data_A1AMO
# 
_chem_comp.id                                    A1AMO 
_chem_comp.name                                  "N-[2-(glycylamino)ethyl]-N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H27 N4 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-15 
_chem_comp.pdbx_modified_date                    2024-11-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        398.349 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AMO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9BE3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AMO O13  O1  O 0 1 N N N N N N -58.658 61.513 -13.290 4.388   -3.059 0.516  O13  A1AMO 1  
A1AMO O21  O2  O 0 1 N N N N N N -61.513 57.637 -12.977 4.156   2.802  0.993  O21  A1AMO 2  
A1AMO C11  C1  C 0 1 N N N N N N -59.434 63.736 -12.862 2.210   -2.059 0.442  C11  A1AMO 3  
A1AMO C12  C2  C 0 1 N N S N N N -59.826 62.271 -13.141 3.422   -2.467 -0.355 C12  A1AMO 4  
A1AMO C02  C3  C 0 1 N N N N N N -55.522 69.438 -7.070  -8.397  0.735  -0.237 C02  A1AMO 5  
A1AMO C04  C4  C 0 1 N N N N N N -57.151 69.325 -9.009  -6.043  0.124  -0.380 C04  A1AMO 6  
A1AMO C05  C5  C 0 1 N N N N N N -57.534 67.843 -8.942  -4.892  -0.206 0.573  C05  A1AMO 7  
A1AMO C07  C6  C 0 1 N N N N N N -56.475 66.077 -10.425 -2.537  -0.817 0.430  C07  A1AMO 8  
A1AMO C08  C7  C 0 1 N N N N N N -57.830 65.891 -11.140 -1.295  -1.118 -0.368 C08  A1AMO 9  
A1AMO C09  C8  C 0 1 N N N N N N -57.656 65.534 -12.630 -0.144  -1.448 0.585  C09  A1AMO 10 
A1AMO C14  C9  C 0 1 N N N N N N -60.675 62.146 -14.419 4.030   -1.235 -1.028 C14  A1AMO 11 
A1AMO C15  C10 C 0 1 N N N N N N -60.046 62.990 -15.521 3.045   -0.680 -2.059 C15  A1AMO 12 
A1AMO C16  C11 C 0 1 N N N N N N -60.742 60.707 -14.916 4.317   -0.167 0.029  C16  A1AMO 13 
A1AMO C22  C12 C 0 1 N N N N N N -62.103 62.632 -14.180 5.333   -1.626 -1.727 C22  A1AMO 14 
A1AMO C25  C13 C 0 1 N N N N N N -55.162 69.933 -5.670  -9.640  1.035  0.561  C25  A1AMO 15 
A1AMO N03  N1  N 0 1 N N N N N N -56.808 69.797 -7.674  -7.251  0.416  0.395  N03  A1AMO 16 
A1AMO N06  N2  N 0 1 N N N N N N -56.364 67.047 -9.334  -3.684  -0.498 -0.203 N06  A1AMO 17 
A1AMO N10  N3  N 0 1 N N N N N N -58.030 64.139 -12.892 1.064   -1.740 -0.191 N10  A1AMO 18 
A1AMO N29  N4  N 0 1 N N N N N N -54.754 71.320 -5.753  -10.744 1.352  -0.354 N29  A1AMO 19 
A1AMO O01  O3  O 0 1 N N N N N N -54.756 68.761 -7.664  -8.429  0.780  -1.449 O01  A1AMO 20 
A1AMO O17  O4  O 0 1 N N N N N N -60.601 59.822 -13.838 4.885   0.984  -0.600 O17  A1AMO 21 
A1AMO O19  O5  O 0 1 N N N N N N -61.992 59.687 -11.619 5.789   3.443  -0.822 O19  A1AMO 22 
A1AMO O23  O6  O 0 1 N N N N N N -60.256 64.550 -12.617 2.266   -2.017 1.652  O23  A1AMO 23 
A1AMO O24  O7  O 0 1 N N N N N N -55.533 65.431 -10.751 -2.506  -0.863 1.641  O24  A1AMO 24 
A1AMO P18  P1  P 0 1 N N N N N N -61.858 59.064 -13.127 5.313   2.306  0.214  P18  A1AMO 25 
A1AMO H131 H1  H 0 0 N N N N N N -58.130 61.586 -12.504 4.694   -2.471 1.220  H131 A1AMO 26 
