data_X4N
# 
_chem_comp.id                                    X4N 
_chem_comp.name                                  "(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopiperidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H36 F3 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-22 
_chem_comp.pdbx_modified_date                    2024-10-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        515.569 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X4N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UND 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X4N C10  C1  C 0 1 N N N N N N -19.131 22.191 -24.660 4.392  3.523  -0.326 C10  X4N 1  
X4N N12  N1  N 0 1 N N N N N N -16.676 22.586 -24.171 6.273  3.104  1.194  N12  X4N 2  
X4N C13  C2  C 0 1 N N N N N N -16.347 21.599 -25.120 5.914  1.823  1.281  C13  X4N 3  
X4N C15  C3  C 0 1 N N S N N N -19.311 16.629 -27.052 0.669  -1.500 0.525  C15  X4N 4  
X4N C17  C4  C 0 1 N N N N N N -19.726 13.914 -27.641 -0.782 -3.562 1.297  C17  X4N 5  
X4N C20  C5  C 0 1 N N S N N N -20.879 14.874 -27.304 -0.466 -3.545 -0.200 C20  X4N 6  
X4N C21  C6  C 0 1 N N N N N N -21.098 15.637 -25.969 -0.894 -2.303 -1.020 C21  X4N 7  
X4N C24  C7  C 0 1 N N S N N N -20.020 16.657 -23.221 -2.698 0.080  -0.631 C24  X4N 8  
X4N C26  C8  C 0 1 N N N N N N -19.536 18.908 -22.112 -1.566 -0.080 -2.852 C26  X4N 9  
X4N C28  C9  C 0 1 N N N N N N -21.544 17.585 -21.415 -3.878 0.853  -2.693 C28  X4N 10 
X4N C02  C10 C 0 1 N N N N N N -19.092 18.025 -27.422 1.824  -1.225 -0.403 C02  X4N 11 
X4N C04  C11 C 0 1 N N S N N N -17.825 19.941 -28.384 4.199  -0.873 -0.816 C04  X4N 12 
X4N C05  C12 C 0 1 N N N N N N -17.243 20.044 -29.826 4.705  -2.172 -1.387 C05  X4N 13 
X4N C07  C13 C 0 1 N N N N N N -16.880 20.710 -27.473 5.324  -0.184 -0.040 C07  X4N 14 
X4N C08  C14 C 0 1 N N S N N N -17.414 21.010 -26.059 4.855  1.198  0.420  C08  X4N 15 
X4N C09  C15 C 0 1 N N N N N N -18.687 21.805 -26.075 4.591  2.079  -0.803 C09  X4N 16 
X4N C11  C16 C 0 1 N N N N N N -18.103 23.069 -24.053 5.719  4.043  0.226  C11  X4N 17 
X4N C16  C17 C 0 1 N N R N N N -19.615 15.459 -27.883 0.563  -3.013 0.819  C16  X4N 18 
X4N C18  C18 C 0 1 N N N N N N -18.880 13.348 -26.572 -1.812 -2.554 1.811  C18  X4N 19 
X4N C19  C19 C 0 1 N N N N N N -19.971 13.070 -28.959 -0.779 -4.919 2.003  C19  X4N 20 
X4N C23  C20 C 0 1 N N N N N N -19.263 16.900 -24.529 -1.358 -0.044 0.047  C23  X4N 21 
X4N C25  C21 C 0 1 N N N N N N -20.649 18.014 -22.658 -2.521 0.752  -1.994 C25  X4N 22 
X4N C27  C22 C 0 1 N N N N N N -21.461 18.743 -23.789 -1.941 2.154  -1.800 C27  X4N 23 
X4N C30  C23 C 0 1 N N N N N N -19.365 14.783 -21.891 -4.928 0.741  0.097  C30  X4N 24 
X4N C31  C24 C 0 1 N N N N N N -18.433 14.140 -20.890 -5.848 1.575  0.951  C31  X4N 25 
X4N F32  F1  F 0 1 N N N N N N -18.601 14.620 -19.650 -7.177 1.242  0.667  F32  X4N 26 
X4N F33  F2  F 0 1 N N N N N N -17.113 14.420 -21.156 -5.584 1.325  2.302  F33  X4N 27 
X4N F34  F3  F 0 1 N N N N N N -18.523 12.796 -20.859 -5.637 2.930  0.678  F34  X4N 28 
X4N N03  N2  N 0 1 N N N N N N -17.962 18.554 -27.971 3.077  -1.140 0.086  N03  X4N 29 
X4N N06  N3  N 0 1 N N N N N N -17.755 20.946 -30.581 4.151  -3.276 -1.054 N06  X4N 30 
X4N N22  N4  N 0 1 N N N N N N -19.762 16.397 -25.739 -0.614 -1.153 -0.129 N22  X4N 31 
X4N N29  N5  N 0 1 N N N N N N -19.171 16.038 -22.242 -3.593 0.891  0.200  N29  X4N 32 
X4N O01  O1  O 0 1 N N N N N N -20.099 18.720 -27.258 1.626  -1.080 -1.591 O01  X4N 33 
X4N O14  O2  O 0 1 N N N N N N -15.174 21.191 -25.235 6.473  1.125  2.101  O14  X4N 34 
X4N O35  O3  O 0 1 N N N N N N -20.269 14.036 -22.281 -5.390 -0.064 -0.684 O35  X4N 35 
X4N O36  O4  O 0 1 N N N N N N -18.192 17.528 -24.477 -0.949 0.855  0.751  O36  X4N 36 
