data_52O
# 
_chem_comp.id                                    52O 
_chem_comp.name                                  "pivalyl-coenzyme A" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H44 N7 O17 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-07-16 
_chem_comp.pdbx_modified_date                    2015-09-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        851.651 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     52O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5CJW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
52O O3  O1  O 0 1 N N N -208.012 -104.914 -36.615 -7.861  2.648  1.004  O3  52O 1  
52O C4  C1  C 0 1 N N R -210.059 -104.819 -35.319 -5.459  2.450  0.600  C4  52O 2  
52O C5  C2  C 0 1 N N N -208.426 -104.988 -32.167 -5.156  -0.884 -0.845 C5  52O 3  
52O O4  O2  O 0 1 N N N -209.466 -104.067 -31.781 -3.939  -1.469 -0.378 O4  52O 4  
52O C6  C3  C 0 1 Y N N -212.004 -103.314 -35.955 -5.008  4.934  0.779  C6  52O 5  
52O N1  N1  N 0 1 Y N N -211.202 -103.955 -35.042 -4.881  3.720  0.153  N1  52O 6  
52O C7  C4  C 0 1 Y N N -211.714 -103.638 -33.811 -4.119  3.911  -0.961 C7  52O 7  
52O C8  C5  C 0 1 Y N N -212.965 -102.649 -35.210 -4.292  5.852  -0.008 C8  52O 8  
52O N2  N2  N 0 1 Y N N -212.768 -102.860 -33.854 -3.774  5.163  -1.053 N2  52O 9  
52O C9  C6  C 0 1 N N N -209.391 -100.640 -26.025 2.113   -5.214 1.772  C9  52O 10 
52O O5  O3  O 0 1 N N N -206.608 -101.692 -35.975 -10.130 -1.328 0.985  O5  52O 11 
52O C10 C7  C 0 1 N N R -208.742 -100.692 -24.619 3.400   -6.038 1.697  C10 52O 12 
52O O6  O4  O 0 1 N N N -205.793 -103.838 -36.936 -8.656  -1.768 -1.016 O6  52O 13 
52O C11 C8  C 0 1 N N N -209.544 -102.041 -26.615 1.598   -4.942 0.357  C11 52O 14 
52O C12 C9  C 0 1 Y N N -213.928 -101.913 -35.924 -4.254  7.194  0.407  C12 52O 15 
52O N3  N3  N 0 1 Y N N -211.891 -103.326 -37.288 -5.623  5.365  1.875  N3  52O 16 
52O C13 C10 C 0 1 N N N -208.517 -99.807  -26.969 1.055   -5.992 2.558  C13 52O 17 
52O O7  O5  O 0 1 N N N -210.748 -103.281 -29.691 -1.784  -2.975 -0.424 O7  52O 18 
52O C14 C11 C 0 1 N N N -210.779 -99.997  -25.929 2.397   -3.886 2.475  C14 52O 19 
52O O8  O6  O 0 1 N N N -210.745 -102.121 -27.396 0.396   -4.173 0.427  O8  52O 20 
52O C15 C12 C 0 1 Y N N -212.853 -102.592 -37.855 -5.564  6.633  2.223  C15 52O 21 
52O N4  N4  N 0 1 Y N N -213.839 -101.904 -37.272 -4.896  7.531  1.521  N4  52O 22 
52O O9  O7  O 0 1 N N N -204.453 -102.687 -35.141 -10.124 0.284  -1.092 O9  52O 23 
52O P1  P1  P 0 1 N N N -205.818 -102.968 -35.674 -9.221  -0.687 -0.179 P1  52O 24 
52O O2  O8  O 0 1 N N N -206.677 -103.790 -34.582 -8.022  0.161  0.482  O2  52O 25 
52O C1  C13 C 0 1 N N S -208.113 -103.834 -34.437 -6.982  0.768  -0.287 C1  52O 26 
52O C2  C14 C 0 1 N N R -208.801 -104.076 -35.777 -6.884  2.277  0.030  C2  52O 27 
52O N5  N5  N 0 1 N N N -214.923 -101.233 -35.346 -3.564  8.143  -0.326 N5  52O 28 
52O O1  O9  O 0 1 N N N -209.726 -105.515 -34.131 -4.709  1.339  0.062  O1  52O 29 
52O C3  C15 C 0 1 N N R -208.416 -105.116 -33.670 -5.604  0.207  0.130  C3  52O 30 
52O P2  P2  P 0 1 N N N -209.354 -103.185 -30.457 -3.180  -2.655 -1.160 P2  52O 31 
52O O12 O10 O 0 1 N N N -209.022 -101.766 -30.719 -2.917  -2.237 -2.555 O12 52O 32 
