data_XON
# 
_chem_comp.id                                    XON 
_chem_comp.name                                  "~{N}-[3,5-bis(fluoranyl)-4-[[3-[1-(trifluoromethyl)cyclopropyl]-1~{H}-pyrrolo[2,3-b]pyridin-4-yl]oxy]phenyl]-2,9-dioxa-4-azaspiro[5.5]undec-3-en-3-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H23 F5 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-08 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        522.467 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XON 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PAR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XON N1  N1  N 0 1 N N N N N N 14.557 15.165 31.209 3.170  -1.432 -1.406 N1  XON 1  
XON N3  N2  N 0 1 Y N N N N N 22.158 12.663 28.146 -4.692 -3.278 0.476  N3  XON 2  
XON C4  C1  C 0 1 Y N N N N N 16.834 12.270 30.827 -0.396 -0.577 -1.705 C4  XON 3  
XON C5  C2  C 0 1 Y N N N N N 15.940 13.125 31.423 0.906  -0.890 -2.049 C5  XON 4  
XON C6  C3  C 0 1 Y N N N N N 15.482 14.215 30.694 1.851  -1.115 -1.057 C6  XON 5  
XON C7  C4  C 0 1 N N N N N N 13.561 15.063 32.149 4.212  -0.997 -0.621 C7  XON 6  
XON C8  C5  C 0 1 N N N N N N 11.760 16.042 33.460 6.587  -1.016 -0.153 C8  XON 7  
XON C10 C6  C 0 1 N N N N N N 12.451 13.685 33.722 4.938  -0.007 1.411  C10 XON 8  
XON C13 C7  C 0 1 Y N N N N N 20.116 12.917 29.418 -2.518 -2.517 -0.031 C13 XON 9  
XON C15 C8  C 0 1 Y N N N N N 21.530 11.702 27.468 -5.132 -2.037 0.651  C15 XON 10 
XON C17 C9  C 0 1 Y N N N N N 19.946 10.267 26.718 -5.037 0.255  0.747  C17 XON 11 
XON C20 C10 C 0 1 N N N N N N 18.169 9.338  25.090 -3.420 2.069  1.662  C20 XON 12 
XON C21 C11 C 0 1 N N N N N N 18.626 8.300  27.400 -4.537 2.325  -0.690 C21 XON 13 
XON C22 C12 C 0 1 N N N N N N 10.916 14.732 35.415 6.190  1.454  -0.186 C22 XON 14 
XON C24 C13 C 0 1 N N N N N N 13.210 16.067 36.597 8.701  0.710  1.030  C24 XON 15 
XON C1  C14 C 0 1 Y N N N N N 20.200 11.295 27.687 -4.252 -0.953 0.487  C1  XON 16 
XON C2  C15 C 0 1 Y N N N N N 19.494 11.926 28.705 -2.916 -1.197 0.138  C2  XON 17 
XON O1  O1  O 0 1 N N N N N N 18.185 11.566 28.984 -2.039 -0.175 -0.029 O1  XON 18 
XON C3  C16 C 0 1 Y N N N N N 17.293 12.466 29.541 -0.757 -0.482 -0.367 C3  XON 19 
XON F1  F1  F 0 1 N N N N N N 17.312 11.219 31.512 -1.316 -0.359 -2.670 F1  XON 20 
XON N2  N3  N 0 1 N N N N N N 12.732 16.112 32.367 5.401  -1.397 -0.916 N2  XON 21 
XON C9  C17 C 0 1 N N N N N N 12.124 14.965 34.486 6.278  0.213  0.703  C9  XON 22 
XON O2  O2  O 0 1 N N N N N N 13.546 13.892 32.791 3.931  -0.176 0.407  O2  XON 23 
XON C11 C18 C 0 1 Y N N N N N 15.935 14.437 29.400 1.489  -1.026 0.280  C11 XON 24 
XON C12 C19 C 0 1 Y N N N N N 16.843 13.575 28.852 0.189  -0.702 0.625  C12 XON 25 
XON F2  F2  F 0 1 N N N N N N 17.270 13.791 27.593 -0.163 -0.614 1.926  F2  XON 26 
XON C14 C20 C 0 1 Y N N N N N 21.436 13.253 29.107 -3.442 -3.532 0.148  C14 XON 27 
XON N4  N4  N 0 1 Y N N N N N 22.046 10.981 26.436 -6.357 -1.514 0.987  N4  XON 28 
XON C16 C21 C 0 1 Y N N N N N 21.093 10.109 25.998 -6.284 -0.147 1.040  C16 XON 29 
