data_WVN
# 
_chem_comp.id                                    WVN 
_chem_comp.name                                  "1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C40 H56" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ALPHA-CAROTENE 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-17 
_chem_comp.pdbx_modified_date                    2024-06-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        536.873 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WVN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WM6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WVN C10  C1  C 0 1 N N N N N N 174.525 206.104 141.215 -13.875 0.038  0.500  C10  WVN 1  
WVN C11  C2  C 0 1 N N N N N N 159.900 210.128 123.958 10.133  -0.064 0.196  C11  WVN 2  
WVN C12  C3  C 0 1 N N N N N N 175.779 206.955 141.375 -13.727 -1.390 1.039  C12  WVN 3  
WVN C13  C4  C 0 1 N N N N N N 174.786 206.249 138.750 -11.464 -0.154 -0.069 C13  WVN 4  
WVN C14  C5  C 0 1 N N N N N N 176.218 207.736 140.139 -12.882 -2.198 0.052  C14  WVN 5  
WVN C01  C6  C 0 1 N N N N N N 158.224 210.565 122.145 12.250  -0.692 -0.930 C01  WVN 6  
WVN C02  C7  C 0 1 N N R N N N 159.388 209.699 122.583 11.448  0.461  -0.321 C02  WVN 7  
WVN C03  C8  C 0 1 N N N N N N 157.170 210.559 123.246 12.726  -1.606 0.205  C03  WVN 8  
WVN C04  C9  C 0 1 N N N N N N 156.705 209.141 123.578 13.751  -0.840 1.045  C04  WVN 9  
WVN C05  C10 C 0 1 N N N N N N 158.854 208.283 122.685 12.215  1.081  0.810  C05  WVN 10 
WVN C06  C11 C 0 1 N N N N N N 174.555 205.316 139.915 -12.509 0.723  0.558  C06  WVN 11 
WVN C07  C12 C 0 1 N N N N N N 158.693 211.981 121.863 11.360  -1.485 -1.890 C07  WVN 12 
WVN C08  C13 C 0 1 N N N N N N 157.634 209.971 120.875 13.459  -0.135 -1.684 C08  WVN 13 
WVN C09  C14 C 0 1 N N N N N N 157.795 208.076 123.420 13.214  0.514  1.407  C09  WVN 14 
WVN C15  C15 C 0 1 N N N N N N 175.632 207.255 138.817 -11.628 -1.447 -0.289 C15  WVN 15 
WVN C16  C16 C 0 1 N N N N N N 159.300 207.204 121.701 11.797  2.451  1.280  C16  WVN 16 
WVN C17  C17 C 0 1 N N N N N N 173.210 204.644 139.708 -12.137 0.992  2.017  C17  WVN 17 
WVN C18  C18 C 0 1 N N N N N N 175.634 204.249 140.002 -12.575 2.052  -0.199 C18  WVN 18 
WVN C19  C19 C 0 1 N N N N N N 161.100 209.739 124.330 8.985   0.416  -0.292 C19  WVN 19 
WVN C20  C20 C 0 1 N N N N N N 173.784 206.152 137.619 -10.232 0.438  -0.445 C20  WVN 20 
WVN C21  C21 C 0 1 N N N N N N 175.913 208.086 137.568 -10.491 -2.211 -0.918 C21  WVN 21 
WVN C22  C22 C 0 1 N N N N N N 161.757 210.059 125.660 7.748   -0.078 0.193  C22  WVN 22 
WVN C23  C23 C 0 1 N N N N N N 174.112 205.397 136.623 -9.064  -0.049 0.051  C23  WVN 23 
WVN C24  C24 C 0 1 N N N N N N 161.146 211.057 126.629 7.727   -1.142 1.260  C24  WVN 24 
WVN C25  C25 C 0 1 N N N N N N 173.211 205.194 135.441 -7.838  0.440  -0.431 C25  WVN 25 
