data_X6N
# 
_chem_comp.id                                    X6N 
_chem_comp.name                                  "[(2~{R},3~{S},4~{R},5~{S})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate" 
_chem_comp.type                                  "D-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C7 H15 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-24 
_chem_comp.pdbx_modified_date                    2024-10-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        274.162 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X6N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WO1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X6N C1  C1  C 0 1 N N S N N N 157.262 158.442 155.214 2.813  0.470  -0.327 C1  X6N 1  
X6N C2  C2  C 0 1 N N S N N N 156.993 158.423 153.905 2.289  -0.967 -0.261 C2  X6N 2  
X6N C3  C3  C 0 1 N N R N N N 156.397 157.309 153.501 0.887  -1.020 -0.877 C3  X6N 3  
X6N C4  C4  C 0 1 N N S N N N 157.119 156.155 153.779 -0.022 -0.035 -0.136 C4  X6N 4  
X6N C48 C5  C 0 1 N N N N N N 158.592 160.019 152.835 3.427  -2.013 1.571  C48 X6N 5  
X6N C5  C6  C 0 1 N N R N N N 157.387 156.073 155.178 0.591  1.366  -0.208 C5  X6N 6  
X6N C6  C7  C 0 1 N N N N N N 158.249 154.991 155.500 -0.280 2.345  0.581  C6  X6N 7  
X6N O3  O1  O 0 1 N N N N N N 156.155 157.450 152.065 0.361  -2.343 -0.753 O3  X6N 8  
X6N O4  O2  O 0 1 N N N N N N 156.392 155.076 153.421 -1.313 -0.023 -0.749 O4  X6N 9  
X6N O47 O3  O 0 1 N N N N N N 158.269 158.588 153.145 2.229  -1.391 1.102  O47 X6N 10 
X6N O5  O4  O 0 1 N N N N N N 157.901 157.263 155.673 1.905  1.338  0.354  O5  X6N 11 
X6N O52 O5  O 0 1 N N N N N N 157.778 154.222 156.596 0.227  3.671  0.419  O52 X6N 12 
X6N O54 O6  O 0 1 N N N N N N 157.904 154.795 151.166 -2.933 0.661  1.205  O54 X6N 13 
X6N O55 O7  O 0 1 N N N N N N 156.066 152.916 151.742 -3.901 -0.418 -0.988 O55 X6N 14 
X6N O56 O8  O 0 1 N N N N N N 155.281 155.360 150.951 -2.511 -1.761 0.635  O56 X6N 15 
X6N P51 P1  P 0 1 N N N N N N 156.413 154.526 151.813 -2.661 -0.415 0.039  P51 X6N 16 
X6N H1  H1  H 0 1 N N N N N N 157.936 159.286 155.422 3.792  0.522  0.148  H1  X6N 17 
X6N H3  H3  H 0 1 N N N N N N 156.357 159.285 153.656 2.957  -1.625 -0.817 H3  X6N 18 
X6N H4  H4  H 0 1 N N N N N N 155.416 157.227 153.991 0.942  -0.745 -1.930 H4  X6N 19 
X6N H5  H5  H 0 1 N N N N N N 158.072 156.173 153.229 -0.115 -0.339 0.906  H5  X6N 20 
X6N H6  H6  H 0 1 N N N N N N 159.539 160.069 152.277 3.637  -2.897 0.969  H6  X6N 21 
X6N H7  H7  H 0 1 N N N N N N 157.785 160.454 152.227 4.257  -1.312 1.489  H7  X6N 22 
X6N H8  H8  H 0 1 N N N N N N 158.689 160.584 153.774 3.300  -2.306 2.614  H8  X6N 23 
X6N H9  H9  H 0 1 N N N N N N 156.427 155.888 155.683 0.647  1.686  -1.248 H9  X6N 24 
X6N H10 H10 H 0 1 N N N N N N 158.334 154.335 154.621 -1.304 2.300  0.211  H10 X6N 25 
X6N H11 H11 H 0 1 N N N N N N 159.240 155.395 155.754 -0.263 2.077  1.638  H11 X6N 26 
X6N H12 H12 H 0 1 N N N N N N 155.829 156.629 151.716 0.887  -3.020 -1.199 H12 X6N 27 
X6N H13 H13 H 0 1 N N N N N N 158.387 153.514 156.771 -0.278 4.346  0.893  H13 X6N 28 
X6N H14 H14 H 0 1 N N N N N N 157.826 155.379 150.421 -3.042 1.567  0.887  H14 X6N 29 
X6N H15 H15 H 0 1 N N N N N N 155.284 152.783 151.220 -4.748 -0.646 -0.581 H15 X6N 30 
X6N OXT OXT O 0 1 N Y N N N N 156.051 158.682 155.910 2.924  0.873  -1.694 O1  X6N 31 
X6N HXT HXT H 0 1 N Y N N N N 156.220 158.699 156.845 3.251  1.776  -1.811 H2  X6N 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X6N O56 P51 DOUB N N 1  
X6N O54 P51 SING N N 2  
X6N O55 P51 SING N N 3  
X6N P51 O4  SING N N 4  
X6N O3  C3  SING N N 5  
X6N C48 O47 SING N N 6  
X6N O47 C2  SING N N 7  
X6N O4  C4  SING N N 8  
X6N C3  C4  SING N N 9  
X6N C3  C2  SING N N 10 
X6N C4  C5  SING N N 11 
X6N C2  C1  SING N N 12 
X6N C5  C6  SING N N 13 
X6N C5  O5  SING N N 14 
X6N C1  O5  SING N N 15 
X6N C6  O52 SING N N 16 
X6N C1  H1  SING N N 17 
X6N C2  H3  SING N N 18 
X6N C3  H4  SING N N 19 
X6N C4  H5  SING N N 20 
X6N C48 H6  SING N N 21 
X6N C48 H7  SING N N 22 
X6N C48 H8  SING N N 23 
X6N C5  H9  SING N N 24 
X6N C6  H10 SING N N 25 
X6N C6  H11 SING N N 26 
X6N O3  H12 SING N N 27 
X6N O52 H13 SING N N 28 
X6N O54 H14 SING N N 29 
X6N O55 H15 SING N N 30 
X6N C1  OXT SING N N 31 
X6N OXT HXT SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X6N InChI            InChI                1.06  "InChI=1S/C7H15O9P/c1-14-6-4(9)5(16-17(11,12)13)3(2-8)15-7(6)10/h3-10H,2H2,1H3,(H2,11,12,13)/t3-,4+,5-,6+,7?/m1/s1" 
X6N InChIKey         InChI                1.06  NLMCYSYQBJOKBW-MSPRSRQBSA-N                                                                                         
X6N SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@@H](O)O[C@H](CO)[C@@H](O[P](O)(O)=O)[C@@H]1O"                                                          
X6N SMILES           CACTVS               3.385 "CO[CH]1[CH](O)O[CH](CO)[CH](O[P](O)(O)=O)[CH]1O"                                                                   
X6N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@H]1[C@H]([C@@H]([C@H](OC1O)CO)OP(=O)(O)O)O"                                                                   
X6N SMILES           "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(OC1O)CO)OP(=O)(O)O)O"                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           X6N 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{R},5~{S})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X6N "Create component" 2023-10-24 PDBJ 
X6N "Initial release"  2024-10-09 RCSB 
# 
