data_3XO
# 
_chem_comp.id                                    3XO 
_chem_comp.name                                  "2-chloro-4-{[2-(4-methylpiperazin-1-yl)-3,4-dioxocyclobut-1-en-1-yl]amino}phenyl alpha-D-mannopyranoside" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H26 Cl N3 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-06 
_chem_comp.pdbx_modified_date                    2015-05-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        483.899 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3XO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4X5R 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3XO O3  O1  O  0 1 N N N 11.708 14.057 -14.979 3.694  0.249  1.394  O3  3XO 1  
3XO C4  C1  C  0 1 Y N N 9.717  18.414 -16.147 -0.160 -0.481 -1.929 C4  3XO 2  
3XO C5  C2  C  0 1 Y N N 9.398  17.192 -15.573 1.214  -0.342 -1.936 C5  3XO 3  
3XO O4  O2  O  0 1 N N N 11.163 13.926 -11.350 6.441  -2.103 0.801  O4  3XO 4  
3XO C6  C3  C  0 1 N N N 10.453 20.856 -17.739 -3.078 0.845  -0.294 C6  3XO 5  
3XO N1  N1  N  0 1 N N N 11.714 22.545 -19.251 -5.535 0.174  -0.228 N1  3XO 6  
3XO C7  C4  C  0 1 N N N 10.790 22.087 -18.377 -4.447 0.984  -0.024 C7  3XO 7  
3XO C8  C5  C  0 1 N N N 9.695  22.807 -17.673 -4.280 2.324  0.558  C8  3XO 8  
3XO N2  N2  N  0 1 N N N 14.155 23.807 -19.997 -7.466 -1.770 0.280  N2  3XO 9  
3XO C9  C6  C  0 1 N N N 9.322  21.482 -16.994 -2.832 2.179  0.274  C9  3XO 10 
3XO O5  O3  O  0 1 N N N 9.267  12.052 -12.264 7.403  0.281  -0.453 O5  3XO 11 
3XO C10 C7  C  0 1 N N N 12.840 21.749 -19.808 -6.884 0.606  0.171  C10 3XO 12 
3XO O6  O4  O  0 1 N N N 10.530 11.420 -14.746 5.854  2.071  1.041  O6  3XO 13 
3XO C11 C8  C  0 1 N N N 14.156 22.432 -19.513 -7.518 -0.502 1.019  C11 3XO 14 
3XO C12 C9  C  0 1 N N N 13.043 24.541 -19.393 -6.076 -2.189 0.029  C12 3XO 15 
3XO C13 C10 C  0 1 N N N 11.718 23.914 -19.768 -5.386 -1.147 -0.857 C13 3XO 16 
3XO O7  O5  O  0 1 N N N 14.033 13.638 -13.471 2.733  -2.119 2.709  O7  3XO 17 
3XO C14 C11 C  0 1 N N N 15.469 24.487 -19.675 -8.215 -2.820 0.983  C14 3XO 18 
3XO C15 C12 C  0 1 N N R 10.413 13.730 -15.439 3.799  1.082  0.238  C15 3XO 19 
3XO O2  O6  O  0 1 N N N 8.491  21.183 -16.218 -1.848 2.875  0.441  O2  3XO 20 
3XO O1  O7  O  0 1 N N N 9.321  23.924 -17.650 -5.003 3.169  1.050  O1  3XO 21 
3XO N   N3  N  0 1 N N N 11.035 19.607 -17.825 -2.293 -0.133 -0.852 N   3XO 22 
3XO C3  C13 C  0 1 Y N N 10.668 18.441 -17.161 -0.901 0.008  -0.860 C3  3XO 23 
3XO C2  C14 C  0 1 Y N N 11.282 17.249 -17.596 -0.260 0.637  0.199  C2  3XO 24 
3XO C1  C15 C  0 1 Y N N 10.920 16.029 -16.991 1.114  0.776  0.190  C1  3XO 25 
3XO CL  CL1 CL 0 0 N N N 8.225  17.158 -14.329 2.141  -0.948 -3.273 CL  3XO 26 
3XO C   C16 C  0 1 Y N N 9.971  16.019 -15.971 1.855  0.283  -0.874 C   3XO 27 
3XO O   O8  O  0 1 N N N 9.564  14.851 -15.361 3.207  0.419  -0.882 O   3XO 28 
3XO C19 C17 C  0 1 N N S 9.790  12.638 -14.578 5.275  1.362  -0.056 C19 3XO 29 
3XO C18 C18 C  0 1 N N S 9.776  13.075 -13.115 6.010  0.032  -0.250 C18 3XO 30 
3XO C17 C19 C  0 1 N N S 11.184 13.436 -12.684 5.820  -0.832 1.000  C17 3XO 31 