WVN C26  C26 C 0 1 N N N N N N 162.878 209.429 125.926 6.580   0.410  -0.303 C26  WVN 26 
WVN C27  C27 C 0 1 N N N N N N 173.237 203.832 134.784 -7.817  1.504  -1.497 C27  WVN 27 
WVN C28  C28 C 0 1 N N N N N N 172.433 206.144 135.008 -6.665  -0.050 0.068  C28  WVN 28 
WVN C29  C29 C 0 1 N N N N N N 163.694 209.599 127.199 5.353   -0.079 0.179  C29  WVN 29 
WVN C30  C30 C 0 1 N N N N N N 171.571 205.853 133.799 -5.441  0.438  -0.412 C30  WVN 30 
WVN C31  C31 C 0 1 N N N N N N 164.623 208.725 127.474 4.181   0.410  -0.320 C31  WVN 31 
WVN C32  C32 C 0 1 N N N N N N 165.476 208.843 128.730 2.957   -0.077 0.161  C32  WVN 32 
WVN C33  C33 C 0 1 N N N N N N 170.820 206.779 133.271 -4.259  -0.056 0.090  C33  WVN 33 
WVN C34  C34 C 0 1 N N N N N N 169.989 206.472 132.041 -3.037  0.431  -0.389 C34  WVN 34 
WVN C35  C35 C 0 1 N N N N N N 165.078 209.851 129.806 2.937   -1.142 1.227  C35  WVN 35 
WVN C36  C36 C 0 1 N N N N N N 166.526 208.054 128.868 1.774   0.417  -0.342 C36  WVN 36 
WVN C37  C37 C 0 1 N N N N N N 169.040 207.300 131.707 -1.853  -0.063 0.114  C37  WVN 37 
WVN C38  C38 C 0 1 N N N N N N 170.276 205.243 131.199 -3.016  1.496  -1.456 C38  WVN 38 
WVN C39  C39 C 0 1 N N N N N N 167.433 208.109 130.087 0.553   -0.070 0.137  C39  WVN 39 
WVN C40  C40 C 0 1 N N N N N N 168.165 207.100 130.479 -0.631  0.424  -0.366 C40  WVN 40 
WVN H101 H1  H 0 0 N N N N N N 173.643 206.762 141.215 -14.225 0.005  -0.532 H101 WVN 41 
WVN H102 H2  H 0 0 N N N N N N 174.459 205.401 142.059 -14.590 0.588  1.112  H102 WVN 42 
WVN H111 H3  H 0 0 N N N N N N 159.290 210.737 124.609 10.119  -0.827 0.960  H111 WVN 43 
WVN H121 H4  H 0 0 N N N N N N 175.594 207.679 142.183 -13.232 -1.365 2.010  H121 WVN 44 
WVN H122 H5  H 0 0 N N N N N N 176.605 206.287 141.663 -14.712 -1.848 1.139  H122 WVN 45 
WVN H142 H6  H 0 0 N N N N N N 175.922 208.786 140.279 -12.620 -3.156 0.500  H142 WVN 46 
WVN H141 H7  H 0 0 N N N N N N 177.314 207.670 140.068 -13.458 -2.372 -0.858 H141 WVN 47 
WVN H021 H8  H 0 0 N N N N N N 160.201 209.748 121.843 11.260  1.214  -1.085 H021 WVN 48 
WVN H031 H9  H 0 0 N N N N N N 157.598 211.015 124.151 11.878  -1.888 0.829  H031 WVN 49 
WVN H032 H10 H 0 0 N N N N N N 156.304 211.149 122.913 13.190  -2.499 -0.213 H032 WVN 50 
WVN H041 H11 H 0 0 N N N N N N 156.356 209.127 124.621 13.962  -1.400 1.956  H041 WVN 51 
WVN H042 H12 H 0 0 N N N N N N 155.871 208.885 122.908 14.671  -0.723 0.474  H042 WVN 52 
WVN H073 H13 H 0 0 N N N N N N 157.837 212.595 121.547 11.008  -0.828 -2.686 H073 WVN 53 
WVN H071 H14 H 0 0 N N N N N N 159.134 212.409 122.775 11.934  -2.305 -2.323 H071 WVN 54 
WVN H072 H15 H 0 0 N N N N N N 159.448 211.965 121.063 10.506  -1.887 -1.346 H072 WVN 55 
WVN H081 H16 H 0 0 N N N N N N 156.786 210.587 120.541 14.093  0.421  -0.994 H081 WVN 56 
