data_Y7N
# 
_chem_comp.id                                    Y7N 
_chem_comp.name                                  "5-[(E)-[(2S)-2-(6-azanylhexanoylamino)-2,3-dihydroinden-1-ylidene]methyl]-1,3-benzodioxole-4-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-12-07 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.474 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y7N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CIE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y7N C1   C1   C 0 1 Y N N -30.826 28.958 -12.233 -2.943 -3.555 0.455  C1   Y7N 1  
Y7N C2   C2   C 0 1 Y N N -30.860 27.849 -13.047 -2.127 -4.657 0.267  C2   Y7N 2  
Y7N C3   C3   C 0 1 Y N N -31.764 29.958 -12.359 -2.454 -2.286 0.237  C3   Y7N 3  
Y7N C4   C4   C 0 1 Y N N -33.228 32.367 -11.024 -2.450 0.088  1.505  C4   Y7N 4  
Y7N C5   C5   C 0 1 Y N N -31.839 27.721 -14.005 -0.816 -4.490 -0.141 C5   Y7N 5  
Y7N C6   C6   C 0 1 Y N N -32.462 33.120 -10.157 -3.673 0.315  2.103  C6   Y7N 6  
Y7N C7   C7   C 0 1 Y N N -32.741 29.829 -13.319 -1.125 -2.107 -0.177 C7   Y7N 7  
Y7N C8   C8   C 0 1 Y N N -33.367 32.736 -12.350 -2.174 0.624  0.247  C8   Y7N 8  
Y7N C9   C9   C 0 1 Y N N -32.756 33.881 -12.837 -3.155 1.400  -0.411 C9   Y7N 9  
Y7N C10  C10  C 0 1 Y N N -32.771 28.721 -14.120 -0.311 -3.222 -0.363 C10  Y7N 10 
Y7N C11  C11  C 0 1 Y N N -31.857 34.245 -10.653 -4.642 1.075  1.465  C11  Y7N 11 
Y7N C12  C12  C 0 1 Y N N -32.003 34.612 -11.953 -4.389 1.621  0.208  C12  Y7N 12 
Y7N C13  C13  C 0 1 N N N -33.862 30.687 -13.665 -0.383 -0.867 -0.471 C13  Y7N 13 
Y7N C14  C14  C 0 1 N N N -34.181 31.917 -13.234 -0.872 0.383  -0.390 C14  Y7N 14 
Y7N C15  C15  C 0 1 N N N -32.866 34.338 -14.241 -2.879 1.972  -1.738 C15  Y7N 15 
Y7N C16  C16  C 0 1 N N N -36.609 30.982 -15.656 3.256  -0.435 -0.350 C16  Y7N 16 
Y7N C17  C17  C 0 1 N N N -33.894 28.742 -15.087 1.063  -2.779 -0.805 C17  Y7N 17 
Y7N C18  C18  C 0 1 N N N -30.580 35.918 -11.027 -6.265 2.536  0.997  C18  Y7N 18 
Y7N C19  C19  C 0 1 N N S -34.739 29.881 -14.565 1.020  -1.247 -0.877 C19  Y7N 19 
Y7N C20  C20  C 0 1 N N N -37.078 31.461 -16.985 4.256  0.160  0.608  C20  Y7N 20 
Y7N C21  C21  C 0 1 N N N -36.938 32.959 -17.019 5.604  0.321  -0.097 C21  Y7N 21 
Y7N C22  C22  C 0 1 N N N -37.603 33.457 -18.279 6.619  0.925  0.876  C22  Y7N 22 
Y7N C23  C23  C 0 1 N N N -36.602 34.193 -19.129 7.968  1.086  0.171  C23  Y7N 23 
Y7N C24  C24  C 0 1 N N N -37.131 34.283 -20.534 8.983  1.690  1.144  C24  Y7N 24 
Y7N N26  N26  N 0 1 N N N -35.267 30.677 -15.643 1.992  -0.668 0.054  N26  Y7N 25 
Y7N N25  N25  N 0 1 N N N -36.245 35.213 -21.272 10.278 1.844  0.467  N25  Y7N 26 
Y7N O31  O31  O 0 1 N N N -31.845 34.874 -14.750 -3.148 1.340  -2.740 O31  Y7N 27 
Y7N O27  O27  O 0 1 N N N -33.972 34.177 -14.828 -2.328 3.198  -1.842 O27  Y7N 28 
Y7N O28  O28  O 0 1 N N N -37.381 30.891 -14.715 3.590  -0.704 -1.485 O28  Y7N 29 
Y7N O29  O29  O 0 1 N N N -31.064 35.110 -9.951  -5.903 1.432  1.848  O29  Y7N 30 
