data_58O
#

_chem_comp.id                                   58O
_chem_comp.name                                 "6-methoxy-5-[(4-{[6-(2,2,2-trifluoroethyl)thieno[2,3-d]pyrimidin-4-yl]amino}piperidin-1-yl)methyl]-1H-indole-2-carbonitrile"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H23 F3 N6 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        MI-336
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-08-21
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       500.539
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    58O
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5DB1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
58O  C4   C1   C  0  1  Y  N  N  -11.056   7.585  12.499  -5.283  -1.550  -0.631  C4   58O   1  
58O  C5   C2   C  0  1  Y  N  N  -10.773   8.924  12.349  -4.140  -0.861  -0.213  C5   58O   2  
58O  C6   C3   C  0  1  Y  N  N  -11.839   9.749  11.957  -2.880  -1.403  -0.573  C6   58O   3  
58O  N1   N1   N  0  1  Y  N  N  -13.052   9.231  11.689  -2.842  -2.523  -1.280  N1   58O   4  
58O  N3   N2   N  0  1  Y  N  N  -12.285   7.050  12.254  -5.141  -2.673  -1.347  N3   58O   5  
58O  FAC  F1   F  0  1  N  N  N   -5.162   7.651  12.420  -7.441   2.495  -0.534  FAC  58O   6  
58O  CBI  C4   C  0  1  N  N  N   -6.420   7.584  12.133  -6.559   2.886   0.478  CBI  58O   7  
58O  FAD  F2   F  0  1  N  N  N   -6.724   6.332  11.859  -5.333   3.255  -0.087  FAD  58O   8  
58O  FAE  F3   F  0  1  N  N  N   -6.653   8.290  11.072  -7.098   3.975   1.172  FAE  58O   9  
58O  CAQ  C5   C  0  1  N  N  N   -7.240   8.121  13.321  -6.344   1.720   1.446  CAQ  58O  10  
58O  CAY  C6   C  0  1  Y  N  N   -8.700   8.082  12.982  -5.763   0.548   0.698  CAY  58O  11  
58O  SAW  S1   S  0  1  Y  N  N   -9.682   6.754  13.026  -6.719  -0.702  -0.076  SAW  58O  12  
58O  CAJ  C7   C  0  1  Y  N  N   -9.458   9.183  12.631  -4.471   0.332   0.543  CAJ  58O  13  
58O  C2   C8   C  0  1  Y  N  N  -13.314   7.875  11.853  -3.951  -3.136  -1.651  C2   58O  14  
58O  NAT  N3   N  0  1  N  N  N  -11.647  11.081  11.783  -1.709  -0.771  -0.193  NAT  58O  15  
58O  CBG  C9   C  0  1  N  N  N  -12.721  12.044  11.364  -0.414  -1.341  -0.571  CBG  58O  16  
58O  CAM  C10  C  0  1  N  N  N  -12.623  13.170  12.353   0.641  -0.232  -0.609  CAM  58O  17  
58O  CAO  C11  C  0  1  N  N  N  -13.665  14.252  12.037   2.004  -0.842  -0.945  CAO  58O  18  
58O  CAL  C12  C  0  1  N  N  N  -12.485  12.519   9.962   0.002  -2.395   0.458  CAL  58O  19  
58O  CAN  C13  C  0  1  N  N  N  -13.351  13.771   9.660   1.383  -2.943   0.091  CAN  58O  20  
58O  NBH  N4   N  0  1  N  N  N  -13.231  14.834  10.703   2.357  -1.844   0.069  NBH  58O  21  
58O  CAP  C14  C  0  1  N  N  N  -14.157  15.962  10.291   3.719  -2.351  -0.143  CAP  58O  22  
58O  CAZ  C15  C  0  1  Y  N  N  -14.048  17.190  11.120   4.710  -1.239   0.083  CAZ  58O  23  
58O  CAI  C16  C  0  1  Y  N  N  -15.160  17.727  11.821   5.238  -0.575  -0.985  CAI  58O  24  
58O  CBC  C17  C  0  1  Y  N  N  -15.111  18.847  12.538   6.159   0.460  -0.779  CBC  58O  25  
58O  CAH  C18  C  0  1  Y  N  N  -16.070  19.500  13.272   6.867   1.318  -1.655  CAH  58O  26  
58O  CAX  C19  C  0  1  Y  N  N  -15.474  20.582  13.790   7.635   2.145  -0.895  CAX  58O  27  
58O  CAF  C20  C  0  1  N  N  N  -16.013  21.660  14.663   8.505   3.164  -1.398  CAF  58O  28  
