data_B8O
#

_chem_comp.id                                   B8O
_chem_comp.name                                 "2-{[(3R,5R)-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methylpiperidin-3-yl]amino}-3-methyl-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H25 N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-01-22
_chem_comp.pdbx_modified_date                   2019-04-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       395.455
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B8O
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6J3P
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B8O  C7   C1   C  0  1  N  N  R  -14.834   -6.194  15.003  -1.617  -0.879  -0.018  C7   B8O   1  
B8O  C8   C2   C  0  1  N  N  N  -14.828   -7.667  15.338  -1.447  -2.075   0.921  C8   B8O   2  
B8O  C6   C3   C  0  1  Y  N  N  -11.066   -5.650  14.289  -5.136   0.196  -0.885  C6   B8O   3  
B8O  C10  C4   C  0  1  N  N  N  -16.679   -8.098  14.232   0.906  -1.580   1.219  C10  B8O   4  
B8O  N9   N1   N  0  1  N  N  N  -16.041   -8.224  15.390  -0.077  -2.593   0.813  N9   B8O   5  
B8O  C5   C5   C  0  1  Y  N  N  -12.513   -6.197  14.385  -3.847  -0.303  -0.997  C5   B8O   6  
B8O  C4   C6   C  0  1  Y  N  N  -13.459   -5.565  14.944  -3.017  -0.335   0.108  C4   B8O   7  
B8O  C1   C7   C  0  1  Y  N  N  -10.914   -4.354  14.889  -5.592   0.661   0.343  C1   B8O   8  
B8O  C3   C8   C  0  1  Y  N  N  -13.345   -4.482  15.468  -3.470   0.130   1.328  C3   B8O   9  
B8O  C2   C9   C  0  1  Y  N  N  -12.234   -3.831  15.522  -4.754   0.628   1.448  C2   B8O  10  
B8O  C11  C10  C  0  1  N  N  R  -16.882   -6.628  13.842   0.806  -0.369   0.290  C11  B8O  11  
B8O  C12  C11  C  0  1  N  N  N  -15.537   -6.022  13.675  -0.610   0.210   0.363  C12  B8O  12  
B8O  C14  C12  C  0  1  N  N  N  -16.044   -9.468  15.716   0.083  -3.826   1.596  C14  B8O  13  
B8O  C15  C13  C  0  1  N  N  N  -18.605   -5.620  12.504   3.073   0.584   0.266  C15  B8O  14  
B8O  C17  C14  C  0  1  N  N  N  -20.370   -4.607  10.955   5.243   1.502   0.255  C17  B8O  15  
B8O  C18  C15  C  0  1  Y  N  N  -20.648   -3.733  11.992   5.641   0.459  -0.603  C18  B8O  16  
B8O  C19  C16  C  0  1  Y  N  N  -19.885   -3.850  13.251   4.693  -0.498  -0.983  C19  B8O  17  
B8O  C22  C17  C  0  1  Y  N  N  -21.357   -2.175  13.379   6.640  -1.010  -1.947  C22  B8O  18  
B8O  C23  C18  C  0  1  Y  N  N  -20.500   -2.738  14.028   5.357  -1.410  -1.832  C23  B8O  19  
B8O  C26  C19  C  0  1  N  N  N   -8.845   -5.507  13.410  -7.342   0.386  -1.750  C26  B8O  20  
B8O  C27  C20  C  0  1  N  N  N   -8.742   -4.405  14.366  -7.536   1.514  -0.728  C27  B8O  21  
B8O  C29  C21  C  0  1  N  N  N  -19.008   -6.516  10.203   3.515   2.612   1.565  C29  B8O  22  
B8O  N13  N2   N  0  1  N  N  N  -17.638   -6.577  12.634   1.773   0.649   0.707  N13  B8O  23  
B8O  N16  N3   N  0  1  N  N  N  -19.382   -5.535  11.211   3.959   1.539   0.672  N16  B8O  24  
B8O  N20  N4   N  0  1  N  N  N  -18.970   -4.718  13.484   3.428  -0.397  -0.528  N20  B8O  25  
