptor"  2011-06-04  RCSB  
BLO  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     BLO
_pdbx_chem_comp_synonyms.name        "DEAMINOHYDROXY BLASTICIDIN-S"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