52O O10 O11 O 0 1 N N N -208.292 -103.808 -29.551 -4.102  -3.974 -1.160 O10 52O 33 
52O P3  P3  P 0 1 N N N -211.098 -103.478 -28.149 -0.422  -3.704 -0.878 P3  52O 34 
52O O14 O12 O 0 1 N N N -210.380 -104.661 -27.615 0.476   -2.678 -1.734 O14 52O 35 
52O O13 O13 O 0 1 N N N -212.601 -103.676 -28.036 -0.748  -4.885 -1.708 O13 52O 36 
52O O11 O14 O 0 1 N N N -208.324 -99.389  -24.256 3.109   -7.330 1.161  O11 52O 37 
52O C16 C16 C 0 1 N N N -209.681 -101.238 -23.555 4.393   -5.337 0.805  C16 52O 38 
52O O15 O15 O 0 1 N N N -210.017 -102.420 -23.570 4.698   -5.824 -0.263 O15 52O 39 
52O N6  N6  N 0 1 N N N -210.085 -100.375 -22.626 4.942   -4.170 1.196  N6  52O 40 
52O C17 C17 C 0 1 N N N -210.880 -100.768 -21.474 5.833   -3.440 0.289  C17 52O 41 
52O C18 C18 C 0 1 N N N -210.393 -100.084 -20.221 6.315   -2.158 0.971  C18 52O 42 
52O C19 C19 C 0 1 N N N -211.354 -100.227 -19.070 7.231   -1.408 0.039  C19 52O 43 
52O O16 O16 O 0 1 N N N -212.400 -100.862 -19.177 7.474   -1.854 -1.062 O16 52O 44 
52O N7  N7  N 0 1 N N N -210.994 -99.616  -17.948 7.780   -0.240 0.429  N7  52O 45 
52O C20 C20 C 0 1 N N N -211.816 -99.587  -16.749 8.671   0.489  -0.477 C20 52O 46 
52O C21 C21 C 0 1 N N N -211.175 -98.651  -15.745 9.153   1.771  0.205  C21 52O 47 
52O S1  S1  S 0 1 N N N -212.060 -98.460  -14.176 10.253  2.673  -0.915 S1  52O 48 
52O C22 C22 C 0 1 N N N -210.985 -97.362  -13.316 10.636  4.022  0.067  C22 52O 49 
52O O17 O17 O 0 1 N N N -209.968 -96.937  -13.792 10.164  4.115  1.181  O17 52O 50 
52O C23 C23 C 0 1 N N N -211.473 -97.013  -11.936 11.558  5.095  -0.452 C23 52O 51 
52O C24 C24 C 0 1 N N N -210.375 -97.225  -10.922 12.920  4.480  -0.783 C24 52O 52 
52O C25 C25 C 0 1 N N N -212.638 -97.886  -11.573 10.958  5.715  -1.716 C25 52O 53 
52O C26 C26 C 0 1 N N N -211.905 -95.571  -11.909 11.733  6.178  0.614  C26 52O 54 
52O H1  H1  H 0 1 N N N -207.159 -104.517 -36.748 -7.806  3.572  1.285  H1  52O 55 
52O H2  H2  H 0 1 N N N -210.335 -105.539 -36.104 -5.476  2.404  1.689  H2  52O 56 
52O H3  H3  H 0 1 N N N -208.618 -105.972 -31.714 -4.996  -0.448 -1.830 H3  52O 57 
52O H4  H4  H 0 1 N N N -207.452 -104.610 -31.823 -5.927  -1.652 -0.908 H4  52O 58 
52O H5  H5  H 0 1 N N N -211.287 -103.998 -32.887 -3.842  3.139  -1.662 H5  52O 59 
52O H6  H6  H 0 1 N N N -206.912 -101.712 -36.875 -10.873 -1.854 0.659  H6  52O 60 
52O H7  H7  H 0 1 N N N -207.867 -101.356 -24.677 3.822   -6.145 2.696  H7  52O 61 
52O H8  H8  H 0 1 N N N -209.592 -102.776 -25.798 2.351   -4.388 -0.203 H8  52O 62 
52O H9  H9  H 0 1 N N N -208.678 -102.262 -27.256 1.396   -5.889 -0.144 H9  52O 63 
52O H10 H10 H 0 1 N N N -208.396 -98.793  -26.559 0.120   -5.433 2.560  H10 52O 64 
52O H11 H11 H 0 1 N N N -207.530 -100.282 -27.069 0.897   -6.964 2.091  H11 52O 65 
52O H12 H12 H 0 1 N N N -208.997 -99.748  -27.957 1.396   -6.133 3.584  H12 52O 66 
52O H13 H13 H 0 1 N N N -211.412 -100.590 -25.253 3.063   -3.283 1.858  H13 52O 67 
52O H14 H14 H 0 1 N N N -210.683 -98.973  -25.538 1.461   -3.349 2.631  H14 52O 68 
52O H15 H15 H 0 1 N N N -211.238 -99.966  -26.928 2.870   -4.079 3.439  H15 52O 69 
52O H16 H16 H 0 1 N N N -212.830 -102.549 -38.934 -6.076  6.951  3.120  H16 52O 70 
52O H17 H17 H 0 1 N N N -203.804 -103.108 -35.693 -10.527 1.017  -0.607 H17 52O 71 
