data_3GO
#

_chem_comp.id                                   3GO
_chem_comp.name                                 
;4-[[(2R,3S,4R,5R)-5-[6-amino-8-(quinolin-6-ylmethylamino)purin-9-yl]-3,4-dihydroxy-oxolan-2-yl]methoxymethyl]benzonitri
le
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H26 N8 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5'-O-(4-cyanobenzyl)-8-[(quinolin-6-ylmethyl)amino]adenosine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-01-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       538.557
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3GO
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3FZM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3GO  C28   C28   C  0  1  Y  N  N  20.632  -3.107   3.835  -4.636  -1.730   1.244  C28   3GO   1  
3GO  C35   C35   C  0  1  Y  N  N  21.444  -3.851   4.687  -5.399  -2.817   0.787  C35   3GO   2  
3GO  C40   C40   C  0  1  Y  N  N  20.879  -4.659   5.667  -5.241  -4.104   1.334  C40   3GO   3  
3GO  C39   C39   C  0  1  Y  N  N  21.708  -5.394   6.499  -6.017  -5.114   0.841  C39   3GO   4  
3GO  C38   C38   C  0  1  Y  N  N  23.094  -5.302   6.342  -6.934  -4.853  -0.175  C38   3GO   5  
3GO  N37   N37   N  0  1  Y  N  N  23.624  -4.515   5.388  -7.078  -3.653  -0.683  N37   3GO   6  
3GO  C36   C36   C  0  1  Y  N  N  22.829  -3.792   4.558  -6.350  -2.621  -0.245  C36   3GO   7  
3GO  C27   C27   C  0  1  Y  N  N  23.399  -2.985   3.579  -6.509  -1.336  -0.792  C27   3GO   8  
3GO  C26   C26   C  0  1  Y  N  N  22.581  -2.238   2.724  -5.752  -0.305  -0.326  C26   3GO   9  
3GO  C25   C25   C  0  1  Y  N  N  21.201  -2.304   2.850  -4.819  -0.500   0.689  C25   3GO  10  
3GO  C24   C24   C  0  1  N  N  N  20.304  -1.480   1.912  -4.000   0.666   1.180  C24   3GO  11  
3GO  N23   N23   N  0  1  N  N  N  18.940  -2.078   1.855  -2.767   0.762   0.394  N23   3GO  12  
3GO  C6    C6    C  0  1  Y  N  N  18.609  -2.906   0.855  -1.852   1.760   0.663  C6    3GO  13  
3GO  N7    N7    N  0  1  Y  N  N  19.427  -3.313  -0.128  -1.984   2.671   1.595  N7    3GO  14  
3GO  C8    C8    C  0  1  Y  N  N  18.740  -4.120  -0.927  -0.902   3.490   1.581  C8    3GO  15  
3GO  C4    C4    C  0  1  Y  N  N  19.084  -4.821  -2.065  -0.504   4.609   2.329  C4    3GO  16  
3GO  N10   N10   N  0  1  N  N  N  20.326  -4.745  -2.560  -1.304   5.101   3.348  N10   3GO  17  
3GO  N1    N1    N  0  1  Y  N  N  18.132  -5.593  -2.690   0.657   5.187   2.037  N1    3GO  18  
3GO  C2    C2    C  0  1  Y  N  N  16.848  -5.656  -2.165   1.425   4.725   1.068  C2    3GO  19  
3GO  N3    N3    N  0  1  Y  N  N  16.535  -4.975  -1.061   1.092   3.678   0.341  N3    3GO  20  
3GO  C9    C9    C  0  1  Y  N  N  17.459  -4.214  -0.431  -0.050   3.037   0.561  C9    3GO  21  
3GO  N5    N5    N  0  1  Y  N  N  17.397  -3.477   0.661  -0.669   1.943   0.002  N5    3GO  22  