WVN H083 H17 H 0 0 N N N N N N 158.403 209.949 120.089 14.028  -0.958 -2.117 H083 WVN 57 
WVN H082 H18 H 0 0 N N N N N N 157.286 208.947 121.076 13.118  0.529  -2.479 H082 WVN 58 
WVN H091 H19 H 0 0 N N N N N N 157.685 207.130 123.929 13.690  1.048  2.216  H091 WVN 59 
WVN H163 H20 H 0 0 N N N N N N 158.801 206.255 121.946 11.049  2.352  2.067  H163 WVN 60 
WVN H161 H21 H 0 0 N N N N N N 159.031 207.507 120.678 12.665  2.983  1.669  H161 WVN 61 
WVN H162 H22 H 0 0 N N N N N N 160.390 207.073 121.770 11.373  3.008  0.444  H162 WVN 62 
WVN H173 H23 H 0 0 N N N N N N 173.226 204.072 138.768 -12.094 0.048  2.561  H173 WVN 63 
WVN H172 H24 H 0 0 N N N N N N 173.007 203.963 140.548 -11.164 1.481  2.060  H172 WVN 64 
WVN H171 H25 H 0 0 N N N N N N 172.422 205.410 139.658 -12.889 1.639  2.470  H171 WVN 65 
WVN H183 H26 H 0 0 N N N N N N 175.660 203.676 139.064 -13.285 2.716  0.295  H183 WVN 66 
WVN H181 H27 H 0 0 N N N N N N 176.611 204.728 140.166 -11.589 2.516  -0.206 H181 WVN 67 
WVN H182 H28 H 0 0 N N N N N N 175.413 203.571 140.840 -12.900 1.871  -1.223 H182 WVN 68 
WVN H191 H29 H 0 0 N N N N N N 161.665 209.142 123.630 9.000   1.179  -1.057 H191 WVN 69 
WVN H201 H30 H 0 0 N N N N N N 172.845 206.685 137.643 -10.221 1.276  -1.126 H201 WVN 70 
WVN H211 H31 H 0 0 N N N N N N 176.638 208.877 137.809 -9.826  -2.580 -0.138 H211 WVN 71 
WVN H213 H32 H 0 0 N N N N N N 176.326 207.437 136.781 -10.889 -3.053 -1.485 H213 WVN 72 
WVN H212 H33 H 0 0 N N N N N N 174.977 208.543 137.213 -9.937  -1.553 -1.587 H212 WVN 73 
WVN H231 H34 H 0 0 N N N N N N 175.068 204.895 136.642 -9.079  -0.812 0.815  H231 WVN 74 
WVN H241 H35 H 0 0 N N N N N N 161.781 211.136 127.523 7.718   -0.671 2.243  H241 WVN 75 
WVN H243 H36 H 0 0 N N N N N N 161.072 212.041 126.143 6.835   -1.757 1.142  H243 WVN 76 
WVN H242 H37 H 0 0 N N N N N N 160.142 210.716 126.922 8.615   -1.768 1.166  H242 WVN 77 
WVN H261 H38 H 0 0 N N N N N N 163.249 208.737 125.184 6.595   1.173  -1.067 H261 WVN 78 
WVN H273 H39 H 0 0 N N N N N N 172.535 203.819 133.937 -7.817  2.488  -1.028 H273 WVN 79 
WVN H272 H40 H 0 0 N N N N N N 174.253 203.619 134.421 -6.920  1.392  -2.106 H272 WVN 80 
WVN H271 H41 H 0 0 N N N N N N 172.941 203.066 135.516 -8.699  1.403  -2.129 H271 WVN 81 
WVN H281 H42 H 0 0 N N N N N N 172.404 207.107 135.495 -6.680  -0.813 0.832  H281 WVN 82 
WVN H291 H43 H 0 0 N N N N N N 163.507 210.429 127.864 5.339   -0.842 0.943  H291 WVN 83 
WVN H301 H44 H 0 0 N N N N N N 171.578 204.863 133.367 -5.427  1.201  -1.177 H301 WVN 84 
WVN H311 H45 H 0 0 N N N N N N 164.791 207.901 126.797 4.195   1.173  -1.084 H311 WVN 85 
WVN H331 H46 H 0 0 N N N N N N 170.790 207.765 133.710 -4.273  -0.819 0.855  H331 WVN 86 
WVN H351 H47 H 0 0 N N N N N N 165.797 209.804 130.637 2.927   -0.671 2.210  H351 WVN 87 
