data_48O
# 
_chem_comp.id                                    48O 
_chem_comp.name                                  "5'-deoxy-5'-{[(2S)-2-(triaza-1,2-dien-2-ium-1-yl)propanoyl]amino}uridine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N6 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2015-02-12 
_chem_comp.pdbx_modified_date                    2015-09-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        341.300 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     48O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Y63 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
48O N1  NAV N 0 1 N N N 14.409 19.066 9.594  -5.817 -0.718 -0.303 NAV 48O 1  
48O O1  OAG O 0 1 N N N 18.276 24.635 6.826  3.772  -0.370 2.126  OAG 48O 2  
48O C1  CAB C 0 1 N N N 17.693 24.058 7.740  3.731  -0.836 1.004  CAB 48O 3  
48O N2  NAA N 0 1 N N N 18.227 24.097 9.026  4.578  -1.826 0.665  NAA 48O 4  
48O C2  CAC C 0 1 N N N 17.601 23.459 10.091 4.546  -2.354 -0.575 CAC 48O 5  
48O O2  OAH O 0 1 N N N 18.118 23.524 11.207 5.311  -3.249 -0.882 OAH 48O 6  
48O C3  CAE C 0 1 N N N 16.417 22.766 9.858  3.612  -1.857 -1.517 CAE 48O 7  
48O C4  CAF C 0 1 N N N 15.897 22.738 8.562  2.774  -0.864 -1.150 CAF 48O 8  
48O N3  NAD N 0 1 N N N 16.553 23.394 7.499  2.836  -0.359 0.120  NAD 48O 9  
48O C5  CAI C 0 1 N N R 16.021 23.390 6.107  1.924  0.715  0.519  CAI 48O 10 
48O O3  OAL O 0 1 N N N 14.672 22.879 6.088  0.558  0.350  0.225  OAL 48O 11 
48O C6  CAK C 0 1 N N R 16.852 22.499 5.174  2.185  1.984  -0.322 CAK 48O 12 
48O O4  OAN O 0 1 N N N 16.858 23.041 3.830  3.006  2.904  0.400  OAN 48O 13 
48O C7  CAJ C 0 1 N N S 16.069 21.240 5.222  0.778  2.579  -0.553 CAJ 48O 14 
48O O5  OAO O 0 1 N N N 16.344 20.411 4.083  0.687  3.885  0.019  OAO 48O 15 
48O C8  CAM C 0 1 N N R 14.653 21.793 5.161  -0.168 1.597  0.179  CAM 48O 16 
48O C9  CAP C 0 1 N N N 13.560 20.784 5.535  -1.470 1.427  -0.606 CAP 48O 17 
48O N4  NAQ N 0 1 N N N 13.852 20.176 6.834  -2.398 0.591  0.160  NAQ 48O 18 
48O C10 CAR C 0 1 N N N 14.503 19.007 6.983  -3.616 0.305  -0.339 CAR 48O 19 
48O O6  OAU O 0 1 N N N 14.921 18.377 6.008  -3.945 0.739  -1.423 OAU 48O 20 
48O C11 CAS C 0 1 N N S 14.788 18.477 8.437  -4.570 -0.556 0.449  CAS 48O 21 
48O C12 CAT C 0 1 N N N 15.503 17.145 8.630  -3.938 -1.928 0.691  CAT 48O 22 
48O N5  NAW N 1 1 N N N 13.891 19.991 9.646  -6.686 -1.260 0.160  NAW 48O 23 
48O H1  H1  H 0 1 N N N 19.079 24.595 9.187  5.215  -2.161 1.316  H1  48O 24 
48O H2  H2  H 0 1 N N N 15.909 22.259 10.665 3.572  -2.267 -2.515 H2  48O 25 
48O H3  H3  H 0 1 N N N 14.977 22.205 8.370  2.056  -0.473 -1.855 H3  48O 26 
48O H4  H4  H 0 1 N N N 16.035 24.417 5.713  2.038  0.934  1.581  H4  48O 27 
48O H5  H5  H 0 1 N N N 17.869 22.359 5.569  2.650  1.722  -1.273 H5  48O 28 
48O H6  H6  H 0 1 N N N 17.362 23.846 3.815  3.152  3.743  -0.057 H6  48O 29 
48O H7  H7  H 0 1 N N N 16.235 20.705 6.169  0.547  2.611  -1.617 H7  48O 30 
48O H8  H8  H 0 1 N N N 17.231 20.077 4.141  1.303  4.525  -0.364 H8  48O 31 
48O H9  H9  H 0 1 N N N 14.459 22.165 4.144  -0.378 1.953  1.188  H9  48O 32 
48O H10 H10 H 0 1 N N N 12.591 21.302 5.586  -1.921 2.405  -0.779 H10 48O 33 
48O H11 H11 H 0 1 N N N 13.515 19.997 4.768  -1.258 0.951  -1.564 H11 48O 34 
48O H12 H12 H 0 1 N N N 13.551 20.656 7.658  -2.134 0.243  1.026  H12 48O 35 
48O H14 H14 H 0 1 N N N 15.748 19.013 8.459  -4.783 -0.080 1.406  H14 48O 36 
48O H15 H15 H 0 1 N N N 15.613 16.940 9.705  -3.010 -1.807 1.251  H15 48O 37 
