data_AFO
#

_chem_comp.id                                   AFO
_chem_comp.name                                 "octyl alpha-D-arabinofuranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H26 O5"
_chem_comp.mon_nstd_parent_comp_id              BXY
_chem_comp.pdbx_synonyms                        "octyl alpha-D-arabinoside; octyl D-arabinoside; octyl arabinoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-12-06
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       262.343
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AFO
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3PTY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AFO  "octyl alpha-D-arabinoside"  PDB  ?  
2  AFO  "octyl D-arabinoside"        PDB  ?  
3  AFO  "octyl arabinoside"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AFO  C1      C1      C  0  1  N  N  S  92.542  10.115   1.816   2.251  -0.802  -0.654  C1      AFO   1  
AFO  O1      O1      O  0  1  N  N  N  93.226  10.402   3.038   1.036  -0.876   0.096  O1      AFO   2  
AFO  C2      C2      C  0  1  N  N  S  92.883   8.675   1.449   3.392  -1.481   0.128  C2      AFO   3  
AFO  O2      O2      O  0  1  N  N  N  91.722   7.926   1.065   3.996  -2.509  -0.660  O2      AFO   4  
AFO  C3      C3      C  0  1  N  N  S  93.887   8.759   0.317   4.402  -0.338   0.394  C3      AFO   5  
AFO  O3      O3      O  0  1  N  N  N  95.092   8.131   0.741   4.933  -0.425   1.718  O3      AFO   6  
AFO  C4      C4      C  0  1  N  N  R  94.141  10.246   0.114   3.515   0.923   0.236  C4      AFO   7  
AFO  O4      O4      O  0  1  N  N  N  93.069  10.938   0.770   2.623   0.573  -0.845  O4      AFO   8  
AFO  C5      C5      C  0  1  N  N  N  94.247  10.645  -1.356   4.367   2.137  -0.140  C5      AFO   9  
AFO  O5      O5      O  0  1  N  N  N  94.940  11.898  -1.462   3.545   3.306  -0.166  O5      AFO  10  
AFO  "C1'"   "C1'"   C  0  1  N  N  N  93.086  11.750   3.478  -0.124  -0.477  -0.636  "C1'"   AFO  11  
AFO  "C2'"   "C2'"   C  0  1  N  N  N  94.088  11.966   4.606  -1.358  -0.597   0.260  "C2'"   AFO  12  
AFO  "C3'"   "C3'"   C  0  1  N  N  N  93.710  13.140   5.506  -2.601  -0.170  -0.524  "C3'"   AFO  13  
AFO  "C4'"   "C4'"   C  0  1  N  N  N  94.872  13.448   6.443  -3.835  -0.289   0.372  "C4'"   AFO  14  
AFO  "C5'"   "C5'"   C  0  1  N  N  N  95.779  12.234   6.621  -5.078   0.138  -0.412  "C5'"   AFO  15  
AFO  "C6'"   "C6'"   C  0  1  N  N  N  95.182  11.178   7.548  -6.312   0.018   0.484  "C6'"   AFO  16  
AFO  "C7'"   "C7'"   C  0  1  N  N  N  96.011   9.897   7.515  -7.555   0.445  -0.300  "C7'"   AFO  17  
AFO  "C8'"   "C8'"   C  0  1  N  N  N  95.486   8.876   8.500  -8.789   0.326   0.596  "C8'"   AFO  18  
AFO  H1      H1      H  0  1  N  N  N  91.462  10.285   1.934   2.121  -1.290  -1.619  H1      AFO  19  
AFO  H2      H2      H  0  1  N  N  N  93.298   8.140   2.316   3.020  -1.891   1.067  H2      AFO  20  
AFO  HO2     HO2     H  0  1  N  Y  N  91.976   7.038   0.845   3.391  -3.222  -0.906  HO2     AFO  21  
AFO  H3      H3      H  0  1  N  N  N  93.532   8.274  -0.604   5.203  -0.347  -0.345  H3      AFO  22  
AFO  HO3     HO3     H  0  1  N  Y  N  95.735   8.174   0.043   5.420  -1.242   1.894  HO3     AFO  23  
