data_YTN
#

_chem_comp.id                                   YTN
_chem_comp.name                                 "(3~{R},4~{R})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H24 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-17
_chem_comp.pdbx_modified_date                   2021-12-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       400.422
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YTN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7E38
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YTN  C01  C1   C  0  1  Y  N  N  -18.324  20.943  -24.827   5.848   0.091  -0.570  C01  YTN   1  
YTN  C02  C2   C  0  1  Y  N  N  -19.697  21.668  -24.878   6.341  -0.757   0.419  C02  YTN   2  
YTN  C03  C3   C  0  1  Y  N  N  -19.896  22.700  -23.715   5.484  -1.632   1.067  C03  YTN   3  
YTN  C04  C4   C  0  1  Y  N  N  -18.983  22.934  -22.778   4.143  -1.661   0.733  C04  YTN   4  
YTN  C05  C5   C  0  1  Y  N  N  -17.854  22.324  -22.756   3.653  -0.820  -0.249  C05  YTN   5  
YTN  C06  C6   C  0  1  Y  N  N  -17.442  21.404  -23.622   4.503   0.056  -0.899  C06  YTN   6  
YTN  C07  C7   C  0  1  N  N  N  -19.509  20.242  -26.433   7.923   0.741  -0.063  C07  YTN   7  
YTN  C08  C8   C  0  1  N  N  N  -18.950  21.188  -19.597  -0.911  -0.198   1.166  C08  YTN   8  
YTN  C09  C9   C  0  1  N  N  R  -17.443  21.580  -19.466  -0.081   0.120  -0.080  C09  YTN   9  
YTN  C10  C10  C  0  1  N  N  R  -16.701  21.434  -20.731   1.424   0.136   0.266  C10  YTN  10  
YTN  C11  C11  C  0  1  N  N  N  -16.896  22.682  -21.623   2.191  -0.857  -0.610  C11  YTN  11  
YTN  C12  C12  C  0  1  N  N  N  -16.677  20.749  -18.452  -0.377   1.524  -0.568  C12  YTN  12  
YTN  C13  C13  C  0  1  N  N  N  -15.247  21.339  -20.295   1.841   1.587  -0.060  C13  YTN  13  
YTN  C14  C14  C  0  1  Y  N  N  -19.292  19.792  -20.132  -2.372  -0.248   0.797  C14  YTN  14  
YTN  C15  C15  C  0  1  Y  N  N  -20.031  19.679  -21.300  -3.138   0.901   0.855  C15  YTN  15  
YTN  C16  C16  C  0  1  Y  N  N  -20.378  18.433  -21.801  -4.482   0.859   0.517  C16  YTN  16  
YTN  C17  C17  C  0  1  Y  N  N  -19.993  17.285  -21.126  -5.058  -0.342   0.118  C17  YTN  17  
YTN  C18  C18  C  0  1  Y  N  N  -19.270  17.393  -19.947  -4.285  -1.495   0.061  C18  YTN  18  
YTN  C19  C19  C  0  1  Y  N  N  -18.926  18.642  -19.449  -2.940  -1.443   0.396  C19  YTN  19  
YTN  C20  C20  C  0  1  N  N  N  -17.522  16.189  -18.943  -3.990  -3.816  -0.364  C20  YTN  20  
YTN  C21  C21  C  0  1  N  N  N  -19.589  15.533  -22.685  -6.710  -0.150  -1.583  C21  YTN  21  
YTN  C22  C22  C  0  1  N  N  N  -22.405  18.860  -22.916  -4.576   3.187   0.993  C22  YTN  22  
YTN  O01  O1   O  0  1  N  N  N  -18.334  20.057  -25.951   6.877   0.850  -1.047  O01  YTN  23  
YTN  O02  O2   O  0  1  N  N  N  -20.353  21.122  -26.031   7.681  -0.534   0.556  O02  YTN  24  
