data_24O
# 
_chem_comp.id                                    24O 
_chem_comp.name                                  "(1R,2R)-2-[(1S,2S)-2-amino-1-hydroxy-4-methylpentyl]-4-oxocyclopentanecarboxylic acid" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H21 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-02-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        243.299 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     24O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1YM2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
24O N    N    N 0 1 N N N Y Y N 29.739 5.798  15.780 -2.712 -0.914 1.847  N    24O 1  
24O CA   C41  C 0 1 N N S Y N N 30.837 6.123  14.872 -1.812 -0.538 0.749  C41  24O 2  
24O C43  C43  C 0 1 N N S Y N N 31.501 4.884  14.264 -0.400 -0.326 1.296  C43  24O 3  
24O O45  O45  O 0 1 N N N N N N 32.067 4.032  15.303 0.023  -1.501 1.991  O45  24O 4  
24O C47  C47  C 0 1 N N R Y N N 30.520 4.081  13.383 0.560  -0.046 0.138  C47  24O 5  
24O C49  C49  C 0 1 N N R Y N N 31.384 3.200  12.447 1.995  0.129  0.668  C49  24O 6  
24O C51  C51  C 0 1 N N N N N N 30.587 1.889  12.259 2.833  -0.983 0.004  C51  24O 7  
24O C54  C54  C 0 1 N N N N N N 29.521 1.949  13.330 2.061  -1.332 -1.264 C54  24O 8  
24O C55  C55  C 0 1 N N N N N N 29.583 3.162  14.203 0.604  -1.255 -0.820 C55  24O 9  
24O O58  O58  O 0 1 N N N N N N 28.674 1.078  13.467 2.498  -1.603 -2.357 O58  24O 10 
24O C    C59  C 0 1 N N N Y N Y 31.458 3.883  11.078 2.530  1.484  0.281  C59  24O 11 
24O O    O60  O 0 1 N N N Y N Y 30.538 4.603  10.735 1.842  2.245  -0.357 O60  24O 12 
24O C92  C92  C 0 1 N N N N N N 31.886 6.952  15.639 -2.309 0.758  0.104  C92  24O 13 
24O C95  C95  C 0 1 N N N N N N 31.272 8.325  16.021 -3.697 0.529  -0.496 C95  24O 14 
24O C97  C97  C 0 1 N N N N N N 32.265 9.092  16.913 -4.238 1.850  -1.048 C97  24O 15 
24O C98  C98  C 0 1 N N N N N N 31.039 9.147  14.731 -3.601 -0.495 -1.629 C98  24O 16 
24O H    H39  H 0 1 N N N Y Y N 29.346 6.642  16.144 -2.463 -1.816 2.226  H39  24O 17 
24O HA   H41  H 0 1 N N N Y N N 30.416 6.696  14.033 -1.798 -1.332 0.003  H41  24O 18 
24O H43  H43  H 0 1 N N N Y N N 32.317 5.238  13.618 -0.399 0.521  1.982  H43  24O 19 
24O H45  H45  H 0 1 N N N N N N 32.473 3.272  14.903 0.046  -2.296 1.441  H45  24O 20 
24O H47  H47  H 0 1 N N N Y N N 29.875 4.786  12.838 0.247  0.849  -0.400 H47  24O 21 
24O H49  H49  H 0 1 N N N Y N N 32.394 3.036  12.852 2.011  0.015  1.752  H49  24O 22 
24O H511 H511 H 0 0 N N N N N N 30.142 1.833  11.255 3.828  -0.613 -0.245 H511 24O 23 
24O H512 H512 H 0 0 N N N N N N 31.232 1.007  12.386 2.901  -1.852 0.659  H512 24O 24 
24O H551 H551 H 0 0 N N N N N N 29.988 2.937  15.201 0.317  -2.167 -0.296 H551 24O 25 
24O H552 H552 H 0 0 N N N N N N 28.592 3.612  14.362 -0.047 -1.086 -1.677 H552 24O 26 
24O H921 H921 H 0 0 N N N N N N 32.184 6.415  16.552 -2.364 1.541  0.859  H921 24O 27 
24O H922 H922 H 0 0 N N N N N N 32.769 7.108  15.002 -1.618 1.060  -0.683 H922 24O 28 
24O H95  H95  H 0 1 N N N N N N 30.323 8.171  16.555 -4.370 0.155  0.275  H95  24O 29 
24O H971 H971 H 0 0 N N N N N N 31.835 10.067 17.187 -3.612 2.181  -1.877 H971 24O 30 
24O H972 H972 H 0 0 N N N N N N 32.464 8.510  17.825 -5.260 1.705  -1.400 H972 24O 31 
24O H973 H973 H 0 0 N N N N N N 33.206 9.248  16.364 -4.228 2.604  -0.262 H973 24O 32 