3GO  C11   C11   C  0  1  N  N  R  16.198  -3.295   1.504  -0.158   1.126  -1.101  C11   3GO  23  
3GO  O12   O12   O  0  1  N  N  N  15.935  -1.897   1.644   1.248   0.852  -0.914  O12   3GO  24  
3GO  C31   C31   C  0  1  N  N  R  16.486  -3.750   2.910  -0.234   1.908  -2.431  C31   3GO  25  
3GO  O34   O34   O  0  1  N  N  N  16.328  -5.181   3.012  -1.397   1.530  -3.169  O34   3GO  26  
3GO  C32   C32   C  0  1  N  N  S  15.417  -3.053   3.711   1.047   1.490  -3.187  C32   3GO  27  
3GO  O33   O33   O  0  1  N  N  N  14.241  -3.855   3.747   0.714   0.840  -4.415  O33   3GO  28  
3GO  C13   C13   C  0  1  N  N  R  15.135  -1.764   2.905   1.746   0.504  -2.224  C13   3GO  29  
3GO  C14   C14   C  0  1  N  N  N  15.662  -0.580   3.670   3.264   0.687  -2.284  C14   3GO  30  
3GO  O15   O15   O  0  1  N  N  N  17.094  -0.627   3.644   3.892  -0.262  -1.419  O15   3GO  31  
3GO  C16   C16   C  0  1  N  N  N  17.600   0.295   4.494   5.318  -0.176  -1.401  C16   3GO  32  
3GO  C17   C17   C  0  1  Y  N  N  18.901   0.015   5.234   5.872  -1.217  -0.462  C17   3GO  33  
3GO  C18   C18   C  0  1  Y  N  N  20.011   0.822   5.017   6.184  -2.478  -0.939  C18   3GO  34  
3GO  C19   C19   C  0  1  Y  N  N  21.195   0.565   5.689   6.691  -3.435  -0.085  C19   3GO  35  
3GO  C20   C20   C  0  1  Y  N  N  21.267  -0.499   6.594   6.890  -3.129   1.263  C20   3GO  36  
3GO  C29   C29   C  0  1  N  N  N  22.487  -0.762   7.300   7.416  -4.118   2.155  C29   3GO  37  
3GO  N30   N30   N  0  1  N  N  N  23.451  -0.973   7.866   7.834  -4.903   2.862  N30   3GO  38  
3GO  C21   C21   C  0  1  Y  N  N  20.154  -1.301   6.813   6.573  -1.855   1.737  C21   3GO  39  
3GO  C22   C22   C  0  1  Y  N  N  18.972  -1.045   6.129   6.071  -0.906   0.872  C22   3GO  40  
3GO  H28   H28   H  0  1  N  N  N  19.558  -3.153   3.938  -3.912  -1.868   2.033  H28   3GO  41  
3GO  H40   H40   H  0  1  N  N  N  19.806  -4.713   5.779  -4.525  -4.289   2.122  H40   3GO  42  
3GO  H39   H39   H  0  1  N  N  N  21.287  -6.032   7.262  -5.921  -6.113   1.239  H39   3GO  43  
3GO  H38   H38   H  0  1  N  N  N  23.745  -5.868   6.992  -7.542  -5.661  -0.555  H38   3GO  44  
3GO  H27   H27   H  0  1  N  N  N  24.473  -2.935   3.479  -7.228  -1.168  -1.580  H27   3GO  45  
3GO  H26   H26   H  0  1  N  N  N  23.024  -1.610   1.966  -5.878   0.680  -0.751  H26   3GO  46  
3GO  H24   H24   H  0  1  N  N  N  20.233  -0.449   2.289  -4.574   1.586   1.068  H24   3GO  47  
3GO  H24A  H24A  H  0  0  N  N  N  20.741  -1.480   0.902  -3.750   0.518   2.230  H24A  3GO  48  
3GO  HN23  HN23  H  0  0  N  N  N  18.834  -2.606   2.698  -2.593   0.123  -0.315  HN23  3GO  49  
3GO  HN10  HN10  H  0  0  N  N  N  20.287  -4.726  -3.559  -2.149   4.671   3.552  HN10  3GO  50  
3GO  HN1A  HN1A  H  0  0  N  N  N  20.766  -3.911  -2.228  -1.019   5.875   3.858  HN1A  3GO  51  