YTN  O03  O3   O  0  1  N  N  N  -15.299  20.659  -18.973   0.591   2.338  -0.109  O03  YTN  25  
YTN  O04  O4   O  0  1  N  N  N  -17.088  20.275  -17.450  -1.318   1.854  -1.250  O04  YTN  26  
YTN  O05  O5   O  0  1  N  N  N  -18.884  16.237  -19.259  -4.845  -2.671  -0.329  O05  YTN  27  
YTN  O06  O6   O  0  1  N  N  N  -20.347  16.018  -21.615  -6.377  -0.387  -0.214  O06  YTN  28  
YTN  O07  O7   O  0  1  N  N  N  -21.110  18.337  -22.992  -5.235   1.990   0.575  O07  YTN  29  
YTN  H1   H1   H  0  1  N  N  N  -20.824  23.250  -23.673   5.864  -2.291   1.833  H1   YTN  30  
YTN  H2   H2   H  0  1  N  N  N  -19.198  23.662  -22.010   3.477  -2.344   1.239  H2   YTN  31  
YTN  H3   H3   H  0  1  N  N  N  -16.466  20.961  -23.489   4.117   0.713  -1.665  H3   YTN  32  
YTN  H4   H4   H  0  1  N  N  N  -20.023  19.276  -26.323   8.902   0.754  -0.542  H4   YTN  33  
YTN  H5   H5   H  0  1  N  N  N  -19.420  21.920  -20.271  -0.605  -1.162   1.570  H5   YTN  34  
YTN  H6   H6   H  0  1  N  N  N  -19.397  21.272  -18.595  -0.753   0.578   1.915  H6   YTN  35  
YTN  H7   H7   H  0  1  N  N  N  -17.399  22.633  -19.150  -0.285  -0.607  -0.866  H7   YTN  36  
YTN  H8   H8   H  0  1  N  N  N  -17.005  20.526  -21.272   1.579  -0.081   1.323  H8   YTN  37  
YTN  H9   H9   H  0  1  N  N  N  -15.928  22.994  -22.041   2.069  -0.586  -1.658  H9   YTN  38  
YTN  H10  H10  H  0  1  N  N  N  -17.319  23.503  -21.025   1.801  -1.861  -0.446  H10  YTN  39  
YTN  H11  H11  H  0  1  N  N  N  -14.663  20.746  -21.015   2.488   1.980   0.725  H11  YTN  40  
YTN  H12  H12  H  0  1  N  N  N  -14.803  22.341  -20.200   2.346   1.628  -1.025  H12  YTN  41  
YTN  H13  H13  H  0  1  N  N  N  -20.340  20.571  -21.825  -2.689   1.833   1.165  H13  YTN  42  
YTN  H14  H14  H  0  1  N  N  N  -18.371  18.719  -18.526  -2.337  -2.337   0.347  H14  YTN  43  
YTN  H15  H15  H  0  1  N  N  N  -17.302  15.254  -18.406  -3.171  -3.636  -1.061  H15  YTN  44  
YTN  H16  H16  H  0  1  N  N  N  -16.929  16.228  -19.869  -3.586  -3.999   0.631  H16  YTN  45  
YTN  H17  H17  H  0  1  N  N  N  -17.263  17.047  -18.305  -4.560  -4.686  -0.691  H17  YTN  46  
YTN  H18  H18  H  0  1  N  N  N  -19.960  14.539  -22.977  -6.370   0.845  -1.873  H18  YTN  47  
YTN  H19  H19  H  0  1  N  N  N  -19.676  16.222  -23.538  -6.224  -0.897  -2.211  H19  YTN  48  
YTN  H20  H20  H  0  1  N  N  N  -18.534  15.457  -22.382  -7.791  -0.215  -1.712  H20  YTN  49  
YTN  H21  H21  H  0  1  N  N  N  -22.905  18.744  -23.889  -4.176   3.049   1.998  H21  YTN  50  
YTN  H22  H22  H  0  1  N  N  N  -22.974  18.320  -22.145  -3.761   3.412   0.305  H22  YTN  51  
YTN  H23  H23  H  0  1  N  N  N  -22.355  19.927  -22.655  -5.288   4.011   0.996  H23  YTN  52  
YTN  H25  H25  H  0  1  N  N  N  -19.354  20.455  -27.501   7.843   1.544   0.669  H25  YTN  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YTN  C07  O02  SING  N  N   1  