AFO  H4      H4      H  0  1  N  N  N  95.117  10.516   0.544   2.954   1.115   1.150  H4      AFO  24  
AFO  H51     H5      H  0  1  N  N  N  94.802   9.871  -1.907   5.160   2.266   0.597  H51     AFO  25  
AFO  H52     H5A     H  0  1  N  N  N  93.238  10.746  -1.782   4.808   1.980  -1.125  H52     AFO  26  
AFO  HO5     HO5     H  0  1  N  Y  N  95.007  12.147  -2.376   4.021   4.115  -0.398  HO5     AFO  27  
AFO  "H1'"   "H1'"   H  0  1  N  N  N  93.292  12.443   2.649  -0.010   0.557  -0.962  "H1'"   AFO  28  
AFO  "H1'A"  "H1'A"  H  0  0  N  N  N  92.063  11.927   3.840  -0.243  -1.122  -1.507  "H1'A"  AFO  29  
AFO  "H2'"   "H2'"   H  0  1  N  N  N  94.124  11.054   5.220  -1.472  -1.631   0.586  "H2'"   AFO  30  
AFO  "H2'A"  "H2'A"  H  0  0  N  N  N  95.074  12.170   4.162  -1.239   0.047   1.131  "H2'A"  AFO  31  
AFO  "H3'"   "H3'"   H  0  1  N  N  N  93.492  14.023   4.887  -2.487   0.864  -0.850  "H3'"   AFO  32  
AFO  "H3'A"  "H3'A"  H  0  0  N  N  N  92.820  12.879   6.097  -2.720  -0.814  -1.395  "H3'A"  AFO  33  
AFO  "H4'"   "H4'"   H  0  1  N  N  N  95.462  14.273   6.018  -3.949  -1.323   0.698  "H4'"   AFO  34  
AFO  "H4'A"  "H4'A"  H  0  0  N  N  N  94.470  13.738   7.425  -3.716   0.355   1.243  "H4'A"  AFO  35  
AFO  "H5'"   "H5'"   H  0  1  N  N  N  95.942  11.776   5.634  -4.964   1.172  -0.738  "H5'"   AFO  36  
AFO  "H5'A"  "H5'A"  H  0  0  N  N  N  96.732  12.574   7.052  -5.197  -0.507  -1.283  "H5'A"  AFO  37  
AFO  "H6'"   "H6'"   H  0  1  N  N  N  95.168  11.570   8.576  -6.426  -1.016   0.810  "H6'"   AFO  38  
AFO  "H6'A"  "H6'A"  H  0  0  N  N  N  94.157  10.951   7.220  -6.193   0.663   1.355  "H6'A"  AFO  39  
AFO  "H7'"   "H7'"   H  0  1  N  N  N  95.965   9.470   6.502  -7.441   1.480  -0.626  "H7'"   AFO  40  
AFO  "H7'A"  "H7'A"  H  0  0  N  N  N  97.052  10.140   7.776  -7.674  -0.199  -1.171  "H7'A"  AFO  41  
AFO  "H8'"   "H8'"   H  0  1  N  N  N  96.104   7.967   8.451  -8.903  -0.708   0.922  "H8'"   AFO  42  
AFO  "H8'A"  "H8'A"  H  0  0  N  N  N  95.527   9.293   9.517  -8.670   0.970   1.467  "H8'A"  AFO  43  
AFO  "H8'B"  "H8'B"  H  0  0  N  N  N  94.445   8.625   8.248  -9.674   0.630   0.038  "H8'B"  AFO  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AFO  C1     O1      SING  N  N   1  
AFO  C1     C2      SING  N  N   2  
AFO  C1     O4      SING  N  N   3  
AFO  O1     "C1'"   SING  N  N   4  
AFO  C2     O2      SING  N  N   5  
AFO  C2     C3      SING  N  N   6  
AFO  C3     O3      SING  N  N   7  
AFO  C3     C4      SING  N  N   8  
AFO  C4     O4      SING  N  N   9  
AFO  C4     C5      SING  N  N  10  
AFO  C5     O5      SING  N  N  11  
AFO  "C1'"  "C2'"   SING  N  N  12  
AFO  "C2'"  "C3'"   SING  N  N  13  
AFO  "C3'"  "C4'"   SING  N  N  14  
AFO  "C4'"  "C5'"   SING  N  N  15  
AFO  "C5'"  "C6'"   SING  N  N  16  
AFO  "C6'"  "C7'"   SING  N  N  17  
AFO  "C7'"  "C8'"   SING  N  N  18  
AFO  C1     H1      SING  N  N  19  
AFO  C2     H2      SING  N  N  20  
AFO  O2     HO2     SING  N  N  21  
AFO  C3     H3      SING  N  N  22  
AFO  O3     HO3     SING  N  N  23  
AFO  C4     H4      SING  N  N  24  
AFO  C5     H51     SING  N  N  25  
AFO  C5     H52     SING  N  N  26  
AFO  O5     HO5     SING  N  N  27  
AFO  "C1'"  "H1'"   SING  N  N  28  
AFO  "C1'"  "H1'A"  SING  N  N  29  