3XO C16 C20 C  0 1 N N R 11.766 14.499 -13.608 4.323  -1.027 1.253  C16 3XO 32 
3XO C20 C21 C  0 1 N N N 13.216 14.791 -13.291 4.124  -1.839 2.535  C20 3XO 33 
3XO H6  H1  H  0 1 N N N 9.238  19.323 -15.814 -0.659 -0.967 -2.755 H6  3XO 34 
3XO H20 H2  H  0 1 N N N 10.800 13.263 -10.774 7.391  -2.055 0.630  H20 3XO 35 
3XO H21 H4  H  0 1 N N N 9.272  12.356 -11.364 7.596  0.829  -1.225 H21 3XO 36 
3XO H8  H5  H  0 1 N N N 12.715 21.655 -20.897 -6.816 1.522  0.758  H8  3XO 37 
3XO H9  H6  H  0 1 N N N 12.839 20.748 -19.351 -7.490 0.780  -0.717 H9  3XO 38 
3XO H22 H7  H  0 1 N N N 10.143 10.738 -14.210 5.434  2.922  1.225  H22 3XO 39 
3XO H11 H8  H  0 1 N N N 14.967 21.878 -20.008 -8.556 -0.248 1.232  H11 3XO 40 
3XO H10 H9  H  0 1 N N N 14.324 22.434 -18.426 -6.969 -0.603 1.955  H10 3XO 41 
3XO H12 H10 H  0 1 N N N 13.153 24.525 -18.299 -5.544 -2.270 0.977  H12 3XO 42 
3XO H13 H11 H  0 1 N N N 13.063 25.582 -19.748 -6.073 -3.157 -0.473 H13 3XO 43 
3XO H15 H12 H  0 1 N N N 10.892 24.486 -19.320 -5.852 -1.137 -1.842 H15 3XO 44 
3XO H14 H13 H  0 1 N N N 11.605 23.902 -20.862 -4.327 -1.391 -0.952 H14 3XO 45 
3XO H25 H14 H  0 1 N N N 14.935 13.853 -13.265 2.533  -2.632 3.504  H25 3XO 46 
3XO H18 H15 H  0 1 N N N 15.448 25.522 -20.048 -9.257 -2.517 1.083  H18 3XO 47 
3XO H17 H16 H  0 1 N N N 15.621 24.493 -18.586 -8.160 -3.749 0.414  H17 3XO 48 
3XO H16 H17 H  0 1 N N N 16.293 23.940 -20.157 -7.785 -2.974 1.972  H16 3XO 49 
3XO H   H18 H  0 1 N N N 10.464 13.368 -16.477 3.279  2.023  0.420  H   3XO 50 
3XO H7  H19 H  0 1 N N N 11.818 19.531 -18.442 -2.703 -0.921 -1.240 H7  3XO 51 
3XO H5  H20 H  0 1 N N N 12.021 17.271 -18.383 -0.836 1.018  1.029  H5  3XO 52 
3XO H4  H21 H  0 1 N N N 11.376 15.106 -17.317 1.612  1.266  1.013  H4  3XO 53 
3XO H3  H22 H  0 1 N N N 8.751  12.487 -14.905 5.359  1.962  -0.962 H3  3XO 54 
3XO H2  H23 H  0 1 N N N 9.146  13.973 -13.030 5.601  -0.487 -1.118 H2  3XO 55 
3XO H1  H24 H  0 1 N N N 11.813 12.536 -12.744 6.274  -0.335 1.858  H1  3XO 56 
3XO H19 H25 H  0 1 N N N 11.184 15.425 -13.490 3.878  -1.560 0.412  H19 3XO 57 
3XO H23 H26 H  0 1 N N N 13.574 15.590 -13.957 4.489  -1.267 3.388  H23 3XO 58 
3XO H24 H27 H  0 1 N N N 13.293 15.124 -12.245 4.677  -2.775 2.461  H24 3XO 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3XO N2  C14 SING N N 1  
3XO N2  C11 SING N N 2  
3XO N2  C12 SING N N 3  
3XO C10 C11 SING N N 4  
3XO C10 N1  SING N N 5  
3XO C13 C12 SING N N 6  
3XO C13 N1  SING N N 7  
3XO N1  C7  SING N N 8  
3XO C7  C6  DOUB N N 9  
3XO C7  C8  SING N N 10 
3XO N   C6  SING N N 11 
3XO N   C3  SING N N 12 
3XO C6  C9  SING N N 13 
3XO C8  O1  DOUB N N 14 
3XO C8  C9  SING N N 15 
3XO C2  C3  DOUB Y N 16 
3XO C2  C1  SING Y N 17 
3XO C3  C4  SING Y N 18 
3XO C9  O2  DOUB N N 19 
3XO C1  C   DOUB Y N 20 
3XO C4  C5  DOUB Y N 21 
3XO C   C5  SING Y N 22 
3XO C   O   SING N N 23 
3XO C5  CL  SING N N 24 
3XO C15 O   SING N N 25 
3XO C15 O3  SING N N 26 
3XO C15 C19 SING N N 27 
3XO O3  C16 SING N N 28 
3XO O6  C19 SING N N 29 
3XO C19 C18 SING N N 30 
3XO C16 C20 SING N N 31 
