data_WBN
# 
_chem_comp.id                                    WBN 
_chem_comp.name                                  "(3~{R},5~{R})-~{N}-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-5-oxidanyl-2-oxidanylidene-1-pyridin-2-yl-piperidine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H22 N4 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-10 
_chem_comp.pdbx_modified_date                    2023-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.500 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WBN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P0F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WBN N3   N1  N 0 1 Y N N -0.639 -27.219 34.112 -7.472 -1.278 0.149  N3   WBN 1  
WBN C4   C1  C 0 1 Y N N 0.449  -27.004 34.782 -7.502 -1.381 -1.138 C4   WBN 2  
WBN C6   C2  C 0 1 Y N N -1.438 -27.089 36.289 -5.498 -0.289 -0.214 C6   WBN 3  
WBN C7   C3  C 0 1 Y N N -2.330 -27.029 37.473 -4.220 0.388  0.096  C7   WBN 4  
WBN C8   C4  C 0 1 Y N N -3.382 -27.925 37.621 -3.384 -0.116 1.092  C8   WBN 5  
WBN C10  C5  C 0 1 Y N N -4.072 -26.860 39.675 -1.829 1.657  0.678  C10  WBN 6  
WBN N12  N2  N 0 1 N N N -4.444 -26.260 42.068 0.538  1.788  0.159  N12  WBN 7  
WBN C13  C6  C 0 1 N N N -3.728 -27.046 42.877 1.798  2.256  0.270  C13  WBN 8  
WBN C15  C7  C 0 1 N N R -2.937 -26.387 43.992 2.894  1.680  -0.589 C15  WBN 9  
WBN C17  C8  C 0 1 N N R -1.555 -24.514 45.031 5.353  1.615  -0.945 C17  WBN 10 
WBN C21  C9  C 0 1 N N N -3.611 -26.553 45.338 3.026  0.210  -0.311 C21  WBN 11 
WBN C26  C10 C 0 1 Y N N -2.669 -28.252 49.929 4.160  -4.476 0.470  C26  WBN 12 
WBN C28  C11 C 0 1 Y N N -3.055 -28.279 47.565 4.256  -2.655 -1.062 C28  WBN 13 
WBN C1   C12 C 0 1 N N N -3.077 -27.469 34.352 -6.253 -0.514 2.170  C1   WBN 14 
WBN C2   C13 C 0 1 Y N N -1.731 -27.254 34.956 -6.419 -0.701 0.683  C2   WBN 15 
WBN S5   S1  S 0 1 Y N N 0.269  -26.848 36.483 -6.090 -0.703 -1.822 S5   WBN 16 
WBN C9   C14 C 0 1 Y N N -4.238 -27.839 38.705 -2.193 0.520  1.377  C9   WBN 17 
WBN C11  C15 C 0 1 N N N -5.037 -26.756 40.833 -0.527 2.348  0.994  C11  WBN 18 
WBN O14  O1  O 0 1 N N N -3.724 -28.267 42.737 2.048  3.140  1.062  O14  WBN 19 
WBN C16  C16 C 0 1 N N N -2.453 -24.927 43.870 4.213  2.390  -0.274 C16  WBN 20 
WBN O18  O2  O 0 1 N N N -1.297 -23.103 44.977 6.574  2.345  -0.814 O18  WBN 21 
WBN C19  C17 C 0 1 N N N -2.220 -24.806 46.365 5.491  0.255  -0.259 C19  WBN 22 
WBN N20  N3  N 0 1 N N N -2.827 -26.136 46.364 4.198  -0.413 -0.187 N20  WBN 23 
WBN O22  O3  O 0 1 N N N -4.790 -26.823 45.472 2.012  -0.445 -0.193 O22  WBN 24 
WBN C23  C18 C 0 1 Y N N -2.711 -26.925 47.540 4.186  -1.791 0.024  C23  WBN 25 
WBN N24  N4  N 0 1 Y N N -2.531 -26.215 48.681 4.113  -2.264 1.258  N24  WBN 26 
WBN C25  C19 C 0 1 Y N N -2.496 -26.892 49.839 4.099  -3.561 1.503  C25  WBN 27 
WBN C27  C20 C 0 1 Y N N -2.933 -28.950 48.769 4.243  -4.021 -0.838 C27  WBN 28 
WBN C29  C21 C 0 1 Y N N -3.027 -25.958 39.521 -2.651 2.159  -0.315 C29  WBN 29 
WBN C30  C22 C 0 1 Y N N -2.157 -26.050 38.447 -3.844 1.532  -0.610 C30  WBN 30 
WBN H4   H1  H 0 1 N N N 1.412  -26.927 34.299 -8.305 -1.832 -1.702 H4   WBN 31 
WBN H8   H2  H 0 1 N N N -3.533 -28.697 36.881 -3.667 -1.003 1.639  H8   WBN 32 
WBN H12  H3  H 0 1 N N N -4.577 -25.301 42.318 0.338  1.081  -0.474 H12  WBN 33 
WBN H15  H4  H 0 1 N N N -2.012 -26.978 44.066 2.646  1.829  -1.640 H15  WBN 34 
WBN H17  H5  H 0 1 N N N -0.611 -25.075 44.970 5.125  1.470  -2.001 H17  WBN 35 
WBN H26  H6  H 0 1 N N N -2.600 -28.759 50.880 4.147  -5.536 0.680  H26  WBN 36 
WBN H28  H7  H 0 1 N N N -3.404 -28.784 46.676 4.319  -2.266 -2.068 H28  WBN 37 
WBN H1C  H8  H 0 1 N N N -2.978 -27.572 33.261 -5.661 -1.334 2.575  H1C  WBN 38 
WBN H1A  H9  H 0 1 N N N -3.523 -28.385 34.767 -5.745 0.431  2.363  H1A  WBN 39 
WBN H1B  H10 H 0 1 N N N -3.723 -26.609 34.582 -7.234 -0.503 2.646  H1B  WBN 40 
WBN H9   H11 H 0 1 N N N -5.049 -28.546 38.798 -1.544 0.131  2.148  H9   WBN 41 