XON C18 C22 C 0 1 N N N N N N 18.726 9.483  26.474 -4.540 1.676  0.696  C18 XON 30 
XON C19 C23 C 0 1 N N N N N N 17.456 10.170 26.073 -4.844 2.575  1.896  C19 XON 31 
XON F3  F3  F 0 1 N N N N N N 17.496 7.619  27.235 -5.620 1.843  -1.432 F3  XON 32 
XON F4  F4  F 0 1 N N N N N N 19.601 7.437  27.189 -4.644 3.713  -0.555 F4  XON 33 
XON F5  F5  F 0 1 N N N N N N 18.701 8.658  28.681 -3.343 2.012  -1.349 F5  XON 34 
XON C23 C24 C 0 1 N N N N N N 10.931 15.643 36.629 7.558  1.713  -0.825 C23 XON 35 
XON O3  O3  O 0 1 N N N N N N 12.146 15.533 37.374 8.540  1.863  0.201  O3  XON 36 
XON C25 C25 C 0 1 N N N N N N 13.402 15.372 35.263 7.381  0.410  1.745  C25 XON 37 
XON H1  H1  H 0 1 N N N N N N 14.649 16.078 30.812 3.348  -1.962 -2.198 H1  XON 38 
XON H2  H2  H 0 1 N N N N N N 15.601 12.954 32.434 1.188  -0.959 -3.089 H2  XON 39 
XON H3  H3  H 0 1 N N N N N N 11.725 17.018 33.967 6.880  -1.844 0.494  H3  XON 40 
XON H4  H4  H 0 1 N N N N N N 10.770 15.812 33.040 7.403  -0.785 -0.838 H4  XON 41 
XON H5  H5  H 0 1 N N N N N N 11.560 13.364 33.162 4.990  -0.902 2.030  H5  XON 42 
XON H6  H6  H 0 1 N N N N N N 12.734 12.901 34.440 4.702  0.858  2.031  H6  XON 43 
XON H7  H7  H 0 1 N N N N N N 19.593 13.432 30.210 -1.498 -2.749 -0.300 H7  XON 44 
XON H8  H8  H 0 1 N N N N N N 17.739 8.378  24.770 -3.042 1.298  2.335  H8  XON 45 
XON H9  H9  H 0 1 N N N N N N 18.682 9.812  24.240 -2.681 2.789  1.311  H9  XON 46 
XON H10 H10 H 0 1 N N N N N N 9.993  14.918 34.846 5.448  1.291  -0.967 H10 XON 47 
XON H11 H11 H 0 1 N N N N N N 10.931 13.687 35.758 5.902  2.315  0.418  H11 XON 48 
XON H12 H12 H 0 1 N N N N N N 14.142 15.974 37.174 8.983  -0.144 0.414  H12 XON 49 
XON H13 H13 H 0 1 N N N N N N 13.001 17.130 36.407 9.480  0.899  1.769  H13 XON 50 
XON H14 H14 H 0 1 N N N N N N 15.574 15.282 28.833 2.224  -1.201 1.052  H14 XON 51 
XON H15 H15 H 0 1 N N N N N N 21.905 14.040 29.679 -3.130 -4.557 0.016  H15 XON 52 
XON H16 H16 H 0 1 N N N N N N 22.969 11.075 26.062 -7.156 -2.035 1.160  H16 XON 53 
XON H17 H17 H 0 1 N N N N N N 21.227 9.397  25.197 -7.106 0.510  1.281  H17 XON 54 
XON H18 H18 H 0 1 N N N N N N 17.438 11.264 25.955 -5.404 2.138  2.723  H18 XON 55 
XON H19 H19 H 0 1 N N N N N N 16.495 9.829  26.485 -5.043 3.628  1.699  H19 XON 56 
XON H20 H20 H 0 1 N N N N N N 10.816 16.684 36.292 7.825  0.871  -1.464 H20 XON 57 
XON H21 H21 H 0 1 N N N N N N 10.089 15.374 37.284 7.513  2.624  -1.422 H21 XON 58 
XON H22 H22 H 0 1 N N N N N N 13.983 14.456 35.448 7.486  -0.498 2.339  H22 XON 59 
XON H23 H23 H 0 1 N N N N N N 13.980 16.049 34.617 7.122  1.244  2.397  H23 XON 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XON C20 C19 SING N N 1  
XON C20 C18 SING N N 2  
XON C16 N4  SING Y N 3  
XON C16 C17 DOUB Y N 4  
XON C19 C18 SING N N 5  
XON N4  C15 SING Y N 6  
XON C18 C17 SING N N 7  
XON C18 C21 SING N N 8  
XON C17 C1  SING Y N 9  
XON F4  C21 SING N N 10 
XON F3  C21 SING N N 11 
XON C21 F5  SING N N 12 
XON C15 C1  DOUB Y N 13 
XON C15 N3  SING Y N 14 
XON F2  C12 SING N N 15 