X4N H101 H1  H 0 0 N N N N N N -20.091 22.726 -24.708 4.075  4.145  -1.164 H101 X4N 37 
X4N H102 H2  H 0 0 N N N N N N -19.247 21.283 -24.050 3.633  3.549  0.455  H102 X4N 38 
X4N H121 H3  H 0 0 N N N N N N -15.967 22.966 -23.577 6.944  3.432  1.812  H121 X4N 39 
X4N H151 H4  H 0 0 N N N N N N -18.255 16.381 -26.871 0.786  -0.941 1.453  H151 X4N 40 
X4N H201 H5  H 0 0 N N N N N N -21.750 14.831 -27.975 -0.317 -4.486 -0.729 H201 X4N 41 
X4N H212 H6  H 0 0 N N N N N N -21.938 16.342 -26.056 -0.303 -2.229 -1.933 H212 X4N 42 
X4N H211 H7  H 0 0 N N N N N N -21.293 14.934 -25.146 -1.957 -2.352 -1.258 H211 X4N 43 
X4N H241 H8  H 0 0 N N N N N N -20.860 15.982 -23.442 -3.129 -0.912 -0.768 H241 X4N 44 
X4N H261 H9  H 0 0 N N N N N N -18.987 18.371 -21.324 -1.422 0.409  -3.815 H261 X4N 45 
X4N H263 H10 H 0 0 N N N N N N -18.845 19.171 -22.926 -0.606 -0.171 -2.343 H263 X4N 46 
X4N H262 H11 H 0 0 N N N N N N -19.975 19.825 -21.693 -1.989 -1.073 -3.008 H262 X4N 47 
X4N H281 H12 H 0 0 N N N N N N -22.363 16.937 -21.759 -4.291 -0.146 -2.832 H281 X4N 48 
X4N H283 H13 H 0 0 N N N N N N -20.925 17.039 -20.689 -4.558 1.446  -2.082 H283 X4N 49 
X4N H282 H14 H 0 0 N N N N N N -21.963 18.483 -20.938 -3.751 1.332  -3.664 H282 X4N 50 
X4N H041 H15 H 0 0 N N N N N N -18.809 20.432 -28.371 3.867  -0.224 -1.627 H041 X4N 51 
X4N H051 H16 H 0 0 N N N N N N -16.453 19.393 -30.170 5.536  -2.171 -2.078 H051 X4N 52 
X4N H071 H17 H 0 0 N N N N N N -15.957 20.121 -27.368 5.588  -0.786 0.829  H071 X4N 53 
X4N H072 H18 H 0 0 N N N N N N -16.649 21.670 -27.958 6.196  -0.075 -0.685 H072 X4N 54 
X4N H081 H19 H 0 0 N N N N N N -17.675 20.031 -25.630 3.934  1.094  0.995  H081 X4N 55 
X4N H092 H20 H 0 0 N N N N N N -18.527 22.722 -26.661 3.693  1.735  -1.317 H092 X4N 56 
X4N H091 H21 H 0 0 N N N N N N -19.478 21.202 -26.545 5.443  2.031  -1.481 H091 X4N 57 
X4N H111 H22 H 0 0 N N N N N N -18.168 24.053 -24.541 6.425  4.173  -0.595 H111 X4N 58 
X4N H112 H23 H 0 0 N N N N N N -18.337 23.174 -22.983 5.556  5.006  0.711  H112 X4N 59 
X4N H161 H24 H 0 0 N N N N N N -19.721 15.707 -28.950 1.479  -3.558 1.049  H161 X4N 60 
X4N H183 H25 H 0 0 N N N N N N -18.817 14.061 -25.737 -2.055 -1.846 1.019  H183 X4N 61 
X4N H181 H26 H 0 0 N N N N N N -19.321 12.405 -26.216 -2.716 -3.082 2.116  H181 X4N 62 
X4N H182 H27 H 0 0 N N N N N N -17.871 13.155 -26.966 -1.400 -2.017 2.665  H182 X4N 63 
X4N H192 H28 H 0 0 N N N N N N -20.619 13.638 -29.643 -0.156 -4.863 2.896  H192 X4N 64 
X4N H191 H29 H 0 0 N N N N N N -19.007 12.868 -29.449 -1.798 -5.184 2.286  H191 X4N 65 
X4N H193 H30 H 0 0 N N N N N N -20.457 12.118 -28.700 -0.380 -5.678 1.330  H193 X4N 66 
X4N H273 H31 H 0 0 N N N N N N -22.253 18.076 -24.161 -1.814 2.633  -2.771 H273 X4N 67 
X4N H271 H32 H 0 0 N N N N N N -21.915 19.659 -23.382 -2.621 2.747  -1.188 H271 X4N 68 
X4N H272 H33 H 0 0 N N N N N N -20.784 19.005 -24.616 -0.974 2.082  -1.301 H272 X4N 69 
X4N H031 H34 H 0 0 N N N N N N -17.176 17.949 -28.098 3.235  -1.257 1.036  H031 X4N 70 
X4N H061 H35 H 0 0 N N N N N N -17.336 20.956 -31.489 4.477  -4.112 -1.422 H061 X4N 71 
X4N H291 H36 H 0 0 N N N N N N -18.429 16.562 -21.825 -3.224 1.535  0.824  H291 X4N 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X4N C02 O01  DOUB N N 1  
X4N C04 N03  SING N N 2  
X4N N06 C05  DOUB N N 3  
X4N C05 C04  SING N N 4  
X4N C07 C04  SING N N 5  
X4N C08 C07  SING N N 6  
X4N C09 C08  SING N N 7  
X4N C10 C09  SING N N 8  
X4N C11 C10  SING N N 9  
X4N N12 C11  SING N N 10 
X4N C13 N12  SING N N 11 
X4N O14 C13  DOUB N N 12 
X4N N03 C02  SING N N 13 
X4N C15 C02  SING N N 14 
X4N C18 C17  SING N N 15 
X4N C19 C17  SING N N 16 
X4N C17 C16  SING N N 17 
X4N C20 C16  SING N N 18 
X4N C21 C20  SING N N 19 
X4N C16 C15  SING N N 20 