WBN H11A H12 H 0 0 N N N -5.850 -26.074 40.543 -0.624 3.415  0.794  H11A WBN 42 
WBN H11B H13 H 0 0 N N N -5.450 -27.757 41.027 -0.282 2.197  2.046  H11B WBN 43 
WBN H16A H14 H 0 0 N N N -1.889 -24.819 42.932 4.183  3.409  -0.661 H16A WBN 44 
WBN H16B H15 H 0 0 N N N -3.331 -24.264 43.849 4.369  2.412  0.805  H16B WBN 45 
WBN H18  H16 H 0 1 N N N -0.737 -22.855 45.703 7.340  1.904  -1.207 H18  WBN 46 
WBN H19A H17 H 0 0 N N N -1.465 -24.755 47.163 6.187  -0.365 -0.824 H19A WBN 47 
WBN H19B H18 H 0 0 N N N -3.001 -24.054 46.551 5.875  0.399  0.751  H19B WBN 48 
WBN H25  H19 H 0 1 N N N -2.322 -26.338 50.750 4.038  -3.910 2.523  H25  WBN 49 
WBN H27  H20 H 0 1 N N N -3.045 -30.024 48.801 4.297  -4.716 -1.662 H27  WBN 50 
WBN H29  H21 H 0 1 N N N -2.891 -25.173 40.250 -2.359 3.044  -0.861 H29  WBN 51 
WBN H30  H22 H 0 1 N N N -1.335 -25.354 38.365 -4.485 1.924  -1.385 H30  WBN 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WBN N3  C4   DOUB Y N 1  
WBN N3  C2   SING Y N 2  
WBN C1  C2   SING N N 3  
WBN C4  S5   SING Y N 4  
WBN C2  C6   DOUB Y N 5  
WBN C6  S5   SING Y N 6  
WBN C6  C7   SING N N 7  
WBN C7  C8   DOUB Y N 8  
WBN C7  C30  SING Y N 9  
WBN C8  C9   SING Y N 10 
WBN C30 C29  DOUB Y N 11 
WBN C9  C10  DOUB Y N 12 
WBN C29 C10  SING Y N 13 
WBN C10 C11  SING N N 14 
WBN C11 N12  SING N N 15 
WBN N12 C13  SING N N 16 
WBN O14 C13  DOUB N N 17 
WBN C13 C15  SING N N 18 
WBN C16 C15  SING N N 19 
WBN C16 C17  SING N N 20 
WBN C15 C21  SING N N 21 
WBN O18 C17  SING N N 22 
WBN C17 C19  SING N N 23 
WBN C21 O22  DOUB N N 24 
WBN C21 N20  SING N N 25 
WBN N20 C19  SING N N 26 
WBN N20 C23  SING N N 27 
WBN C23 C28  DOUB Y N 28 
WBN C23 N24  SING Y N 29 
WBN C28 C27  SING Y N 30 
WBN N24 C25  DOUB Y N 31 
WBN C27 C26  DOUB Y N 32 
WBN C25 C26  SING Y N 33 
WBN C4  H4   SING N N 34 
WBN C8  H8   SING N N 35 
WBN N12 H12  SING N N 36 
WBN C15 H15  SING N N 37 
WBN C17 H17  SING N N 38 
WBN C26 H26  SING N N 39 
WBN C28 H28  SING N N 40 
WBN C1  H1C  SING N N 41 
WBN C1  H1A  SING N N 42 
WBN C1  H1B  SING N N 43 
WBN C9  H9   SING N N 44 
WBN C11 H11A SING N N 45 
WBN C11 H11B SING N N 46 
WBN C16 H16A SING N N 47 
WBN C16 H16B SING N N 48 
WBN O18 H18  SING N N 49 
WBN C19 H19A SING N N 50 
WBN C19 H19B SING N N 51 
WBN C25 H25  SING N N 52 
WBN C27 H27  SING N N 53 
WBN C29 H29  SING N N 54 
WBN C30 H30  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WBN InChI            InChI                1.06  "InChI=1S/C22H22N4O3S/c1-14-20(30-13-25-14)16-7-5-15(6-8-16)11-24-21(28)18-10-17(27)12-26(22(18)29)19-4-2-3-9-23-19/h2-9,13,17-18,27H,10-12H2,1H3,(H,24,28)/t17-,18-/m1/s1" 
WBN InChIKey         InChI                1.06  LCYOGYSKPSKGLU-QZTJIDSGSA-N                                                                                                                                                 
WBN SMILES_CANONICAL CACTVS               3.385 "Cc1ncsc1c2ccc(CNC(=O)[C@H]3C[C@@H](O)CN(C3=O)c4ccccn4)cc2"                                                                                                                 
WBN SMILES           CACTVS               3.385 "Cc1ncsc1c2ccc(CNC(=O)[CH]3C[CH](O)CN(C3=O)c4ccccn4)cc2"                                                                                                                    
WBN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)CNC(=O)[C@H]3C[C@H](CN(C3=O)c4ccccn4)O"                                                                                                                
WBN SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)CNC(=O)C3CC(CN(C3=O)c4ccccn4)O"                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           WBN 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{R},5~{R})-~{N}-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-5-oxidanyl-2-oxidanylidene-1-pyridin-2-yl-piperidine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WBN "Create component" 2023-05-10 PDBE 
WBN "Initial release"  2023-05-31 RCSB 
# 