3GO  H2    H2    H  0  1  N  N  N  16.098  -6.260  -2.653   2.361   5.223   0.864  H2    3GO  52  
3GO  H11   H11   H  0  1  N  N  N  15.372  -3.852   1.039  -0.719   0.194  -1.175  H11   3GO  53  
3GO  H31   H31   H  0  1  N  N  N  17.508  -3.521   3.245  -0.235   2.982  -2.243  H31   3GO  54  
3GO  HO34  HO34  H  0  0  N  N  N  16.293  -5.559   2.141  -1.495   1.991  -4.014  HO34  3GO  55  
3GO  H32   H32   H  0  1  N  N  N  15.719  -2.859   4.751   1.681   2.357  -3.374  H32   3GO  56  
3GO  HO33  HO33  H  0  0  N  N  N  14.006  -4.034   4.650   0.221   1.396  -5.033  HO33  3GO  57  
3GO  H13   H13   H  0  1  N  N  N  14.060  -1.627   2.715   1.477  -0.523  -2.472  H13   3GO  58  
3GO  H14   H14   H  0  1  N  N  N  15.310   0.352   3.204   3.609   0.532  -3.306  H14   3GO  59  
3GO  H14A  H14A  H  0  0  N  N  N  15.302  -0.611   4.709   3.521   1.696  -1.963  H14A  3GO  60  
3GO  H16   H16   H  0  1  N  N  N  17.779   1.198   3.893   5.706  -0.349  -2.405  H16   3GO  61  
3GO  H16A  H16A  H  0  0  N  N  N  16.850   0.347   5.297   5.618   0.815  -1.061  H16A  3GO  62  
3GO  H18   H18   H  0  1  N  N  N  19.951   1.649   4.325   6.030  -2.713  -1.981  H18   3GO  63  
3GO  H19   H19   H  0  1  N  N  N  22.061   1.186   5.514   6.934  -4.419  -0.458  H19   3GO  64  
3GO  H21   H21   H  0  1  N  N  N  20.207  -2.121   7.513   6.724  -1.612   2.779  H21   3GO  65  
3GO  H22   H22   H  0  1  N  N  N  18.107  -1.671   6.293   5.829   0.082   1.236  H22   3GO  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3GO  C28  C35   DOUB  Y  N   1  
3GO  C28  C25   SING  Y  N   2  
3GO  C35  C40   SING  Y  N   3  
3GO  C35  C36   SING  Y  N   4  
3GO  C40  C39   DOUB  Y  N   5  
3GO  C39  C38   SING  Y  N   6  
3GO  C38  N37   DOUB  Y  N   7  
3GO  N37  C36   SING  Y  N   8  
3GO  C36  C27   DOUB  Y  N   9  
3GO  C27  C26   SING  Y  N  10  
3GO  C26  C25   DOUB  Y  N  11  
3GO  C25  C24   SING  N  N  12  
3GO  C24  N23   SING  N  N  13  
3GO  N23  C6    SING  N  N  14  
3GO  C6   N7    DOUB  Y  N  15  
3GO  C6   N5    SING  Y  N  16  
3GO  N7   C8    SING  Y  N  17  
3GO  C8   C4    DOUB  Y  N  18  
3GO  C8   C9    SING  Y  N  19  
3GO  C4   N10   SING  N  N  20  
3GO  C4   N1    SING  Y  N  21  
3GO  N1   C2    DOUB  Y  N  22  
3GO  C2   N3    SING  Y  N  23  
3GO  N3   C9    DOUB  Y  N  24  
3GO  C9   N5    SING  Y  N  25  
3GO  N5   C11   SING  N  N  26  
3GO  C11  O12   SING  N  N  27  
3GO  C11  C31   SING  N  N  28  
3GO  O12  C13   SING  N  N  29  
3GO  C31  O34   SING  N  N  30  
3GO  C31  C32   SING  N  N  31  
3GO  C32  O33   SING  N  N  32  
3GO  C32  C13   SING  N  N  33  
3GO  C13  C14   SING  N  N  34  
3GO  C14  O15   SING  N  N  35  
3GO  O15  C16   SING  N  N  36  
3GO  C16  C17   SING  N  N  37  
3GO  C17  C18   DOUB  Y  N  38  
3GO  C17  C22   SING  Y  N  39  
