data_W5N
# 
_chem_comp.id                                    W5N 
_chem_comp.name                                  "[(1~{R},2~{S},3~{S},4~{R})-2-methoxy-4-methyl-3-[(2~{R},3~{S})-2-methyl-3-(3-methylbut-2-enyl)oxiran-2-yl]-4-oxidanyl-cyclohexyl] ~{N}-(4-azanylcyclohexyl)carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H40 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(3R,4S,5S,6R)-5-methoxy-4-[(2R,3R)-2-methyl-3-(3-methyl-2-buten-1-yl)-2-oxiranyl]-1-oxaspiro[2.5]oct-6-yl N-(trans-4-aminocyclohexyl)carbamate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        424.574 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W5N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OXG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W5N O3  O1  O 0 1 N N N N N N -30.007 22.517 -3.177 3.279  3.023  -0.904 O3  W5N 1  
W5N O5  O2  O 0 1 N N N N N N -29.436 22.120 3.054  -2.461 2.030  0.345  O5  W5N 2  
W5N C3  C1  C 0 1 N N S N N N -29.143 20.937 -1.531 2.316  0.946  -0.130 C3  W5N 3  
W5N C4  C2  C 0 1 N N R N N N -27.878 20.543 -2.368 3.661  0.518  0.461  C4  W5N 4  
W5N C5  C3  C 0 1 N N N N N N -26.969 21.631 -2.870 4.762  1.580  0.444  C5  W5N 5  
W5N C6  C4  C 0 1 N N S N N N -27.000 19.540 -3.025 4.077  -0.945 0.298  C6  W5N 6  
W5N C7  C5  C 0 1 N N N N N N -27.265 18.473 -3.995 3.121  -1.880 -0.445 C7  W5N 7  
W5N C2  C6  C 0 1 N N S N N N -28.775 22.020 -0.518 1.507  1.693  0.933  C2  W5N 8  
W5N N1  N1  N 0 1 N N N N N N -30.029 19.910 2.885  -2.660 -0.041 -0.431 N1  W5N 9  
W5N C1  C7  C 0 1 N N N N N N -26.796 22.754 0.576  1.075  1.527  3.284  C1  W5N 10 
W5N O1  O3  O 0 1 N N N N N N -27.641 21.645 0.256  1.283  0.834  2.052  O1  W5N 11 
W5N O2  O4  O 0 1 N N N N N N -27.277 19.418 -1.638 3.645  -0.408 1.549  O2  W5N 12 
W5N C8  C8  C 0 1 N N N N N N -27.923 18.929 -5.253 3.762  -3.235 -0.599 C8  W5N 13 
W5N C9  C9  C 0 1 N N N N N N -28.907 18.253 -5.806 3.122  -4.311 -0.212 C9  W5N 14 
W5N C10 C10 C 0 1 N N N N N N -29.784 18.750 -6.904 3.826  -5.643 -0.201 C10 W5N 15 
W5N C11 C11 C 0 1 N N N N N N -29.298 16.888 -5.315 1.683  -4.215 0.224  C11 W5N 16 
W5N C12 C12 C 0 1 N N R N N N -30.359 21.401 -2.365 2.555  1.866  -1.329 C12 W5N 17 
W5N C13 C13 C 0 1 N N N N N N -30.687 20.374 -3.425 3.364  1.120  -2.391 C13 W5N 18 
W5N C14 C14 C 0 1 N N N N N N -31.552 21.780 -1.473 1.211  2.295  -1.919 C14 W5N 19 
W5N C15 C15 C 0 1 N N N N N N -31.155 22.828 -0.413 0.401  3.041  -0.857 C15 W5N 20 
W5N C16 C16 C 0 1 N N R N N N -29.934 22.378 0.394  0.162  2.121  0.342  C16 W5N 21 
W5N O4  O5  O 0 1 N N N N N N -30.325 21.216 1.158  -0.573 0.946  -0.089 O4  W5N 22 
W5N C17 C17 C 0 1 N N N N N N -29.872 21.161 2.440  -1.917 1.015  -0.044 C17 W5N 23 