24O H981 H981 H 0 0 N N N N N N 30.604 10.123 14.991 -3.216 -1.436 -1.236 H981 24O 33 
24O H982 H982 H 0 0 N N N N N N 31.999 9.300  14.215 -4.590 -0.658 -2.057 H982 24O 34 
24O H983 H983 H 0 0 N N N N N N 30.349 8.603  14.069 -2.928 -0.122 -2.401 H983 24O 35 
24O H2   H2   H 0 1 N Y N Y Y N 29.035 5.290  15.283 -2.718 -0.208 2.568  H2   24O 36 
24O OXT  OXT  O 0 1 N Y N Y N Y ?      ?      ?      3.771  1.844  0.644  OXT  24O 37 
24O HXT  HXT  H 0 1 N Y N Y N Y ?      ?      ?      4.070  2.723  0.373  HXT  24O 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
24O N   CA   SING N N 1  
24O N   H    SING N N 2  
24O CA  C43  SING N N 3  
24O CA  C92  SING N N 4  
24O CA  HA   SING N N 5  
24O C43 O45  SING N N 6  
24O C43 C47  SING N N 7  
24O C43 H43  SING N N 8  
24O O45 H45  SING N N 9  
24O C47 C49  SING N N 10 
24O C47 C55  SING N N 11 
24O C47 H47  SING N N 12 
24O C49 C51  SING N N 13 
24O C49 C    SING N N 14 
24O C49 H49  SING N N 15 
24O C51 C54  SING N N 16 
24O C51 H511 SING N N 17 
24O C51 H512 SING N N 18 
24O C54 C55  SING N N 19 
24O C54 O58  DOUB N N 20 
24O C55 H551 SING N N 21 
24O C55 H552 SING N N 22 
24O C   O    DOUB N N 23 
24O C92 C95  SING N N 24 
24O C92 H921 SING N N 25 
24O C92 H922 SING N N 26 
24O C95 C97  SING N N 27 
24O C95 C98  SING N N 28 
24O C95 H95  SING N N 29 
24O C97 H971 SING N N 30 
24O C97 H972 SING N N 31 
24O C97 H973 SING N N 32 
24O C98 H981 SING N N 33 
24O C98 H982 SING N N 34 
24O C98 H983 SING N N 35 
24O N   H2   SING N N 36 
24O C   OXT  SING N N 37 
24O OXT HXT  SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
24O SMILES           ACDLabs              12.01 "O=C(O)C1CC(=O)CC1C(O)C(N)CC(C)C"                                                                                           
24O SMILES_CANONICAL CACTVS               3.370 "CC(C)C[C@H](N)[C@@H](O)[C@@H]1CC(=O)C[C@H]1C(O)=O"                                                                         
24O SMILES           CACTVS               3.370 "CC(C)C[CH](N)[CH](O)[CH]1CC(=O)C[CH]1C(O)=O"                                                                               
24O SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)C[C@@H]([C@H]([C@@H]1CC(=O)C[C@H]1C(=O)O)O)N"                                                                         
24O SMILES           "OpenEye OEToolkits" 1.7.0 "CC(C)CC(C(C1CC(=O)CC1C(=O)O)O)N"                                                                                           
24O InChI            InChI                1.03  "InChI=1S/C12H21NO4/c1-6(2)3-10(13)11(15)8-4-7(14)5-9(8)12(16)17/h6,8-11,15H,3-5,13H2,1-2H3,(H,16,17)/t8-,9-,10+,11+/m1/s1" 
24O InChIKey         InChI                1.03  BYQBKCJRZDGCMJ-ZNSHCXBVSA-N                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
24O "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2R)-2-[(1S,2S)-2-amino-1-hydroxy-4-methylpentyl]-4-oxocyclopentanecarboxylic acid"       
24O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(1R,2R)-2-[(1S,2S)-2-azanyl-1-hydroxy-4-methyl-pentyl]-4-oxo-cyclopentane-1-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
24O "Create component"  2011-02-15 RCSB 
24O "Modify descriptor" 2011-06-04 RCSB 
24O "Modify backbone"   2023-11-03 PDBE 
24O "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            24O 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