B8O  N21  N5   N  0  1  Y  N  N  -21.508   -2.638  12.258   6.832   0.117  -1.207  N21  B8O  26  
B8O  O24  O1   O  0  1  N  N  N  -21.002   -4.644   9.824   6.041   2.352   0.613  O24  B8O  27  
B8O  O25  O2   O  0  1  N  N  N  -10.014   -6.298  13.599  -5.938   0.228  -1.983  O25  B8O  28  
B8O  O28  O3   O  0  1  N  N  N   -9.727   -3.769  14.880  -6.855   1.148   0.478  O28  B8O  29  
B8O  H1   H1   H  0  1  N  N  N  -15.419   -5.669  15.772  -1.441  -1.195  -1.046  H1   B8O  30  
B8O  H2   H2   H  0  1  N  N  N  -14.240   -8.192  14.571  -1.638  -1.762   1.947  H2   B8O  31  
B8O  H3   H3   H  0  1  N  N  N  -14.348   -7.795  16.319  -2.154  -2.858   0.643  H3   B8O  32  
B8O  H4   H4   H  0  1  N  N  N  -17.663   -8.582  14.315   0.704  -1.269   2.244  H4   B8O  33  
B8O  H5   H5   H  0  1  N  N  N  -16.091   -8.595  13.447   1.909  -2.003   1.158  H5   B8O  34  
B8O  H7   H7   H  0  1  N  N  N  -12.726   -7.164  13.954  -3.491  -0.668  -1.950  H7   B8O  35  
B8O  H8   H8   H  0  1  N  N  N  -14.221   -4.036  15.915  -2.819   0.104   2.190  H8   B8O  36  
B8O  H9   H9   H  0  1  N  N  N  -12.219   -2.878  16.030  -5.105   0.990   2.403  H9   B8O  37  
B8O  H10  H10  H  0  1  N  N  N  -17.419   -6.115  14.653   1.021  -0.677  -0.734  H10  B8O  38  
B8O  H11  H11  H  0  1  N  N  N  -14.981   -6.539  12.879  -0.698   1.046  -0.330  H11  B8O  39  
B8O  H12  H12  H  0  1  N  N  N  -15.627   -4.954  13.426  -0.811   0.553   1.378  H12  B8O  40  
B8O  H13  H13  H  0  1  N  N  N  -15.520   -9.598  16.674  -0.607  -4.583   1.225  H13  B8O  41  
B8O  H14  H14  H  0  1  N  N  N  -17.082   -9.818  15.816   1.107  -4.187   1.499  H14  B8O  42  
B8O  H15  H15  H  0  1  N  N  N  -15.533  -10.052  14.937  -0.132  -3.621   2.645  H15  B8O  43  
B8O  H16  H16  H  0  1  N  N  N  -21.932   -1.343  13.757   7.398  -1.508  -2.533  H16  B8O  44  
B8O  H17  H17  H  0  1  N  N  N  -20.220   -2.468  15.036   4.917  -2.275  -2.304  H17  B8O  45  
B8O  H18  H18  H  0  1  N  N  N   -7.962   -6.153  13.523  -7.756  -0.542  -1.356  H18  B8O  46  
B8O  H19  H19  H  0  1  N  N  N   -8.865   -5.088  12.393  -7.843   0.646  -2.683  H19  B8O  47  
B8O  H20  H20  H  0  1  N  N  N   -8.183   -4.814  15.221  -7.116   2.441  -1.118  H20  B8O  48  
B8O  H21  H21  H  0  1  N  N  N   -8.134   -3.640  13.862  -8.599   1.647  -0.525  H21  B8O  49  
B8O  H22  H22  H  0  1  N  N  N  -18.208   -7.161  10.597   4.352   3.276   1.779  H22  B8O  50  
B8O  H23  H23  H  0  1  N  N  N  -19.883   -7.132   9.948   2.716   3.177   1.084  H23  B8O  51  
B8O  H24  H24  H  0  1  N  N  N  -18.650   -5.997   9.302   3.145   2.181   2.495  H24  B8O  52  
B8O  H25  H25  H  0  1  N  N  N  -17.464   -7.229  11.896   1.496   1.369   1.295  H25  B8O  53  
B8O  H26  H26  H  0  1  N  N  N  -22.169   -2.282  11.598   7.669   0.600  -1.121  H26  B8O  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B8O  O24  C17  DOUB  N  N   1  
B8O  C29  N16  SING  N  N   2  
B8O  C17  N16  SING  N  N   3  
B8O  C17  C18  SING  N  N   4  
B8O  N16  C15  SING  N  N   5  
B8O  C18  N21  SING  Y  N   6  
B8O  C18  C19  DOUB  Y  N   7  
B8O  N21  C22  SING  Y  N   8  