W5N C18 C18 C 0 1 N N N N N N -29.718 19.513 4.246  -4.122 0.035  -0.382 C18 W5N 24 
W5N C19 C19 C 0 1 N N N N N N -30.842 18.681 4.814  -4.718 -0.947 -1.393 C19 W5N 25 
W5N C20 C20 C 0 1 N N N N N N -30.463 18.158 6.207  -6.245 -0.868 -1.342 C20 W5N 26 
W5N C21 C21 C 0 1 N N N N N N -29.114 17.434 6.208  -6.727 -1.229 0.064  C21 W5N 27 
W5N N2  N2  N 0 1 N N N N N N -28.750 17.000 7.603  -8.194 -1.153 0.113  N2  W5N 28 
W5N C22 C22 C 0 1 N N N N N N -28.006 18.316 5.657  -6.132 -0.248 1.076  C22 W5N 29 
W5N C23 C23 C 0 1 N N N N N N -28.368 18.785 4.238  -4.605 -0.327 1.025  C23 W5N 30 
W5N H22 H1  H 0 1 N N N N N N -29.773 23.252 -2.622 3.467  3.652  -1.614 H22 W5N 31 
W5N H5  H2  H 0 1 N N N N N N -29.451 20.044 -0.967 1.764  0.064  -0.454 H5  W5N 32 
W5N H7  H3  H 0 1 N N N N N N -27.349 22.609 -2.540 5.712  1.123  0.721  H7  W5N 33 
W5N H8  H4  H 0 1 N N N N N N -25.957 21.477 -2.468 4.841  2.005  -0.557 H8  W5N 34 
W5N H6  H5  H 0 1 N N N N N N -26.936 21.603 -3.969 4.517  2.369  1.155  H6  W5N 35 
W5N H9  H6  H 0 1 N N N N N N -26.000 19.967 -3.191 5.139  -1.160 0.177  H9  W5N 36 
W5N H11 H7  H 0 1 N N N N N N -27.918 17.728 -3.516 2.196  -1.979 0.122  H11 W5N 37 
W5N H10 H8  H 0 1 N N N N N N -26.306 18.004 -4.260 2.901  -1.468 -1.430 H10 W5N 38 
W5N H4  H9  H 0 1 N N N N N N -28.520 22.924 -1.090 2.059  2.575  1.256  H4  W5N 39 
W5N H28 H10 H 0 1 N N N N N N -30.376 19.218 2.252  -2.226 -0.851 -0.741 H28 W5N 40 
W5N H1  H11 H 0 1 N N N N N N -25.941 22.404 1.172  1.913  2.199  3.469  H1  W5N 41 
W5N H2  H12 H 0 1 N N N N N N -26.431 23.216 -0.353 0.153  2.104  3.225  H2  W5N 42 
W5N H3  H13 H 0 1 N N N N N N -27.367 23.495 1.154  1.001  0.806  4.099  H3  W5N 43 
W5N H12 H14 H 0 1 N N N N N N -27.582 19.840 -5.723 4.749  -3.320 -1.030 H12 W5N 44 
W5N H15 H15 H 0 1 N N N N N N -29.448 19.749 -7.219 3.692  -6.133 -1.166 H15 W5N 45 
W5N H13 H16 H 0 1 N N N N N N -29.729 18.059 -7.758 4.889  -5.491 -0.015 H13 W5N 46 
W5N H14 H17 H 0 1 N N N N N N -30.822 18.808 -6.546 3.405  -6.270 0.586  H14 W5N 47 
W5N H17 H18 H 0 1 N N N N N N -28.616 16.579 -4.509 1.319  -3.201 0.056  H17 W5N 48 
W5N H18 H19 H 0 1 N N N N N N -30.329 16.918 -4.932 1.081  -4.917 -0.354 H18 W5N 49 
W5N H16 H20 H 0 1 N N N N N N -29.235 16.168 -6.145 1.607  -4.458 1.283  H16 W5N 50 
W5N H19 H21 H 0 1 N N N N N N -30.985 19.431 -2.943 4.282  0.735  -1.946 H19 W5N 51 
W5N H21 H22 H 0 1 N N N N N N -31.514 20.743 -4.050 2.774  0.290  -2.781 H21 W5N 52 
W5N H20 H23 H 0 1 N N N N N N -29.801 20.200 -4.054 3.613  1.802  -3.204 H20 W5N 53 
W5N H23 H24 H 0 1 N N N N N N -32.352 22.195 -2.104 1.381  2.950  -2.773 H23 W5N 54 