Y7N O30  O30  O 0 1 N N N -31.319 35.758 -12.243 -5.489 2.317  -0.195 O30  Y7N 31 
Y7N H1   H1   H 0 1 N N N -30.052 29.045 -11.484 -3.967 -3.690 0.769  H1   Y7N 32 
Y7N H2   H2   H 0 1 N N N -30.115 27.076 -12.933 -2.514 -5.650 0.440  H2   Y7N 33 
Y7N H3   H3   H 0 1 N N N -31.733 30.826 -11.717 -3.093 -1.429 0.384  H3   Y7N 34 
Y7N H5   H5   H 0 1 N N N -31.873 26.855 -14.650 -0.184 -5.353 -0.286 H5   Y7N 35 
Y7N H4   H4   H 0 1 N N N -33.725 31.479 -10.663 -1.702 -0.502 2.014  H4   Y7N 36 
Y7N H6   H6   H 0 1 N N N -32.344 32.832 -9.123  -3.877 -0.105 3.077  H6   Y7N 37 
Y7N H14  H14  H 0 1 N N N -35.119 32.333 -13.571 -0.307 1.210  -0.794 H14  Y7N 38 
Y7N H171 H171 H 0 0 N N N -33.538 28.944 -16.108 1.811  -3.100 -0.080 H171 Y7N 39 
Y7N H172 H172 H 0 0 N N N -34.450 27.793 -15.074 1.292  -3.193 -1.787 H172 Y7N 40 
Y7N H19  H19  H 0 1 N N N -35.567 29.463 -13.974 1.223  -0.910 -1.893 H19  Y7N 41 
Y7N H27  H27  H 0 1 N N N -33.915 34.522 -15.711 -2.165 3.532  -2.735 H27  Y7N 42 
Y7N H201 H201 H 0 0 N N N -36.466 31.011 -17.781 3.902  1.136  0.943  H201 Y7N 43 
Y7N H202 H202 H 0 0 N N N -38.132 31.182 -17.131 4.372  -0.499 1.468  H202 Y7N 44 
Y7N H26  H26  H 0 1 N N N -34.666 31.004 -16.373 1.725  -0.453 0.962  H26  Y7N 45 
Y7N H181 H181 H 0 0 N N N -30.637 36.973 -10.722 -7.331 2.511  0.771  H181 Y7N 46 
Y7N H182 H182 H 0 0 N N N -29.531 35.648 -11.220 -5.992 3.483  1.462  H182 Y7N 47 
Y7N H211 H211 H 0 0 N N N -37.427 33.400 -16.138 5.958  -0.654 -0.431 H211 Y7N 48 
Y7N H212 H212 H 0 0 N N N -35.873 33.235 -17.024 5.489  0.980  -0.957 H212 Y7N 49 
Y7N H221 H221 H 0 0 N N N -38.002 32.601 -18.844 6.266  1.901  1.211  H221 Y7N 50 
Y7N H222 H222 H 0 0 N N N -38.426 34.137 -18.013 6.735  0.266  1.736  H222 Y7N 51 
Y7N H231 H231 H 0 0 N N N -36.449 35.205 -18.726 8.321  0.111  -0.163 H231 Y7N 52 
Y7N H232 H232 H 0 0 N N N -35.646 33.649 -19.128 7.852  1.745  -0.689 H232 Y7N 53 
Y7N H241 H241 H 0 0 N N N -37.115 33.290 -21.008 8.629  2.665  1.478  H241 Y7N 54 
Y7N H242 H242 H 0 0 N N N -38.161 34.669 -20.526 9.099  1.031  2.004  H242 Y7N 55 
Y7N H251 H251 H 0 0 N N N -36.565 35.300 -22.216 10.184 2.399  -0.371 H251 Y7N 56 
Y7N H252 H252 H 0 0 N N N -36.261 36.110 -20.830 10.965 2.242  1.089  H252 Y7N 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y7N C1  C2   SING Y N 1  
Y7N C1  C3   DOUB Y N 2  
Y7N C2  C5   DOUB Y N 3  
Y7N C3  C7   SING Y N 4  
Y7N C4  C6   SING Y N 5  
Y7N C4  C8   DOUB Y N 6  
Y7N C5  C10  SING Y N 7  
Y7N C6  C11  DOUB Y N 8  
Y7N C7  C10  DOUB Y N 9  
Y7N C7  C13  SING N N 10 
Y7N C8  C9   SING Y N 11 
Y7N C8  C14  SING N N 12 
Y7N C9  C12  DOUB Y N 13 
Y7N C9  C15  SING N N 14 
Y7N C10 C17  SING N N 15 
Y7N C11 C12  SING Y N 16 
Y7N C11 O29  SING N N 17 
Y7N C12 O30  SING N N 18 
Y7N C13 C14  DOUB N E 19 
Y7N C13 C19  SING N N 20 
Y7N C15 O31  DOUB N N 21 
Y7N C15 O27  SING N N 22 
Y7N C16 C20  SING N N 23 
Y7N C16 N26  SING N N 24 
Y7N C16 O28  DOUB N N 25 
Y7N C17 C19  SING N N 26 
Y7N C18 O29  SING N N 27 
Y7N C18 O30  SING N N 28 
Y7N C19 N26  SING N N 29 