52O H18 H18 H 0 1 N N N -208.520 -102.949 -33.926 -7.153  0.609  -1.351 H18 52O 72 
52O H19 H19 H 0 1 N N N -209.063 -103.124 -36.261 -7.007  2.869  -0.877 H19 52O 73 
52O H20 H20 H 0 1 N N N -215.482 -100.796 -36.051 -3.099  7.885  -1.138 H20 52O 74 
52O H21 H21 H 0 1 N N N -215.490 -101.861 -34.813 -3.546  9.066  -0.030 H21 52O 75 
52O H22 H22 H 0 1 N N N -207.676 -105.878 -33.955 -5.644  -0.184 1.146  H22 52O 76 
52O H23 H23 H 0 1 N N N -207.634 -103.157 -29.340 -4.315  -4.305 -0.276 H23 52O 77 
52O H24 H24 H 0 1 N N N -211.010 -105.303 -27.310 0.727   -1.878 -1.251 H24 52O 78 
52O H25 H25 H 0 1 N N N -207.925 -99.413  -23.394 2.730   -7.311 0.272  H25 52O 79 
52O H26 H26 H 0 1 N N N -209.830 -99.413  -22.725 4.748   -3.813 2.076  H26 52O 80 
52O H27 H27 H 0 1 N N N -211.930 -100.491 -21.650 6.691   -4.065 0.042  H27 52O 81 
52O H28 H28 H 0 1 N N N -210.806 -101.857 -21.341 5.293   -3.185 -0.623 H28 52O 82 
52O H29 H29 H 0 1 N N N -209.428 -100.526 -19.931 5.457   -1.533 1.219  H29 52O 83 
52O H30 H30 H 0 1 N N N -210.257 -99.014  -20.435 6.855   -2.413 1.884  H30 52O 84 
52O H31 H31 H 0 1 N N N -210.109 -99.150  -17.926 7.586   0.117  1.310  H31 52O 85 
52O H32 H32 H 0 1 N N N -212.825 -99.227  -17.000 9.529   -0.135 -0.725 H32 52O 86 
52O H33 H33 H 0 1 N N N -211.884 -100.598 -16.322 8.131   0.744  -1.389 H33 52O 87 
52O H34 H34 H 0 1 N N N -210.168 -99.033  -15.521 8.295   2.396  0.453  H34 52O 88 
52O H35 H35 H 0 1 N N N -211.095 -97.658  -16.211 9.693   1.517  1.117  H35 52O 89 
52O H36 H36 H 0 1 N N N -210.746 -96.966  -9.919  12.795  3.709  -1.543 H36 52O 90 
52O H37 H37 H 0 1 N N N -210.062 -98.279  -10.936 13.587  5.256  -1.159 H37 52O 91 
52O H38 H38 H 0 1 N N N -209.517 -96.584  -11.172 13.347  4.038  0.117  H38 52O 92 
52O H39 H39 H 0 1 N N N -212.991 -97.627  -10.564 9.988   6.153  -1.480 H39 52O 93 
52O H40 H40 H 0 1 N N N -213.452 -97.731  -12.297 11.625  6.491  -2.092 H40 52O 94 
52O H41 H41 H 0 1 N N N -212.326 -98.941  -11.593 10.834  4.944  -2.476 H41 52O 95 
52O H42 H42 H 0 1 N N N -212.262 -95.314  -10.901 12.160  5.736  1.514  H42 52O 96 
52O H43 H43 H 0 1 N N N -211.052 -94.928  -12.171 12.400  6.954  0.238  H43 52O 97 
52O H44 H44 H 0 1 N N N -212.716 -95.418  -12.636 10.763  6.616  0.850  H44 52O 98 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
52O C15 N3  DOUB Y N 1   
52O C15 N4  SING Y N 2   
52O N3  C6  SING Y N 3   
52O N4  C12 DOUB Y N 4   
52O O6  P1  DOUB N N 5   
52O O3  C2  SING N N 6   
52O O5  P1  SING N N 7   
52O C6  C8  DOUB Y N 8   
52O C6  N1  SING Y N 9   
52O C12 N5  SING N N 10  
52O C12 C8  SING Y N 11  
52O C2  C4  SING N N 12  
52O C2  C1  SING N N 13  
52O P1  O9  SING N N 14  
52O P1  O2  SING N N 15  
52O C4  N1  SING N N 16  
52O C4  O1  SING N N 17  
52O C8  N2  SING Y N 18  
52O N1  C7  SING Y N 19  
52O O2  C1  SING N N 20  
52O C1  C3  SING N N 21  
52O O1  C3  SING N N 22  
52O N2  C7  DOUB Y N 23  
52O C3  C5  SING N N 24  
52O C5  O4  SING N N 25  
52O O4  P2  SING N N 26  
52O O12 P2  DOUB N N 27  
52O P2  O7  SING N N 28  
52O P2  O10 SING N N 29  
52O O7  P3  SING N N 30  
52O P3  O13 DOUB N N 31  
52O P3  O14 SING N N 32  
52O P3  O8  SING N N 33  
52O O8  C11 SING N N 34  