W5N H24 H25 H 0 1 N N N N N N -31.918 20.877 -0.963 0.658  1.413  -2.243 H24 W5N 55 
W5N H25 H26 H 0 1 N N N N N N -30.919 23.776 -0.919 0.954  3.924  -0.533 H25 W5N 56 
W5N H26 H27 H 0 1 N N N N N N -32.001 22.979 0.274  -0.557 3.347  -1.278 H26 W5N 57 
W5N H27 H28 H 0 1 N N N N N N -29.628 23.192 1.068  -0.414 2.653  1.099  H27 W5N 58 
W5N H29 H29 H 0 1 N N N N N N -29.612 20.415 4.866  -4.442 1.048  -0.626 H29 W5N 59 
W5N H31 H30 H 0 1 N N N N N N -31.748 19.300 4.892  -4.374 -0.689 -2.395 H31 W5N 60 
W5N H30 H31 H 0 1 N N N N N N -31.036 17.829 4.146  -4.398 -1.959 -1.149 H30 W5N 61 
W5N H32 H32 H 0 1 N N N N N N -30.408 19.009 6.902  -6.565 0.145  -1.587 H32 W5N 62 
W5N H33 H33 H 0 1 N N N N N N -31.241 17.458 6.546  -6.669 -1.567 -2.063 H33 W5N 63 
W5N H34 H34 H 0 1 N N N N N N -29.199 16.541 5.572  -6.407 -2.242 0.309  H34 W5N 64 
W5N H37 H35 H 0 1 N N N N N N -29.475 16.419 7.972  -8.537 -1.388 1.032  H37 W5N 65 
W5N H35 H36 H 0 1 N N N N N N -27.892 16.487 7.579  -8.518 -0.242 -0.172 H35 W5N 66 
W5N H39 H38 H 0 1 N N N N N N -27.067 17.744 5.624  -6.452 0.765  0.831  H39 W5N 67 
W5N H38 H39 H 0 1 N N N N N N -27.879 19.192 6.310  -6.476 -0.506 2.078  H38 W5N 68 
W5N H40 H40 H 0 1 N N N N N N -28.431 17.912 3.572  -4.285 -1.340 1.269  H40 W5N 69 
W5N H41 H41 H 0 1 N N N N N N -27.589 19.470 3.872  -4.181 0.372  1.745  H41 W5N 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W5N C10 C9  SING N N 1  
W5N C9  C11 SING N N 2  
W5N C9  C8  DOUB N N 3  
W5N C8  C7  SING N N 4  
W5N C7  C6  SING N N 5  
W5N C13 C12 SING N N 6  
W5N O3  C12 SING N N 7  
W5N C6  C4  SING N N 8  
W5N C6  O2  SING N N 9  
W5N C5  C4  SING N N 10 
W5N C4  O2  SING N N 11 
W5N C4  C3  SING N N 12 
W5N C12 C3  SING N N 13 
W5N C12 C14 SING N N 14 
W5N C3  C2  SING N N 15 
W5N C14 C15 SING N N 16 
W5N C2  O1  SING N N 17 
W5N C2  C16 SING N N 18 
W5N C15 C16 SING N N 19 
W5N O1  C1  SING N N 20 
W5N C16 O4  SING N N 21 
W5N O4  C17 SING N N 22 
W5N C17 N1  SING N N 23 
W5N C17 O5  DOUB N N 24 
W5N N1  C18 SING N N 25 
W5N C23 C18 SING N N 26 
W5N C23 C22 SING N N 27 
W5N C18 C19 SING N N 28 
W5N C19 C20 SING N N 29 
W5N C22 C21 SING N N 30 
W5N C20 C21 SING N N 31 
W5N C21 N2  SING N N 32 
W5N O3  H22 SING N N 33 
W5N C3  H5  SING N N 34 
W5N C5  H7  SING N N 35 
W5N C5  H8  SING N N 36 
W5N C5  H6  SING N N 37 
W5N C6  H9  SING N N 38 
W5N C7  H11 SING N N 39 
W5N C7  H10 SING N N 40 
W5N C2  H4  SING N N 41 
W5N N1  H28 SING N N 42 
W5N C1  H1  SING N N 43 
W5N C1  H2  SING N N 44 
W5N C1  H3  SING N N 45 
W5N C8  H12 SING N N 46 
W5N C10 H15 SING N N 47 
W5N C10 H13 SING N N 48 
W5N C10 H14 SING N N 49 
W5N C11 H17 SING N N 50 
W5N C11 H18 SING N N 51 
W5N C11 H16 SING N N 52 
W5N C13 H19 SING N N 53 