A1AMO H121 H2  H 0 0 N N N N N N -60.418 61.901 -12.291 3.129   -3.190 -1.117 H121 A1AMO 27 
A1AMO H041 H3  H 0 0 N N N N N N -58.000 69.906 -9.397  -5.778  0.993  -0.982 H041 A1AMO 28 
A1AMO H042 H4  H 0 0 N N N N N N -56.286 69.451 -9.676  -6.228  -0.728 -1.035 H042 A1AMO 29 
A1AMO H052 H5  H 0 0 N N N N N N -57.835 67.582 -7.916  -4.707  0.646  1.227  H052 A1AMO 30 
A1AMO H051 H6  H 0 0 N N N N N N -58.368 67.643 -9.631  -5.156  -1.076 1.174  H051 A1AMO 31 
A1AMO H081 H7  H 0 0 N N N N N N -58.402 66.827 -11.064 -1.480  -1.969 -1.023 H081 A1AMO 32 
A1AMO H082 H8  H 0 0 N N N N N N -58.385 65.081 -10.644 -1.030  -0.248 -0.970 H082 A1AMO 33 
A1AMO H091 H9  H 0 0 N N N N N N -58.295 66.196 -13.234 0.041   -0.596 1.239  H091 A1AMO 34 
A1AMO H092 H10 H 0 0 N N N N N N -56.603 65.682 -12.913 -0.409  -2.317 1.186  H092 A1AMO 35 
A1AMO H151 H11 H 0 0 N N N N N N -60.648 62.905 -16.438 2.166   -0.287 -1.548 H151 A1AMO 36 
A1AMO H153 H12 H 0 0 N N N N N N -60.011 64.042 -15.202 3.524   0.120  -2.625 H153 A1AMO 37 
A1AMO H152 H13 H 0 0 N N N N N N -59.025 62.632 -15.719 2.744   -1.476 -2.740 H152 A1AMO 38 
A1AMO H162 H14 H 0 0 N N N N N N -59.931 60.533 -15.639 3.388   0.112  0.526  H162 A1AMO 39 
A1AMO H161 H15 H 0 0 N N N N N N -61.712 60.535 -15.405 5.019   -0.562 0.763  H161 A1AMO 40 
A1AMO H223 H16 H 0 0 N N N N N N -62.685 62.531 -15.108 5.121   -2.345 -2.517 H223 A1AMO 41 
A1AMO H221 H17 H 0 0 N N N N N N -62.568 62.027 -13.388 5.795   -0.737 -2.158 H221 A1AMO 42 
A1AMO H222 H18 H 0 0 N N N N N N -62.084 63.688 -13.872 6.014   -2.073 -1.002 H222 A1AMO 43 
A1AMO H251 H19 H 0 0 N N N N N N -56.038 69.845 -5.011  -9.904  0.166  1.162  H251 A1AMO 44 
A1AMO H252 H20 H 0 0 N N N N N N -54.336 69.329 -5.266  -9.454  1.887  1.215  H252 A1AMO 45 
A1AMO H031 H21 H 0 0 N N N N N N -57.453 70.369 -7.167  -7.225  0.379  1.364  H031 A1AMO 46 
A1AMO H061 H22 H 0 0 N N N N N N -55.493 67.167 -8.857  -3.709  -0.462 -1.172 H061 A1AMO 47 
A1AMO H101 H23 H 0 0 N N N N N N -57.321 63.462 -13.092 1.038   -1.703 -1.160 H101 A1AMO 48 
A1AMO H291 H24 H 0 0 N N N N N N -54.516 71.653 -4.841  -10.894 0.604  -1.014 H291 A1AMO 49 
A1AMO H292 H25 H 0 0 N N N N N N -53.959 71.398 -6.354  -11.590 1.557  0.157  H292 A1AMO 50 
A1AMO H2   H27 H 0 1 N N N N N N -61.821 59.006 -10.978 6.062   4.270  -0.400 H2   A1AMO 51 
A1AMO O1   O8  O 0 1 N Y N N N N -63.217 59.267 -14.026 6.523   1.952  1.215  O1   A1AMO 52 
A1AMO H1   H28 H 0 1 N N N N N N -63.548 58.419 -14.296 7.315   1.620  0.772  H1   A1AMO 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AMO C02 O01  DOUB N N 1  
A1AMO C04 N03  SING N N 2  
A1AMO C05 C04  SING N N 3  
A1AMO N06 C05  SING N N 4  
A1AMO C07 N06  SING N N 5  
A1AMO C09 C08  SING N N 6  
A1AMO N10 C09  SING N N 7  
A1AMO C11 N10  SING N N 8  
A1AMO O13 C12  SING N N 9  
A1AMO C14 C12  SING N N 10 
A1AMO C15 C14  SING N N 11 
A1AMO O17 C16  SING N N 12 
A1AMO P18 O17  SING N N 13 
A1AMO O19 P18  SING N N 14 
A1AMO O21 P18  DOUB N N 15 
A1AMO C16 C14  SING N N 16 