Y7N C20 C21  SING N N 30 
Y7N C21 C22  SING N N 31 
Y7N C22 C23  SING N N 32 
Y7N C23 C24  SING N N 33 
Y7N C24 N25  SING N N 34 
Y7N C1  H1   SING N N 35 
Y7N C2  H2   SING N N 36 
Y7N C3  H3   SING N N 37 
Y7N C5  H5   SING N N 38 
Y7N C4  H4   SING N N 39 
Y7N C6  H6   SING N N 40 
Y7N C14 H14  SING N N 41 
Y7N C17 H171 SING N N 42 
Y7N C17 H172 SING N N 43 
Y7N C19 H19  SING N N 44 
Y7N O27 H27  SING N N 45 
Y7N C20 H201 SING N N 46 
Y7N C20 H202 SING N N 47 
Y7N N26 H26  SING N N 48 
Y7N C18 H181 SING N N 49 
Y7N C18 H182 SING N N 50 
Y7N C21 H211 SING N N 51 
Y7N C21 H212 SING N N 52 
Y7N C22 H221 SING N N 53 
Y7N C22 H222 SING N N 54 
Y7N C23 H231 SING N N 55 
Y7N C23 H232 SING N N 56 
Y7N C24 H241 SING N N 57 
Y7N C24 H242 SING N N 58 
Y7N N25 H251 SING N N 59 
Y7N N25 H252 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y7N SMILES           ACDLabs              12.01 "O=C(NC2C(/c1ccccc1C2)=C/c3ccc4OCOc4c3C(=O)O)CCCCCN"                                                                                                                                                    
Y7N InChI            InChI                1.03  "InChI=1S/C24H26N2O5/c25-11-5-1-2-8-21(27)26-19-13-15-6-3-4-7-17(15)18(19)12-16-9-10-20-23(31-14-30-20)22(16)24(28)29/h3-4,6-7,9-10,12,19H,1-2,5,8,11,13-14,25H2,(H,26,27)(H,28,29)/b18-12+/t19-/m0/s1" 
Y7N InChIKey         InChI                1.03  FRMVVXQYUFKPPV-GQEMFKIVSA-N                                                                                                                                                                             
Y7N SMILES_CANONICAL CACTVS               3.385 "NCCCCCC(=O)N[C@H]1Cc2ccccc2\C1=C/c3ccc4OCOc4c3C(O)=O"                                                                                                                                                  
Y7N SMILES           CACTVS               3.385 "NCCCCCC(=O)N[CH]1Cc2ccccc2C1=Cc3ccc4OCOc4c3C(O)=O"                                                                                                                                                     
Y7N SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc\2c(c1)C[C@@H](/C2=C/c3ccc4c(c3C(=O)O)OCO4)NC(=O)CCCCCN"                                                                                                                                          
Y7N SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)CC(C2=Cc3ccc4c(c3C(=O)O)OCO4)NC(=O)CCCCCN"                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y7N "SYSTEMATIC NAME" ACDLabs              12.01 "5-[(E)-{(2S)-2-[(6-aminohexanoyl)amino]-2,3-dihydro-1H-inden-1-ylidene}methyl]-1,3-benzodioxole-4-carboxylic acid" 
Y7N "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-[(E)-[(2S)-2-(6-azanylhexanoylamino)-2,3-dihydroinden-1-ylidene]methyl]-1,3-benzodioxole-4-carboxylic acid"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y7N "Create component"  2013-12-07 EBI  
Y7N "Initial release"   2014-01-08 RCSB 
Y7N "Modify descriptor" 2014-09-05 RCSB 
# 