58O  NAB  N5   N  0  1  N  N  N  -16.422  22.455  15.308   9.195   3.974  -1.797  NAB  58O  29  
58O  NAU  N6   N  0  1  Y  N  N  -14.193  20.632  13.409   7.441   1.843   0.440  NAU  58O  30  
58O  CBD  C21  C  0  1  Y  N  N  -13.955  19.556  12.640   6.536   0.810   0.533  CBD  58O  31  
58O  CAK  C22  C  0  1  Y  N  N  -12.843  19.145  11.993   5.989   0.121   1.610  CAK  58O  32  
58O  CBA  C23  C  0  1  Y  N  N  -12.881  17.954  11.218   5.076  -0.893   1.383  CBA  58O  33  
58O  OAV  O1   O  0  1  N  N  N  -11.822  17.442  10.530   4.537  -1.562   2.436  OAV  58O  34  
58O  CAA  C24  C  0  1  N  N  N  -10.528  18.042  10.644   4.953  -1.160   3.742  CAA  58O  35  
58O  H1   H1   H  0  1  N  N  N   -7.053   7.497  14.207  -5.656   2.025   2.235  H1   58O  36  
58O  H2   H2   H  0  1  N  N  N   -6.941   9.158  13.533  -7.299   1.434   1.887  H2   58O  37  
58O  H3   H3   H  0  1  N  N  N   -9.042  10.179  12.582  -3.718   0.991   0.948  H3   58O  38  
58O  H4   H4   H  0  1  N  N  N  -14.301   7.477  11.670  -3.877  -4.047  -2.227  H4   58O  39  
58O  H5   H5   H  0  1  N  N  N  -10.928  11.162  11.093  -1.746   0.048   0.324  H5   58O  40  
58O  H6   H6   H  0  1  N  N  N  -13.707  11.563  11.438  -0.492  -1.803  -1.556  H6   58O  41  
58O  H7   H7   H  0  1  N  N  N  -12.802  12.779  13.366   0.373   0.500  -1.371  H7   58O  42  
58O  H8   H8   H  0  1  N  N  N  -11.616  13.610  12.302   0.691   0.257   0.364  H8   58O  43  
58O  H9   H9   H  0  1  N  N  N  -13.665  15.028  12.816   1.957  -1.318  -1.924  H9   58O  44  
58O  H10  H10  H  0  1  N  N  N  -14.670  13.811  11.958   2.760  -0.057  -0.958  H10  58O  45  
58O  H11  H11  H  0  1  N  N  N  -12.751  11.716   9.258   0.042  -1.941   1.449  H11  58O  46  
58O  H12  H12  H  0  1  N  N  N  -11.422  12.776   9.841  -0.724  -3.208   0.460  H12  58O  47  
58O  H13  H13  H  0  1  N  N  N  -13.034  14.191   8.694   1.689  -3.683   0.831  H13  58O  48  
58O  H14  H14  H  0  1  N  N  N  -14.404  13.461   9.596   1.340  -3.409  -0.893  H14  58O  49  
58O  H16  H16  H  0  1  N  N  N  -13.927  16.231   9.249   3.918  -3.163   0.557  H16  58O  50  
58O  H17  H17  H  0  1  N  N  N  -15.192  15.596  10.356   3.814  -2.720  -1.164  H17  58O  51  
58O  H18  H18  H  0  1  N  N  N  -16.099  17.196  11.769   4.945  -0.847  -1.988  H18  58O  52  
58O  H19  H19  H  0  1  N  N  N  -17.099  19.201  13.405   6.808   1.316  -2.733  H19  58O  53  
58O  H20  H20  H  0  1  N  N  N  -13.532  21.342  13.652   7.871   2.287   1.187  H20  58O  54  
58O  H21  H21  H  0  1  N  N  N  -11.930  19.718  12.064   6.271   0.380   2.619  H21  58O  55  
58O  H22  H22  H  0  1  N  N  N   -9.811  17.490  10.018   4.449  -1.772   4.489  H22  58O  56  
58O  H23  H23  H  0  1  N  N  N  -10.578  19.088  10.308   6.032  -1.288   3.835  H23  58O  57  
58O  H24  H24  H  0  1  N  N  N  -10.200  18.009  11.693   4.698  -0.112   3.898  H24  58O  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
58O  CAN  CAL  SING  N  N   1  
58O  CAN  NBH  SING  N  N   2  
58O  CAL  CBG  SING  N  N   3  
58O  CAP  NBH  SING  N  N   4  
58O  CAP  CAZ  SING  N  N   5  
58O  OAV  CAA  SING  N  N   6  
58O  OAV  CBA  SING  N  N   7  
58O  NBH  CAO  SING  N  N   8  
58O  FAE  CBI  SING  N  N   9  
58O  CAZ  CBA  DOUB  Y  N  10  
58O  CAZ  CAI  SING  Y  N  11  