W5N C13 H21 SING N N 54 
W5N C13 H20 SING N N 55 
W5N C14 H23 SING N N 56 
W5N C14 H24 SING N N 57 
W5N C15 H25 SING N N 58 
W5N C15 H26 SING N N 59 
W5N C16 H27 SING N N 60 
W5N C18 H29 SING N N 61 
W5N C19 H31 SING N N 62 
W5N C19 H30 SING N N 63 
W5N C20 H32 SING N N 64 
W5N C20 H33 SING N N 65 
W5N C21 H34 SING N N 66 
W5N N2  H37 SING N N 67 
W5N N2  H35 SING N N 68 
W5N C22 H39 SING N N 69 
W5N C22 H38 SING N N 70 
W5N C23 H40 SING N N 71 
W5N C23 H41 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W5N InChI            InChI                1.06  "InChI=1S/C23H40N2O5/c1-14(2)6-11-18-23(4,30-18)20-19(28-5)17(12-13-22(20,3)27)29-21(26)25-16-9-7-15(24)8-10-16/h6,15-20,27H,7-13,24H2,1-5H3,(H,25,26)/t15-,16-,17-,18+,19-,20+,22-,23+/m1/s1" 
W5N InChIKey         InChI                1.06  HIVGAXHLTXHXTO-PGPLIXAESA-N                                                                                                                                                                    
W5N SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@@H](CC[C@@](C)(O)[C@H]1[C@@]2(C)O[C@H]2CC=C(C)C)OC(=O)N[C@H]3CC[C@H](N)CC3"                                                                                                       
W5N SMILES           CACTVS               3.385 "CO[CH]1[CH](CC[C](C)(O)[CH]1[C]2(C)O[CH]2CC=C(C)C)OC(=O)N[CH]3CC[CH](N)CC3"                                                                                                                   
W5N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CC[C@H]1[C@@](O1)(C)[C@H]2[C@@H]([C@@H](CC[C@@]2(C)O)OC(=O)NC3CCC(CC3)N)OC)C"                                                                                                             
W5N SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=CCC1C(O1)(C)C2C(C(CCC2(C)O)OC(=O)NC3CCC(CC3)N)OC)C"                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           W5N 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{R},2~{S},3~{S},4~{R})-2-methoxy-4-methyl-3-[(2~{R},3~{S})-2-methyl-3-(3-methylbut-2-enyl)oxiran-2-yl]-4-oxidanyl-cyclohexyl] ~{N}-(4-azanylcyclohexyl)carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W5N "Create component" 2023-05-02 PDBE 
W5N "Initial release"  2024-04-10 RCSB 
W5N "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      W5N 
_pdbx_chem_comp_synonyms.name         "(3R,4S,5S,6R)-5-methoxy-4-[(2R,3R)-2-methyl-3-(3-methyl-2-buten-1-yl)-2-oxiranyl]-1-oxaspiro[2.5]oct-6-yl N-(trans-4-aminocyclohexyl)carbamate" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            W5N 
_pdbx_chem_comp_pcm.modified_residue_id                HIS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