3XO C16 C17 SING N N 32 
3XO O7  C20 SING N N 33 
3XO C18 C17 SING N N 34 
3XO C18 O5  SING N N 35 
3XO C17 O4  SING N N 36 
3XO C4  H6  SING N N 37 
3XO O4  H20 SING N N 38 
3XO O5  H21 SING N N 39 
3XO C10 H8  SING N N 40 
3XO C10 H9  SING N N 41 
3XO O6  H22 SING N N 42 
3XO C11 H11 SING N N 43 
3XO C11 H10 SING N N 44 
3XO C12 H12 SING N N 45 
3XO C12 H13 SING N N 46 
3XO C13 H15 SING N N 47 
3XO C13 H14 SING N N 48 
3XO O7  H25 SING N N 49 
3XO C14 H18 SING N N 50 
3XO C14 H17 SING N N 51 
3XO C14 H16 SING N N 52 
3XO C15 H   SING N N 53 
3XO N   H7  SING N N 54 
3XO C2  H5  SING N N 55 
3XO C1  H4  SING N N 56 
3XO C19 H3  SING N N 57 
3XO C18 H2  SING N N 58 
3XO C17 H1  SING N N 59 
3XO C16 H19 SING N N 60 
3XO C20 H23 SING N N 61 
3XO C20 H24 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3XO SMILES           ACDLabs              12.01 "O=C2C(N1CCN(C)CC1)=C(C2=O)Nc4ccc(OC3OC(C(O)C(O)C3O)CO)c(Cl)c4"                                                                                                                                          
3XO InChI            InChI                1.03  "InChI=1S/C21H26ClN3O8/c1-24-4-6-25(7-5-24)15-14(17(28)18(15)29)23-10-2-3-12(11(22)8-10)32-21-20(31)19(30)16(27)13(9-26)33-21/h2-3,8,13,16,19-21,23,26-27,30-31H,4-7,9H2,1H3/t13-,16-,19+,20+,21+/m1/s1" 
3XO InChIKey         InChI                1.03  OVFSRWMGARZIAS-YVNBQAQUSA-N                                                                                                                                                                              
3XO SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)C2=C(Nc3ccc(O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)c(Cl)c3)C(=O)C2=O"                                                                                                                    
3XO SMILES           CACTVS               3.385 "CN1CCN(CC1)C2=C(Nc3ccc(O[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)c(Cl)c3)C(=O)C2=O"                                                                                                                           
3XO SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)C2=C(C(=O)C2=O)Nc3ccc(c(c3)Cl)O[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O"                                                                                                                  
3XO SMILES           "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)C2=C(C(=O)C2=O)Nc3ccc(c(c3)Cl)OC4C(C(C(C(O4)CO)O)O)O"                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3XO "SYSTEMATIC NAME" ACDLabs              12.01 "2-chloro-4-{[2-(4-methylpiperazin-1-yl)-3,4-dioxocyclobut-1-en-1-yl]amino}phenyl alpha-D-mannopyranoside"                                                 
3XO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "3-[[3-chloranyl-4-[(2R,3S,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-phenyl]amino]-4-(4-methylpiperazin-1-yl)cyclobut-3-ene-1,2-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3XO "Create component" 2014-12-06 EBI  
3XO "Initial release"  2015-05-20 RCSB 
# 