XON C1  C2  SING Y N 16 
XON N3  C14 DOUB Y N 17 
XON C2  O1  SING N N 18 
XON C2  C13 DOUB Y N 19 
XON C12 C11 DOUB Y N 20 
XON C12 C3  SING Y N 21 
XON O1  C3  SING N N 22 
XON C14 C13 SING Y N 23 
XON C11 C6  SING Y N 24 
XON C3  C4  DOUB Y N 25 
XON C6  N1  SING N N 26 
XON C6  C5  DOUB Y N 27 
XON C4  C5  SING Y N 28 
XON C4  F1  SING N N 29 
XON N1  C7  SING N N 30 
XON C7  N2  DOUB N N 31 
XON C7  O2  SING N N 32 
XON N2  C8  SING N N 33 
XON O2  C10 SING N N 34 
XON C8  C9  SING N N 35 
XON C10 C9  SING N N 36 
XON C9  C25 SING N N 37 
XON C9  C22 SING N N 38 
XON C25 C24 SING N N 39 
XON C22 C23 SING N N 40 
XON C24 O3  SING N N 41 
XON C23 O3  SING N N 42 
XON N1  H1  SING N N 43 
XON C5  H2  SING N N 44 
XON C8  H3  SING N N 45 
XON C8  H4  SING N N 46 
XON C10 H5  SING N N 47 
XON C10 H6  SING N N 48 
XON C13 H7  SING N N 49 
XON C20 H8  SING N N 50 
XON C20 H9  SING N N 51 
XON C22 H10 SING N N 52 
XON C22 H11 SING N N 53 
XON C24 H12 SING N N 54 
XON C24 H13 SING N N 55 
XON C11 H14 SING N N 56 
XON C14 H15 SING N N 57 
XON N4  H16 SING N N 58 
XON C16 H17 SING N N 59 
XON C19 H18 SING N N 60 
XON C19 H19 SING N N 61 
XON C23 H20 SING N N 62 
XON C23 H21 SING N N 63 
XON C25 H22 SING N N 64 
XON C25 H23 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XON InChI            InChI                1.06  "InChI=1S/C25H23F5N4O3/c26-16-9-14(34-22-33-12-23(13-36-22)4-7-35-8-5-23)10-17(27)20(16)37-18-1-6-31-21-19(18)15(11-32-21)24(2-3-24)25(28,29)30/h1,6,9-11H,2-5,7-8,12-13H2,(H,31,32)(H,33,34)" 
XON InChIKey         InChI                1.06  FXMIIWBGTCDJJQ-UHFFFAOYSA-N                                                                                                                                                                    
XON SMILES_CANONICAL CACTVS               3.385 "Fc1cc(NC2=NCC3(CCOCC3)CO2)cc(F)c1Oc4ccnc5[nH]cc(c45)C6(CC6)C(F)(F)F"                                                                                                                          
XON SMILES           CACTVS               3.385 "Fc1cc(NC2=NCC3(CCOCC3)CO2)cc(F)c1Oc4ccnc5[nH]cc(c45)C6(CC6)C(F)(F)F"                                                                                                                          
XON SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc2c(c1Oc3c(cc(cc3F)NC4=NCC5(CCOCC5)CO4)F)c(c[nH]2)C6(CC6)C(F)(F)F"                                                                                                                        
XON SMILES           "OpenEye OEToolkits" 2.0.7 "c1cnc2c(c1Oc3c(cc(cc3F)NC4=NCC5(CCOCC5)CO4)F)c(c[nH]2)C6(CC6)C(F)(F)F"                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           XON 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[3,5-bis(fluoranyl)-4-[[3-[1-(trifluoromethyl)cyclopropyl]-1~{H}-pyrrolo[2,3-b]pyridin-4-yl]oxy]phenyl]-2,9-dioxa-4-azaspiro[5.5]undec-3-en-3-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XON "Create component" 2023-06-08 PDBE 
XON "Initial release"  2024-06-26 RCSB 
# 