WVN H353 H48 H 0 0 N N N N N N 165.078 210.864 129.377 2.045   -1.757 1.110  H353 WVN 88 
WVN H352 H49 H 0 0 N N N N N N 164.071 209.611 130.179 3.824   -1.768 1.133  H352 WVN 89 
WVN H361 H50 H 0 0 N N N N N N 166.749 207.343 128.086 1.789   1.179  -1.107 H361 WVN 90 
WVN H371 H51 H 0 0 N N N N N N 168.867 208.166 132.329 -1.867  -0.826 0.878  H371 WVN 91 
WVN H383 H52 H 0 0 N N N N N N 169.568 205.200 130.358 -3.016  2.480  -0.987 H383 WVN 92 
WVN H382 H53 H 0 0 N N N N N N 171.304 205.297 130.810 -2.119  1.383  -2.064 H382 WVN 93 
WVN H381 H54 H 0 0 N N N N N N 170.165 204.341 131.818 -3.899  1.394  -2.088 H381 WVN 94 
WVN H391 H55 H 0 0 N N N N N N 167.474 209.026 130.656 0.538   -0.833 0.902  H391 WVN 95 
WVN H401 H56 H 0 0 N N N N N N 168.149 206.158 129.950 -0.617  1.187  -1.130 H401 WVN 96 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WVN C01 C02  SING N N 1  
WVN C01 C03  SING N N 2  
WVN C01 C07  SING N N 3  
WVN C01 C08  SING N N 4  
WVN C02 C05  SING N N 5  
WVN C02 C11  SING N N 6  
WVN C03 C04  SING N N 7  
WVN C04 C09  SING N N 8  
WVN C05 C09  DOUB N N 9  
WVN C05 C16  SING N N 10 
WVN C06 C10  SING N N 11 
WVN C06 C13  SING N N 12 
WVN C06 C17  SING N N 13 
WVN C06 C18  SING N N 14 
WVN C10 C12  SING N N 15 
WVN C11 C19  DOUB N E 16 
WVN C12 C14  SING N N 17 
WVN C13 C15  DOUB N N 18 
WVN C13 C20  SING N N 19 
WVN C14 C15  SING N N 20 
WVN C15 C21  SING N N 21 
WVN C19 C22  SING N N 22 
WVN C20 C23  DOUB N E 23 
WVN C22 C24  SING N N 24 
WVN C22 C26  DOUB N E 25 
WVN C23 C25  SING N N 26 
WVN C25 C27  SING N N 27 
WVN C25 C28  DOUB N E 28 
WVN C26 C29  SING N N 29 
WVN C28 C30  SING N N 30 
WVN C29 C31  DOUB N E 31 
WVN C30 C33  DOUB N E 32 
WVN C31 C32  SING N N 33 
WVN C32 C35  SING N N 34 
WVN C32 C36  DOUB N E 35 
WVN C33 C34  SING N N 36 
WVN C34 C37  DOUB N E 37 
WVN C34 C38  SING N N 38 
WVN C36 C39  SING N N 39 
WVN C37 C40  SING N N 40 
WVN C39 C40  DOUB N E 41 
WVN C10 H101 SING N N 42 
WVN C10 H102 SING N N 43 
WVN C11 H111 SING N N 44 
WVN C12 H121 SING N N 45 
WVN C12 H122 SING N N 46 
WVN C14 H142 SING N N 47 
WVN C14 H141 SING N N 48 
WVN C02 H021 SING N N 49 
WVN C03 H031 SING N N 50 
WVN C03 H032 SING N N 51 
WVN C04 H041 SING N N 52 
WVN C04 H042 SING N N 53 
WVN C07 H073 SING N N 54 
WVN C07 H071 SING N N 55 
WVN C07 H072 SING N N 56 
WVN C08 H081 SING N N 57 
WVN C08 H083 SING N N 58 
WVN C08 H082 SING N N 59 
WVN C09 H091 SING N N 60 
WVN C16 H163 SING N N 61 
WVN C16 H161 SING N N 62 
WVN C16 H162 SING N N 63 
WVN C17 H173 SING N N 64 
WVN C17 H172 SING N N 65 
WVN C17 H171 SING N N 66 
WVN C18 H183 SING N N 67 
WVN C18 H181 SING N N 68 
WVN C18 H182 SING N N 69 
WVN C19 H191 SING N N 70 
WVN C20 H201 SING N N 71 
WVN C21 H211 SING N N 72 
WVN C21 H213 SING N N 73 
WVN C21 H212 SING N N 74 
WVN C23 H231 SING N N 75 