B8O  C15  N13  SING  N  N   9  
B8O  C15  N20  DOUB  N  N  10  
B8O  N13  C11  SING  N  N  11  
B8O  C19  N20  SING  N  N  12  
B8O  C19  C23  SING  Y  N  13  
B8O  C22  C23  DOUB  Y  N  14  
B8O  C26  O25  SING  N  N  15  
B8O  C26  C27  SING  N  N  16  
B8O  O25  C6   SING  N  N  17  
B8O  C12  C11  SING  N  N  18  
B8O  C12  C7   SING  N  N  19  
B8O  C11  C10  SING  N  N  20  
B8O  C10  N9   SING  N  N  21  
B8O  C6   C5   DOUB  Y  N  22  
B8O  C6   C1   SING  Y  N  23  
B8O  C27  O28  SING  N  N  24  
B8O  C5   C4   SING  Y  N  25  
B8O  O28  C1   SING  N  N  26  
B8O  C1   C2   DOUB  Y  N  27  
B8O  C4   C7   SING  N  N  28  
B8O  C4   C3   DOUB  Y  N  29  
B8O  C7   C8   SING  N  N  30  
B8O  C8   N9   SING  N  N  31  
B8O  N9   C14  SING  N  N  32  
B8O  C3   C2   SING  Y  N  33  
B8O  C7   H1   SING  N  N  34  
B8O  C8   H2   SING  N  N  35  
B8O  C8   H3   SING  N  N  36  
B8O  C10  H4   SING  N  N  37  
B8O  C10  H5   SING  N  N  38  
B8O  C5   H7   SING  N  N  39  
B8O  C3   H8   SING  N  N  40  
B8O  C2   H9   SING  N  N  41  
B8O  C11  H10  SING  N  N  42  
B8O  C12  H11  SING  N  N  43  
B8O  C12  H12  SING  N  N  44  
B8O  C14  H13  SING  N  N  45  
B8O  C14  H14  SING  N  N  46  
B8O  C14  H15  SING  N  N  47  
B8O  C22  H16  SING  N  N  48  
B8O  C23  H17  SING  N  N  49  
B8O  C26  H18  SING  N  N  50  
B8O  C26  H19  SING  N  N  51  
B8O  C27  H20  SING  N  N  52  
B8O  C27  H21  SING  N  N  53  
B8O  C29  H22  SING  N  N  54  
B8O  C29  H23  SING  N  N  55  
B8O  C29  H24  SING  N  N  56  
B8O  N13  H25  SING  N  N  57  
B8O  N21  H26  SING  N  N  58  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B8O  SMILES            ACDLabs               12.01  "C1(CN(CC(C1)NC2=Nc3c(C(N2C)=O)ncc3)C)c4cc5c(cc4)OCCO5"  
B8O  InChI             InChI                 1.03   "InChI=1S/C21H25N5O3/c1-25-11-14(13-3-4-17-18(10-13)29-8-7-28-17)9-15(12-25)23-21-24-16-5-6-22-19(16)20(27)26(21)2/h3-6,10,14-15,22H,7-9,11-12H2,1-2H3,(H,23,24)/t14-,15+/m0/s1"  
B8O  InChIKey          InChI                 1.03   PUFPGLSWMMJNSE-LSDHHAIUSA-N  
B8O  SMILES_CANONICAL  CACTVS                3.385  "CN1C[C@@H](C[C@@H](C1)c2ccc3OCCOc3c2)NC4=Nc5cc[nH]c5C(=O)N4C"  
B8O  SMILES            CACTVS                3.385  "CN1C[CH](C[CH](C1)c2ccc3OCCOc3c2)NC4=Nc5cc[nH]c5C(=O)N4C"  
B8O  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CN1C[C@H](C[C@H](C1)NC2=Nc3cc[nH]c3C(=O)N2C)c4ccc5c(c4)OCCO5"  
B8O  SMILES            "OpenEye OEToolkits"  2.0.6  "CN1CC(CC(C1)NC2=Nc3cc[nH]c3C(=O)N2C)c4ccc5c(c4)OCCO5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B8O  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-{[(3R,5R)-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methylpiperidin-3-yl]amino}-3-methyl-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one"  
B8O  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[[(3~{R},5~{R})-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methyl-piperidin-3-yl]amino]-3-methyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B8O  "Create component"  2019-01-22  PDBJ  
B8O  "Initial release"   2019-05-01  RCSB  
##