X4N N22 C15  SING N N 21 
X4N C23 N22  SING N N 22 
X4N C26 C25  SING N N 23 
X4N C27 C25  SING N N 24 
X4N C28 C25  SING N N 25 
X4N C25 C24  SING N N 26 
X4N N29 C24  SING N N 27 
X4N C30 N29  SING N N 28 
X4N F32 C31  SING N N 29 
X4N F33 C31  SING N N 30 
X4N F34 C31  SING N N 31 
X4N C31 C30  SING N N 32 
X4N O35 C30  DOUB N N 33 
X4N C24 C23  SING N N 34 
X4N O36 C23  DOUB N N 35 
X4N C08 C13  SING N N 36 
X4N C17 C20  SING N N 37 
X4N C21 N22  SING N N 38 
X4N C10 H101 SING N N 39 
X4N C10 H102 SING N N 40 
X4N N12 H121 SING N N 41 
X4N C15 H151 SING N N 42 
X4N C20 H201 SING N N 43 
X4N C21 H212 SING N N 44 
X4N C21 H211 SING N N 45 
X4N C24 H241 SING N N 46 
X4N C26 H261 SING N N 47 
X4N C26 H263 SING N N 48 
X4N C26 H262 SING N N 49 
X4N C28 H281 SING N N 50 
X4N C28 H283 SING N N 51 
X4N C28 H282 SING N N 52 
X4N C04 H041 SING N N 53 
X4N C05 H051 SING N N 54 
X4N C07 H071 SING N N 55 
X4N C07 H072 SING N N 56 
X4N C08 H081 SING N N 57 
X4N C09 H092 SING N N 58 
X4N C09 H091 SING N N 59 
X4N C11 H111 SING N N 60 
X4N C11 H112 SING N N 61 
X4N C16 H161 SING N N 62 
X4N C18 H183 SING N N 63 
X4N C18 H181 SING N N 64 
X4N C18 H182 SING N N 65 
X4N C19 H192 SING N N 66 
X4N C19 H191 SING N N 67 
X4N C19 H193 SING N N 68 
X4N C27 H273 SING N N 69 
X4N C27 H271 SING N N 70 
X4N C27 H272 SING N N 71 
X4N N03 H031 SING N N 72 
X4N N06 H061 SING N N 73 
X4N N29 H291 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X4N SMILES           ACDLabs              12.01 "CC1(C)C2C(C(=O)NC(C=N)CC3CCCNC3=O)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C"                                                                                                                                                            
X4N InChI            InChI                1.06  "InChI=1S/C24H36F3N5O4/c1-22(2,3)17(31-21(36)24(25,26)27)20(35)32-11-14-15(23(14,4)5)16(32)19(34)30-13(10-28)9-12-7-6-8-29-18(12)33/h10,12-17,28H,6-9,11H2,1-5H3,(H,29,33)(H,30,34)(H,31,36)/b28-10+/t12-,13-,14-,15-,16-,17+/m0/s1" 
X4N InChIKey         InChI                1.06  ANWPXQGZBIGAAL-OMYRVQQUSA-N                                                                                                                                                                                                          
X4N SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCCNC3=O)C=N)C2(C)C"                                                                                                                                   
X4N SMILES           CACTVS               3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCCNC3=O)C=N)C2(C)C"                                                                                                                                            
X4N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/[C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@@H]2[C@@H]3[C@@H](C3(C)C)CN2C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F"                                                                                                                             
X4N SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CC3CCCNC3=O)C=N)C"                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X4N "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopiperidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                                               
X4N "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X4N "Create component" 2023-10-22 RCSB 
X4N "Modify PCM"       2024-09-27 PDBE 
X4N "Initial release"  2024-10-23 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            X4N 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C05 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