58O  CBA  CAK  SING  Y  N  12  
58O  CBG  NAT  SING  N  N  13  
58O  CBG  CAM  SING  N  N  14  
58O  N1   C2   DOUB  Y  N  15  
58O  N1   C6   SING  Y  N  16  
58O  NAT  C6   SING  N  N  17  
58O  CAI  CBC  DOUB  Y  N  18  
58O  C2   N3   SING  Y  N  19  
58O  FAD  CBI  SING  N  N  20  
58O  C6   C5   DOUB  Y  N  21  
58O  CAK  CBD  DOUB  Y  N  22  
58O  CAO  CAM  SING  N  N  23  
58O  CBI  FAC  SING  N  N  24  
58O  CBI  CAQ  SING  N  N  25  
58O  N3   C4   DOUB  Y  N  26  
58O  C5   C4   SING  Y  N  27  
58O  C5   CAJ  SING  Y  N  28  
58O  C4   SAW  SING  Y  N  29  
58O  CBC  CBD  SING  Y  N  30  
58O  CBC  CAH  SING  Y  N  31  
58O  CAJ  CAY  DOUB  Y  N  32  
58O  CBD  NAU  SING  Y  N  33  
58O  CAY  SAW  SING  Y  N  34  
58O  CAY  CAQ  SING  N  N  35  
58O  CAH  CAX  DOUB  Y  N  36  
58O  NAU  CAX  SING  Y  N  37  
58O  CAX  CAF  SING  N  N  38  
58O  CAF  NAB  TRIP  N  N  39  
58O  CAQ  H1   SING  N  N  40  
58O  CAQ  H2   SING  N  N  41  
58O  CAJ  H3   SING  N  N  42  
58O  C2   H4   SING  N  N  43  
58O  NAT  H5   SING  N  N  44  
58O  CBG  H6   SING  N  N  45  
58O  CAM  H7   SING  N  N  46  
58O  CAM  H8   SING  N  N  47  
58O  CAO  H9   SING  N  N  48  
58O  CAO  H10  SING  N  N  49  
58O  CAL  H11  SING  N  N  50  
58O  CAL  H12  SING  N  N  51  
58O  CAN  H13  SING  N  N  52  
58O  CAN  H14  SING  N  N  53  
58O  CAP  H16  SING  N  N  54  
58O  CAP  H17  SING  N  N  55  
58O  CAI  H18  SING  N  N  56  
58O  CAH  H19  SING  N  N  57  
58O  NAU  H20  SING  N  N  58  
58O  CAK  H21  SING  N  N  59  
58O  CAA  H22  SING  N  N  60  
58O  CAA  H23  SING  N  N  61  
58O  CAA  H24  SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
58O  SMILES            ACDLabs               12.01  "c12sc(CC(F)(F)F)cc1c(ncn2)NC3CCN(CC3)Cc4c(cc5c(c4)cc(C#N)n5)OC"  
58O  InChI             InChI                 1.03   "InChI=1S/C24H23F3N6OS/c1-34-21-9-20-14(7-17(11-28)31-20)6-15(21)12-33-4-2-16(3-5-33)32-22-19-8-18(10-24(25,26)27)35-23(19)30-13-29-22/h6-9,13,16,31H,2-5,10,12H2,1H3,(H,29,30,32)"  
58O  InChIKey          InChI                 1.03   ZIAHUDJHXDVKDL-UHFFFAOYSA-N  
58O  SMILES_CANONICAL  CACTVS                3.385  "COc1cc2[nH]c(cc2cc1CN3CCC(CC3)Nc4ncnc5sc(CC(F)(F)F)cc45)C#N"  
58O  SMILES            CACTVS                3.385  "COc1cc2[nH]c(cc2cc1CN3CCC(CC3)Nc4ncnc5sc(CC(F)(F)F)cc45)C#N"  
58O  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "COc1cc2c(cc1CN3CCC(CC3)Nc4c5cc(sc5ncn4)CC(F)(F)F)cc([nH]2)C#N"  
58O  SMILES            "OpenEye OEToolkits"  1.9.2  "COc1cc2c(cc1CN3CCC(CC3)Nc4c5cc(sc5ncn4)CC(F)(F)F)cc([nH]2)C#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
58O  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-methoxy-5-[(4-{[6-(2,2,2-trifluoroethyl)thieno[2,3-d]pyrimidin-4-yl]amino}piperidin-1-yl)methyl]-1H-indole-2-carbonitrile"  
58O  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "6-methoxy-5-[[4-[[6-[2,2,2-tris(fluoranyl)ethyl]thieno[2,3-d]pyrimidin-4-yl]amino]piperidin-1-yl]methyl]-1H-indole-2-carbonitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
58O  "Create component"  2015-08-21  RCSB  
58O  "Modify synonyms"   2015-08-27  RCSB  
58O  "Initial release"   2016-03-30  RCSB  
58O  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     58O
_pdbx_chem_comp_synonyms.name        MI-336
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