52O C13 C9  SING N N 35  
52O C11 C9  SING N N 36  
52O C9  C14 SING N N 37  
52O C9  C10 SING N N 38  
52O C10 O11 SING N N 39  
52O C10 C16 SING N N 40  
52O O15 C16 DOUB N N 41  
52O C16 N6  SING N N 42  
52O N6  C17 SING N N 43  
52O C17 C18 SING N N 44  
52O C18 C19 SING N N 45  
52O O16 C19 DOUB N N 46  
52O C19 N7  SING N N 47  
52O N7  C20 SING N N 48  
52O C20 C21 SING N N 49  
52O C21 S1  SING N N 50  
52O S1  C22 SING N N 51  
52O O17 C22 DOUB N N 52  
52O C22 C23 SING N N 53  
52O C23 C26 SING N N 54  
52O C23 C25 SING N N 55  
52O C23 C24 SING N N 56  
52O O3  H1  SING N N 57  
52O C4  H2  SING N N 58  
52O C5  H3  SING N N 59  
52O C5  H4  SING N N 60  
52O C7  H5  SING N N 61  
52O O5  H6  SING N N 62  
52O C10 H7  SING N N 63  
52O C11 H8  SING N N 64  
52O C11 H9  SING N N 65  
52O C13 H10 SING N N 66  
52O C13 H11 SING N N 67  
52O C13 H12 SING N N 68  
52O C14 H13 SING N N 69  
52O C14 H14 SING N N 70  
52O C14 H15 SING N N 71  
52O C15 H16 SING N N 72  
52O O9  H17 SING N N 73  
52O C1  H18 SING N N 74  
52O C2  H19 SING N N 75  
52O N5  H20 SING N N 76  
52O N5  H21 SING N N 77  
52O C3  H22 SING N N 78  
52O O10 H23 SING N N 79  
52O O14 H24 SING N N 80  
52O O11 H25 SING N N 81  
52O N6  H26 SING N N 82  
52O C17 H27 SING N N 83  
52O C17 H28 SING N N 84  
52O C18 H29 SING N N 85  
52O C18 H30 SING N N 86  
52O N7  H31 SING N N 87  
52O C20 H32 SING N N 88  
52O C20 H33 SING N N 89  
52O C21 H34 SING N N 90  
52O C21 H35 SING N N 91  
52O C24 H36 SING N N 92  
52O C24 H37 SING N N 93  
52O C24 H38 SING N N 94  
52O C25 H39 SING N N 95  
52O C25 H40 SING N N 96  
52O C25 H41 SING N N 97  
52O C26 H42 SING N N 98  
52O C26 H43 SING N N 99  
52O C26 H44 SING N N 100 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
52O SMILES           ACDLabs              12.01 "OC3C(n1c2c(nc1)c(N)ncn2)OC(COP(OP(OCC(C)(C(O)C(NCCC(NCCSC(C(C)(C)C)=O)=O)=O)C)(=O)O)(O)=O)C3OP(O)(=O)O" 
52O InChI            InChI                1.03  
;InChI=1S/C26H44N7O17P3S/c1-25(2,3)24(38)54-9-8-28-15(34)6-7-29-22(37)19(36)26(4,5)11-47-53(44,45)50-52(42,43)46-10-14-18(49-51(39,40)41)17(35)23(48-14)33-13-32-16-20(27)30-12-31-21(16)33/h12-14,17-19,23,35-36H,6-11H2,1-5H3,(H,28,34)(H,29,37)(H,42,43)(H,44,45)(H2,27,30,31)(H2,39,40,41)/t14-,17-,18-,19+,23-/m1/s1
;
52O InChIKey         InChI                1.03  FCMKBHDFOPWWQK-NDZSKPAWSA-N 
52O SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 
52O SMILES           CACTVS               3.385 "CC(C)(C)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 
52O SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)(C)C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" 
52O SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C)(C)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
52O "SYSTEMATIC NAME" ACDLabs              12.01 
;S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} 2,2-dimethylpropanethioate (non-preferred name)
;
52O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
"S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2,2-dimethylpropanethioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
52O "Create component" 2015-07-16 RCSB 
52O "Initial release"  2015-09-09 RCSB 
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