3GO  C18  C19   SING  Y  N  40  
3GO  C19  C20   DOUB  Y  N  41  
3GO  C20  C29   SING  N  N  42  
3GO  C20  C21   SING  Y  N  43  
3GO  C29  N30   TRIP  N  N  44  
3GO  C21  C22   DOUB  Y  N  45  
3GO  C28  H28   SING  N  N  46  
3GO  C40  H40   SING  N  N  47  
3GO  C39  H39   SING  N  N  48  
3GO  C38  H38   SING  N  N  49  
3GO  C27  H27   SING  N  N  50  
3GO  C26  H26   SING  N  N  51  
3GO  C24  H24   SING  N  N  52  
3GO  C24  H24A  SING  N  N  53  
3GO  N23  HN23  SING  N  N  54  
3GO  N10  HN10  SING  N  N  55  
3GO  N10  HN1A  SING  N  N  56  
3GO  C2   H2    SING  N  N  57  
3GO  C11  H11   SING  N  N  58  
3GO  C31  H31   SING  N  N  59  
3GO  O34  HO34  SING  N  N  60  
3GO  C32  H32   SING  N  N  61  
3GO  O33  HO33  SING  N  N  62  
3GO  C13  H13   SING  N  N  63  
3GO  C14  H14   SING  N  N  64  
3GO  C14  H14A  SING  N  N  65  
3GO  C16  H16   SING  N  N  66  
3GO  C16  H16A  SING  N  N  67  
3GO  C18  H18   SING  N  N  68  
3GO  C19  H19   SING  N  N  69  
3GO  C21  H21   SING  N  N  70  
3GO  C22  H22   SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3GO  SMILES            ACDLabs               10.04  "N#Cc1ccc(cc1)COCC6OC(n3c(nc2c(ncnc23)N)NCc5cc4cccnc4cc5)C(O)C6O"  
3GO  SMILES_CANONICAL  CACTVS                3.341  "Nc1ncnc2n([C@@H]3O[C@H](COCc4ccc(cc4)C#N)[C@@H](O)[C@H]3O)c(NCc5ccc6ncccc6c5)nc12"  
3GO  SMILES            CACTVS                3.341  "Nc1ncnc2n([CH]3O[CH](COCc4ccc(cc4)C#N)[CH](O)[CH]3O)c(NCc5ccc6ncccc6c5)nc12"  
3GO  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc2cc(ccc2nc1)CNc3nc4c(ncnc4n3[C@H]5[C@@H]([C@@H]([C@H](O5)COCc6ccc(cc6)C#N)O)O)N"  
3GO  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc2cc(ccc2nc1)CNc3nc4c(ncnc4n3C5C(C(C(O5)COCc6ccc(cc6)C#N)O)O)N"  
3GO  InChI             InChI                 1.03   "InChI=1S/C28H26N8O4/c29-11-16-3-5-17(6-4-16)13-39-14-21-23(37)24(38)27(40-21)36-26-22(25(30)33-15-34-26)35-28(36)32-12-18-7-8-20-19(10-18)2-1-9-31-20/h1-10,15,21,23-24,27,37-38H,12-14H2,(H,32,35)(H2,30,33,34)/t21-,23-,24-,27-/m1/s1"  
3GO  InChIKey          InChI                 1.03   DKJUQSPQYGQPBH-VBHAUSMQSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3GO  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-O-(4-cyanobenzyl)-8-[(quinolin-6-ylmethyl)amino]adenosine"  
3GO  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "4-[[(2R,3S,4R,5R)-5-[6-amino-8-(quinolin-6-ylmethylamino)purin-9-yl]-3,4-dihydroxy-oxolan-2-yl]methoxymethyl]benzonitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3GO  "Create component"      2009-01-28  PDBJ  
3GO  "Modify aromatic_flag"  2011-06-04  RCSB  
3GO  "Modify descriptor"     2011-06-04  RCSB  
3GO  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3GO
_pdbx_chem_comp_synonyms.name        "5'-O-(4-cyanobenzyl)-8-[(quinolin-6-ylmethyl)amino]adenosine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