WVN C24 H241 SING N N 76 
WVN C24 H243 SING N N 77 
WVN C24 H242 SING N N 78 
WVN C26 H261 SING N N 79 
WVN C27 H273 SING N N 80 
WVN C27 H272 SING N N 81 
WVN C27 H271 SING N N 82 
WVN C28 H281 SING N N 83 
WVN C29 H291 SING N N 84 
WVN C30 H301 SING N N 85 
WVN C31 H311 SING N N 86 
WVN C33 H331 SING N N 87 
WVN C35 H351 SING N N 88 
WVN C35 H353 SING N N 89 
WVN C35 H352 SING N N 90 
WVN C36 H361 SING N N 91 
WVN C37 H371 SING N N 92 
WVN C38 H383 SING N N 93 
WVN C38 H382 SING N N 94 
WVN C38 H381 SING N N 95 
WVN C39 H391 SING N N 96 
WVN C40 H401 SING N N 97 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WVN InChI            InChI                1.06  "InChI=1S/C40H56/c1-31(19-13-21-33(3)25-27-37-35(5)23-15-29-39(37,7)8)17-11-12-18-32(2)20-14-22-34(4)26-28-38-36(6)24-16-30-40(38,9)10/h11-14,17-23,25-28,37H,15-16,24,29-30H2,1-10H3/b12-11+,19-13+,20-14+,27-25+,28-26+,31-17+,32-18+,33-21+,34-22+/t37-/m0/s1" 
WVN InChIKey         InChI                1.06  ANVAOWXLWRTKGA-NTXLUARGSA-N                                                                                                                                                                                                                                       
WVN SMILES_CANONICAL CACTVS               3.385 "CC(=C\C=C\C=C(C)\C=C\C=C(C)\C=C\C1=C(C)CCCC1(C)C)/C=C/C=C(C)/C=C/[C@H]2C(=CCCC2(C)C)C"                                                                                                                                                                           
WVN SMILES           CACTVS               3.385 "CC(=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)CCCC1(C)C)C=CC=C(C)C=C[CH]2C(=CCCC2(C)C)C"                                                                                                                                                                                      
WVN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/[C@H]2C(=CCCC2(C)C)C)/C)/C"                                                                                                                                                                     
WVN SMILES           "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2C(=CCCC2(C)C)C)C)C"                                                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           WVN 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1,3,3-trimethyl-2-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R})-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      WVN 
_pdbx_chem_comp_synonyms.name         ALPHA-CAROTENE 
_pdbx_chem_comp_synonyms.provenance   PUBCHEM 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WVN "Create component"  2023-10-17 PDBJ 
WVN "Initial release"   2024-05-29 RCSB 
WVN "Modify descriptor" 2024-06-19 PDBJ 
# 