48O H16 H16 H 0 1 N N N 14.915 16.342 8.162  -4.628 -2.550 1.261  H16 48O 38 
48O H17 H17 H 0 1 N N N 16.497 17.191 8.162  -3.725 -2.404 -0.266 H17 48O 39 
48O NAX NAX N 0 1 N N N 13.349 20.960 9.695  -7.555 -1.803 0.623  NAX 48O 40 
48O H13 H13 H 0 1 N N N 13.229 21.368 8.790  -7.645 -2.762 0.507  H13 48O 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
48O O4  C6  SING N N 1  
48O O5  C7  SING N N 2  
48O C8  C7  SING N N 3  
48O C8  C9  SING N N 4  
48O C8  O3  SING N N 5  
48O C6  C7  SING N N 6  
48O C6  C5  SING N N 7  
48O C9  N4  SING N N 8  
48O O6  C10 DOUB N N 9  
48O O3  C5  SING N N 10 
48O C5  N3  SING N N 11 
48O O1  C1  DOUB N N 12 
48O N4  C10 SING N N 13 
48O C10 C11 SING N N 14 
48O N3  C1  SING N N 15 
48O N3  C4  SING N N 16 
48O C1  N2  SING N N 17 
48O C11 C12 SING N N 18 
48O C4  C3  DOUB N N 19 
48O N2  C2  SING N N 20 
48O N1  N5  DOUB N N 21 
48O C3  C2  SING N N 22 
48O C2  O2  DOUB N N 23 
48O N2  H1  SING N N 24 
48O C3  H2  SING N N 25 
48O C4  H3  SING N N 26 
48O C5  H4  SING N N 27 
48O C6  H5  SING N N 28 
48O O4  H6  SING N N 29 
48O C7  H7  SING N N 30 
48O O5  H8  SING N N 31 
48O C8  H9  SING N N 32 
48O C9  H10 SING N N 33 
48O C9  H11 SING N N 34 
48O N4  H12 SING N N 35 
48O C11 N1  SING N N 36 
48O C11 H14 SING N N 37 
48O C12 H15 SING N N 38 
48O C12 H16 SING N N 39 
48O C12 H17 SING N N 40 
48O N5  NAX DOUB N N 41 
48O NAX H13 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
48O SMILES           ACDLabs              12.01 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CNC(=O)C(/N=[N+]=[N@H])C"                                                                                                                    
48O InChI            InChI                1.03  "InChI=1S/C12H16N6O6/c1-5(16-17-13)10(22)14-4-6-8(20)9(21)11(24-6)18-3-2-7(19)15-12(18)23/h2-3,5-6,8-9,11,13,20-21H,4H2,1H3,(H-,14,15,19,22,23)/p+1/t5-,6+,8+,9+,11+/m0/s1" 
48O InChIKey         InChI                1.03  BMVPLHCMGOWMGY-DANLAGSESA-O                                                                                                                                                 
48O SMILES_CANONICAL CACTVS               3.385 "C[C@H](N=[N+]=N)C(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O"                                                                                                      
48O SMILES           CACTVS               3.385 "C[CH](N=[N+]=N)C(=O)NC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O"                                                                                                            
48O SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=O)NC2=O)O)O)N=[N+]=N"                                                                                                       
48O SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C(=O)NCC1C(C(C(O1)N2C=CC(=O)NC2=O)O)O)N=[N+]=N"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
48O "SYSTEMATIC NAME" ACDLabs              12.01 "5'-deoxy-5'-{[(2S)-2-(triaza-1,2-dien-2-ium-1-yl)propanoyl]amino}uridine"                                                                                    
48O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "azanylidene-[1-[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-1-oxidanylidene-propan-2-yl]imino-azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
48O "Create component"   2015-02-12 EBI  
48O "Other modification" 2015-02-13 EBI  
48O "Initial release"    2015-09-16 RCSB 
# 