AFO  "C2'"  "H2'"   SING  N  N  30  
AFO  "C2'"  "H2'A"  SING  N  N  31  
AFO  "C3'"  "H3'"   SING  N  N  32  
AFO  "C3'"  "H3'A"  SING  N  N  33  
AFO  "C4'"  "H4'"   SING  N  N  34  
AFO  "C4'"  "H4'A"  SING  N  N  35  
AFO  "C5'"  "H5'"   SING  N  N  36  
AFO  "C5'"  "H5'A"  SING  N  N  37  
AFO  "C6'"  "H6'"   SING  N  N  38  
AFO  "C6'"  "H6'A"  SING  N  N  39  
AFO  "C7'"  "H7'"   SING  N  N  40  
AFO  "C7'"  "H7'A"  SING  N  N  41  
AFO  "C8'"  "H8'"   SING  N  N  42  
AFO  "C8'"  "H8'A"  SING  N  N  43  
AFO  "C8'"  "H8'B"  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AFO  SMILES            ACDLabs               12.01  "O(CCCCCCCC)C1OC(C(O)C1O)CO"  
AFO  SMILES_CANONICAL  CACTVS                3.370  "CCCCCCCCO[C@H]1O[C@H](CO)[C@@H](O)[C@@H]1O"  
AFO  SMILES            CACTVS                3.370  "CCCCCCCCO[CH]1O[CH](CO)[CH](O)[CH]1O"  
AFO  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CCCCCCCCO[C@@H]1[C@H]([C@@H]([C@H](O1)CO)O)O"  
AFO  SMILES            "OpenEye OEToolkits"  1.7.0  "CCCCCCCCOC1C(C(C(O1)CO)O)O"  
AFO  InChI             InChI                 1.03   "InChI=1S/C13H26O5/c1-2-3-4-5-6-7-8-17-13-12(16)11(15)10(9-14)18-13/h10-16H,2-9H2,1H3/t10-,11-,12+,13+/m1/s1"  
AFO  InChIKey          InChI                 1.03   DULPXMOVQIYGDB-NDBYEHHHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AFO  "SYSTEMATIC NAME"  ACDLabs               12.01  "octyl alpha-D-arabinofuranoside"  
AFO  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2R,3S,4S,5S)-2-(hydroxymethyl)-5-octoxy-oxolane-3,4-diol"  
#
_pdbx_chem_comp_related.comp_id            AFO
_pdbx_chem_comp_related.related_comp_id    BXY
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  AFO  C1   BXY  C1   "Carbohydrate core"  
 2  AFO  C2   BXY  C2   "Carbohydrate core"  
 3  AFO  C3   BXY  C3   "Carbohydrate core"  
 4  AFO  C4   BXY  C4   "Carbohydrate core"  
 5  AFO  C5   BXY  C5   "Carbohydrate core"  
 6  AFO  O1   BXY  O1   "Carbohydrate core"  
 7  AFO  O2   BXY  O2   "Carbohydrate core"  
 8  AFO  O3   BXY  O3   "Carbohydrate core"  
 9  AFO  O4   BXY  O4   "Carbohydrate core"  
10  AFO  O5   BXY  O5   "Carbohydrate core"  
11  AFO  H1   BXY  H1   "Carbohydrate core"  
12  AFO  H2   BXY  H2   "Carbohydrate core"  
13  AFO  H3   BXY  H3   "Carbohydrate core"  
14  AFO  H4   BXY  H4   "Carbohydrate core"  
15  AFO  H51  BXY  H51  "Carbohydrate core"  
16  AFO  H52  BXY  H52  "Carbohydrate core"  
17  AFO  HO2  BXY  HO2  "Carbohydrate core"  
18  AFO  HO3  BXY  HO3  "Carbohydrate core"  
19  AFO  HO5  BXY  HO5  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
AFO  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
AFO  "CARBOHYDRATE RING"                    furanose  PDB  ?  
AFO  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
AFO  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AFO  "Create component"          2010-12-06  RCSB  
AFO  "Modify descriptor"         2011-06-04  RCSB  
AFO  "Other modification"        2020-07-03  RCSB  
AFO  "Modify parent residue"     2020-07-17  RCSB  
AFO  "Modify synonyms"           2020-07-17  RCSB  
AFO  "Modify atom id"            2020-07-17  RCSB  
AFO  "Modify component atom id"  2020-07-17  RCSB  
AFO  "Modify leaving atom flag"  2020-07-17  RCSB  
##