A1AMO C22 C14  SING N N 17 
A1AMO C12 C11  SING N N 18 
A1AMO O23 C11  DOUB N N 19 
A1AMO C08 C07  SING N N 20 
A1AMO O24 C07  DOUB N N 21 
A1AMO N03 C02  SING N N 22 
A1AMO C25 C02  SING N N 23 
A1AMO N29 C25  SING N N 24 
A1AMO O13 H131 SING N N 25 
A1AMO C12 H121 SING N N 26 
A1AMO C04 H041 SING N N 27 
A1AMO C04 H042 SING N N 28 
A1AMO C05 H052 SING N N 29 
A1AMO C05 H051 SING N N 30 
A1AMO C08 H081 SING N N 31 
A1AMO C08 H082 SING N N 32 
A1AMO C09 H091 SING N N 33 
A1AMO C09 H092 SING N N 34 
A1AMO C15 H151 SING N N 35 
A1AMO C15 H153 SING N N 36 
A1AMO C15 H152 SING N N 37 
A1AMO C16 H162 SING N N 38 
A1AMO C16 H161 SING N N 39 
A1AMO C22 H223 SING N N 40 
A1AMO C22 H221 SING N N 41 
A1AMO C22 H222 SING N N 42 
A1AMO C25 H251 SING N N 43 
A1AMO C25 H252 SING N N 44 
A1AMO N03 H031 SING N N 45 
A1AMO N06 H061 SING N N 46 
A1AMO N10 H101 SING N N 47 
A1AMO N29 H291 SING N N 48 
A1AMO N29 H292 SING N N 49 
A1AMO O19 H2   SING N N 50 
A1AMO P18 O1   SING N N 51 
A1AMO O1  H1   SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AMO SMILES           ACDLabs              12.01 "O=P(O)(O)OCC(C)(C)C(O)C(=O)NCCC(=O)NCCNC(=O)CN"                                                                                                             
A1AMO InChI            InChI                1.06  "InChI=1S/C13H27N4O8P/c1-13(2,8-25-26(22,23)24)11(20)12(21)17-4-3-9(18)15-5-6-16-10(19)7-14/h11,20H,3-8,14H2,1-2H3,(H,15,18)(H,16,19)(H,17,21)(H2,22,23,24)" 
A1AMO InChIKey         InChI                1.06  ZCWBBGZAVLIBIM-UHFFFAOYSA-N                                                                                                                                  
A1AMO SMILES_CANONICAL CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[C@H](O)C(=O)NCCC(=O)NCCNC(=O)CN"                                                                                                       
A1AMO SMILES           CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCNC(=O)CN"                                                                                                        
A1AMO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCNC(=O)CN)O"                                                                                                         
A1AMO SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCNC(=O)CN)O"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AMO "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-(glycylamino)ethyl]-N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide"                                                  
A1AMO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-4-[[3-[2-(2-azanylethanoylamino)ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AMO "Create component" 2024-04-15 RCSB 
A1AMO "Modify PCM"       2024-09-27 PDBE 
A1AMO "Initial release"  2024-11-20 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1AMO 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P18 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