YTN  C07  O01  SING  N  N   2  
YTN  O02  C02  SING  N  N   3  
YTN  O01  C01  SING  N  N   4  
YTN  C02  C01  DOUB  Y  N   5  
YTN  C02  C03  SING  Y  N   6  
YTN  C01  C06  SING  Y  N   7  
YTN  C03  C04  DOUB  Y  N   8  
YTN  C06  C05  DOUB  Y  N   9  
YTN  O07  C22  SING  N  N  10  
YTN  O07  C16  SING  N  N  11  
YTN  C04  C05  SING  Y  N  12  
YTN  C05  C11  SING  N  N  13  
YTN  C21  O06  SING  N  N  14  
YTN  C16  C15  DOUB  Y  N  15  
YTN  C16  C17  SING  Y  N  16  
YTN  C11  C10  SING  N  N  17  
YTN  O06  C17  SING  N  N  18  
YTN  C15  C14  SING  Y  N  19  
YTN  C17  C18  DOUB  Y  N  20  
YTN  C10  C13  SING  N  N  21  
YTN  C10  C09  SING  N  N  22  
YTN  C13  O03  SING  N  N  23  
YTN  C14  C08  SING  N  N  24  
YTN  C14  C19  DOUB  Y  N  25  
YTN  C18  C19  SING  Y  N  26  
YTN  C18  O05  SING  N  N  27  
YTN  C08  C09  SING  N  N  28  
YTN  C09  C12  SING  N  N  29  
YTN  O05  C20  SING  N  N  30  
YTN  O03  C12  SING  N  N  31  
YTN  C12  O04  DOUB  N  N  32  
YTN  C03  H1   SING  N  N  33  
YTN  C04  H2   SING  N  N  34  
YTN  C06  H3   SING  N  N  35  
YTN  C07  H4   SING  N  N  36  
YTN  C08  H5   SING  N  N  37  
YTN  C08  H6   SING  N  N  38  
YTN  C09  H7   SING  N  N  39  
YTN  C10  H8   SING  N  N  40  
YTN  C11  H9   SING  N  N  41  
YTN  C11  H10  SING  N  N  42  
YTN  C13  H11  SING  N  N  43  
YTN  C13  H12  SING  N  N  44  
YTN  C15  H13  SING  N  N  45  
YTN  C19  H14  SING  N  N  46  
YTN  C20  H15  SING  N  N  47  
YTN  C20  H16  SING  N  N  48  
YTN  C20  H17  SING  N  N  49  
YTN  C21  H18  SING  N  N  50  
YTN  C21  H19  SING  N  N  51  
YTN  C21  H20  SING  N  N  52  
YTN  C22  H21  SING  N  N  53  
YTN  C22  H22  SING  N  N  54  
YTN  C22  H23  SING  N  N  55  
YTN  C07  H25  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YTN  InChI             InChI                 1.03   "InChI=1S/C22H24O7/c1-24-19-9-14(10-20(25-2)21(19)26-3)7-16-15(11-27-22(16)23)6-13-4-5-17-18(8-13)29-12-28-17/h4-5,8-10,15-16H,6-7,11-12H2,1-3H3/t15-,16+/m0/s1"  
YTN  InChIKey          InChI                 1.03   GMLDZDDTZKXJLU-JKSUJKDBSA-N  
YTN  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(C[C@@H]2[C@H](COC2=O)Cc3ccc4OCOc4c3)cc(OC)c1OC"  
YTN  SMILES            CACTVS                3.385  "COc1cc(C[CH]2[CH](COC2=O)Cc3ccc4OCOc4c3)cc(OC)c1OC"  
YTN  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cc(cc(c1OC)OC)C[C@@H]2[C@H](COC2=O)Cc3ccc4c(c3)OCO4"  
YTN  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cc(cc(c1OC)OC)CC2C(COC2=O)Cc3ccc4c(c3)OCO4"  
#
_pdbx_chem_comp_identifier.comp_id          YTN
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{R},4~{R})-4-(1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YTN  "Create component"  2021-02-17  PDBJ  
YTN  "Initial release"   2021-12-15  RCSB  
##
