data_X3N
# 
_chem_comp.id                                    X3N 
_chem_comp.name                                  "N~2~-{(4S,11aP)-2-[(4S)-4-(difluoromethyl)-2-oxo-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-alaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H19 F2 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-26 
_chem_comp.pdbx_modified_date                    2022-11-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        407.371 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X3N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EXV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X3N C4  C1  C 0 1 N N N -20.850 16.341 32.111 -7.314 0.790  0.455  C4  X3N 1  
X3N C11 C2  C 0 1 Y N N -16.430 14.169 29.646 -1.036 -0.151 -0.126 C11 X3N 2  
X3N C8  C3  C 0 1 Y N N -17.786 15.743 31.558 -3.787 -0.272 0.115  C8  X3N 3  
X3N C9  C4  C 0 1 Y N N -18.379 14.587 31.026 -3.185 0.844  -0.458 C9  X3N 4  
X3N C10 C5  C 0 1 Y N N -17.721 13.824 30.066 -1.811 0.906  -0.579 C10 X3N 5  
X3N C12 C6  C 0 1 Y N N -15.841 15.367 30.166 -1.639 -1.269 0.485  C12 X3N 6  
X3N C13 C7  C 0 1 Y N N -16.519 16.124 31.108 -3.013 -1.327 0.586  C13 X3N 7  
X3N C1  C8  C 0 1 N N N -20.038 17.033 34.369 -6.246 0.597  -1.775 C1  X3N 8  
X3N C2  C9  C 0 1 N N S -19.741 16.175 33.129 -5.996 0.776  -0.276 C2  X3N 9  
X3N O5  O1  O 0 1 N N N -21.788 15.564 32.124 -7.546 -0.043 1.305  O5  X3N 10 
X3N N6  N1  N 0 1 N N N -20.770 17.316 31.178 -8.234 1.733  0.168  N6  X3N 11 
X3N N7  N2  N 0 1 N N N -18.415 16.519 32.548 -5.176 -0.333 0.218  N7  X3N 12 
X3N O14 O2  O 0 1 N N N -14.623 15.798 29.778 -0.839 -2.231 0.998  O14 X3N 13 
X3N C15 C10 C 0 1 N N N -14.242 15.812 28.406 -0.242 -3.210 0.148  C15 X3N 14 
X3N C16 C11 C 0 1 N N N -13.609 14.463 28.084 0.348  -2.553 -1.103 C16 X3N 15 
X3N N17 N3  N 0 1 Y N N -14.618 13.432 27.896 1.061  -1.329 -0.741 N17 X3N 16 
X3N C18 C12 C 0 1 Y N N -15.818 13.303 28.594 0.431  -0.192 -0.295 C18 X3N 17 
X3N N19 N4  N 0 1 Y N N -16.418 12.258 28.093 1.332  0.724  -0.075 N19 X3N 18 
X3N C20 C13 C 0 1 Y N N -15.692 11.644 27.163 2.549  0.223  -0.354 C20 X3N 19 
X3N C21 C14 C 0 1 Y N N -14.567 12.391 26.993 2.399  -1.060 -0.769 C21 X3N 20 
X3N N22 N5  N 0 1 N N N -16.164 10.485 26.506 3.768  0.911  -0.236 N22 X3N 21 
X3N C23 C15 C 0 1 N N S -17.438 9.825  26.874 5.085  0.394  -0.640 C23 X3N 22 
X3N C25 C16 C 0 1 N N N -17.691 8.822  25.736 6.052  1.542  -0.294 C25 X3N 23 
X3N O26 O3  O 0 1 N N N -16.407 8.780  25.064 5.189  2.575  0.264  O26 X3N 24 
X3N C27 C17 C 0 1 N N N -15.651 9.815  25.448 3.921  2.148  0.257  C27 X3N 25 
X3N O28 O4  O 0 1 N N N -14.616 10.083 24.877 2.993  2.816  0.668  O28 X3N 26 
X3N C29 C18 C 0 1 N N N -17.314 9.116  28.233 5.436  -0.864 0.156  C29 X3N 27 
X3N F30 F1  F 0 1 N N N -18.552 8.602  28.655 6.690  -1.336 -0.245 F30 X3N 28 
X3N F31 F2  F 0 1 N N N -16.344 8.114  28.129 5.468  -0.558 1.521  F31 X3N 29 
X3N H1  H1  H 0 1 N N N -19.359 14.286 31.366 -3.794 1.663  -0.809 H1  X3N 30 
X3N H2  H2  H 0 1 N N N -18.209 12.959 29.642 -1.343 1.772  -1.024 H2  X3N 31 
X3N H4  H3  H 0 1 N N N -16.062 17.021 31.500 -3.487 -2.190 1.031  H4  X3N 32 
X3N H5  H4  H 0 1 N N N -19.229 16.908 35.104 -5.293 0.586  -2.303 H5  X3N 33 
X3N H6  H5  H 0 1 N N N -20.106 18.091 34.075 -6.767 -0.345 -1.946 H6  X3N 34 
X3N H7  H6  H 0 1 N N N -20.992 16.714 34.815 -6.857 1.422  -2.142 H7  X3N 35 
X3N H3  H7  H 0 1 N N N -19.721 15.121 33.445 -5.476 1.718  -0.105 H3  X3N 36 
X3N H8  H8  H 0 1 N N N -21.487 17.406 30.486 -9.080 1.745  0.641  H8  X3N 37 
X3N H9  H9  H 0 1 N N N -19.994 17.947 31.179 -8.049 2.400  -0.512 H9  X3N 38 
X3N H10 H10 H 0 1 N N N -17.778 16.552 33.318 -5.600 -1.109 0.617  H10 X3N 39 
X3N H11 H11 H 0 1 N N N -13.515 16.618 28.228 0.551  -3.722 0.693  H11 X3N 40 
X3N H12 H12 H 0 1 N N N -15.128 15.970 27.773 -0.999 -3.935 -0.150 H12 X3N 41 
X3N H13 H13 H 0 1 N N N -12.949 14.170 28.914 1.039  -3.246 -1.583 H13 X3N 42 
X3N H14 H14 H 0 1 N N N -13.018 14.557 27.161 -0.457 -2.308 -1.796 H14 X3N 43 
X3N H15 H15 H 0 1 N N N -13.778 12.203 26.280 3.186  -1.738 -1.064 H15 X3N 44 
X3N H24 H16 H 0 1 N N N -18.256 10.559 26.911 5.102  0.186  -1.710 H24 X3N 45 
X3N H16 H17 H 0 1 N N N -18.482 9.179  25.060 6.783  1.215  0.446  H16 X3N 46 
X3N H17 H18 H 0 1 N N N -17.965 7.833  26.131 6.554  1.904  -1.191 H17 X3N 47 
X3N H18 H19 H 0 1 N N N -16.974 9.867  28.961 4.684  -1.631 -0.026 H18 X3N 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X3N O28 C27 DOUB N N 1  
X3N O26 C27 SING N N 2  
X3N O26 C25 SING N N 3  
X3N C27 N22 SING N N 4  
X3N C25 C23 SING N N 5  
X3N N22 C23 SING N N 6  
X3N N22 C20 SING N N 7  
X3N C23 C29 SING N N 8  
X3N C21 C20 DOUB Y N 9  
X3N C21 N17 SING Y N 10 
X3N C20 N19 SING Y N 11 
X3N N17 C16 SING N N 12 
X3N N17 C18 SING Y N 13 
X3N C16 C15 SING N N 14 
X3N N19 C18 DOUB Y N 15 
X3N F31 C29 SING N N 16 
X3N C29 F30 SING N N 17 
X3N C15 O14 SING N N 18 
X3N C18 C11 SING N N 19 
X3N C11 C10 DOUB Y N 20 
X3N C11 C12 SING Y N 21 
X3N O14 C12 SING N N 22 
X3N C10 C9  SING Y N 23 
X3N C12 C13 DOUB Y N 24 
X3N C9  C8  DOUB Y N 25 
X3N C13 C8  SING Y N 26 
X3N N6  C4  SING N N 27 
X3N C8  N7  SING N N 28 
X3N C4  O5  DOUB N N 29 
X3N C4  C2  SING N N 30 
X3N N7  C2  SING N N 31 
X3N C2  C1  SING N N 32 
X3N C9  H1  SING N N 33 
X3N C10 H2  SING N N 34 
X3N C13 H4  SING N N 35 
X3N C1  H5  SING N N 36 
X3N C1  H6  SING N N 37 
X3N C1  H7  SING N N 38 
X3N C2  H3  SING N N 39 
X3N N6  H8  SING N N 40 
X3N N6  H9  SING N N 41 
X3N N7  H10 SING N N 42 
X3N C15 H11 SING N N 43 
X3N C15 H12 SING N N 44 
X3N C16 H13 SING N N 45 
X3N C16 H14 SING N N 46 
X3N C21 H15 SING N N 47 
X3N C23 H24 SING N N 48 
X3N C25 H16 SING N N 49 
X3N C25 H17 SING N N 50 
X3N C29 H18 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X3N SMILES           ACDLabs              12.01 "FC(F)C1COC(=O)N1c1nc2c3ccc(NC(C)C(N)=O)cc3OCCn2c1"                                                                                                                          
X3N InChI            InChI                1.06  "InChI=1S/C18H19F2N5O4/c1-9(16(21)26)22-10-2-3-11-13(6-10)28-5-4-24-7-14(23-17(11)24)25-12(15(19)20)8-29-18(25)27/h2-3,6-7,9,12,15,22H,4-5,8H2,1H3,(H2,21,26)/t9-,12-/m0/s1" 
X3N InChIKey         InChI                1.06  SGEUNORSOZVTOL-CABZTGNLSA-N                                                                                                                                                  
X3N SMILES_CANONICAL CACTVS               3.385 "C[C@H](Nc1ccc2c(OCCn3cc(nc23)N4[C@@H](COC4=O)C(F)F)c1)C(N)=O"                                                                                                               
X3N SMILES           CACTVS               3.385 "C[CH](Nc1ccc2c(OCCn3cc(nc23)N4[CH](COC4=O)C(F)F)c1)C(N)=O"                                                                                                                  
X3N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)N)Nc1ccc-2c(c1)OCCn3c2nc(c3)N4[C@@H](COC4=O)C(F)F"                                                                                                             
X3N SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)N)Nc1ccc-2c(c1)OCCn3c2nc(c3)N4C(COC4=O)C(F)F"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X3N "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-{(4S,11aP)-2-[(4S)-4-(difluoromethyl)-2-oxo-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-alaninamide"                   
X3N "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[2-[(4~{S})-4-[bis(fluoranyl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl]amino]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X3N "Create component" 2022-10-26 RCSB 
X3N "Initial release"  2022-11-30 RCSB 
# 
