data_V1N
# 
_chem_comp.id                                    V1N 
_chem_comp.name                                  "[(2S,3R,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl] 2-(1H-indol-3-yl)ethyl hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H21 N6 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-07-16 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        476.380 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V1N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4B2G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V1N C27  C27  C 0 1 Y N N -23.651 25.245 -2.813 -7.702 1.378  -2.235 C27  V1N 1  
V1N C28  C28  C 0 1 Y N N -22.648 26.002 -3.377 -8.789 1.847  -1.509 C28  V1N 2  
V1N C26  C26  C 0 1 Y N N -24.278 25.581 -1.630 -6.760 0.587  -1.641 C26  V1N 3  
V1N C29  C29  C 0 1 Y N N -22.201 27.162 -2.783 -8.937 1.523  -0.178 C29  V1N 4  
V1N C22  C22  C 0 1 Y N N -23.458 28.534 0.269  -6.722 -0.528 1.821  C22  V1N 5  
V1N C4   C4   C 0 1 Y N N -27.903 19.714 1.421  7.771  0.440  -0.795 C4   V1N 6  
V1N C9   C9   C 0 1 Y N N -25.345 23.167 1.760  3.520  1.120  0.254  C9   V1N 7  
V1N C25  C25  C 0 1 Y N N -23.856 26.747 -1.020 -6.891 0.246  -0.293 C25  V1N 8  
V1N C21  C21  C 0 1 Y N N -24.250 27.413 0.169  -6.093 -0.558 0.636  C21  V1N 9  
V1N C7   C7   C 0 1 Y N N -26.064 21.410 0.772  5.628  1.624  0.308  C7   V1N 10 
V1N C24  C24  C 0 1 Y N N -22.844 27.490 -1.608 -7.990 0.719  0.447  C24  V1N 11 
V1N C6   C6   C 0 1 Y N N -26.795 21.535 1.934  5.496  0.460  -0.468 C6   V1N 12 
V1N C2   C2   C 0 1 Y N N -26.307 20.340 -0.085 6.916  2.154  0.494  C2   V1N 13 
V1N C32  C32  C 0 1 N N R -25.822 22.773 4.899  3.679  -2.253 -0.333 C32  V1N 14 
V1N C30  C30  C 0 1 N N R -25.308 24.019 5.555  2.366  -2.335 0.479  C30  V1N 15 
V1N C11  C11  C 0 1 N N R -26.760 23.257 3.829  3.524  -0.964 -1.169 C11  V1N 16 
V1N C13  C13  C 0 1 N N S -25.404 25.159 4.521  1.574  -1.084 0.037  C13  V1N 17 
V1N C20  C20  C 0 1 N N N -25.296 26.995 1.121  -4.809 -1.281 0.321  C20  V1N 18 
V1N C19  C19  C 0 1 N N N -25.742 28.092 2.074  -3.631 -0.315 0.464  C19  V1N 19 
V1N N5   N5   N 0 1 Y N N -27.756 20.700 2.318  6.583  -0.092 -0.995 N5   V1N 20 
V1N N3   N3   N 0 1 Y N N -27.260 19.469 0.271  7.945  1.532  -0.074 N3   V1N 21 
V1N N8   N8   N 0 1 Y N N -25.165 22.436 0.681  4.386  1.974  0.718  N8   V1N 22 
V1N N23  N23  N 0 1 Y N N -22.622 28.569 -0.805 -7.857 0.230  1.727  N23  V1N 23 
V1N N10  N10  N 0 1 Y N N -26.333 22.662 2.559  4.155  0.167  -0.484 N10  V1N 24 
V1N N1   N1   N 0 1 N N N -25.589 20.155 -1.274 7.109  3.298  1.248  N1   V1N 25 
V1N O16  O16  O 0 1 N N N -26.423 28.970 4.797  -0.770 0.327  1.548  O16  V1N 26 
V1N O12  O12  O 0 1 N N N -26.591 24.695 3.825  2.098  -0.757 -1.269 O12  V1N 27 
V1N O33  O33  O 0 1 N N N -26.496 21.997 5.877  3.810  -3.391 -1.188 O33  V1N 28 
V1N O31  O31  O 0 1 N N N -24.018 23.547 5.948  2.641  -2.284 1.880  O31  V1N 29 
V1N O14  O14  O 0 1 N N N -25.594 26.505 5.091  0.179  -1.384 -0.047 O14  V1N 30 
V1N O18  O18  O 0 1 N N N -24.763 28.180 3.092  -2.413 -1.000 0.166  O18  V1N 31 
V1N O17  O17  O 0 1 N N N -23.978 28.590 5.388  -0.895 0.853  -0.918 O17  V1N 32 
V1N P15  P15  P 0 1 N N N -25.214 28.112 4.671  -0.971 -0.288 0.216  P15  V1N 33 
V1N H27  H27  H 0 1 N N N -23.962 24.344 -3.321 -7.603 1.638  -3.278 H27  V1N 34 
V1N H28  H28  H 0 1 N N N -22.202 25.679 -4.306 -9.526 2.471  -1.993 H28  V1N 35 
V1N H26  H26  H 0 1 N N N -25.057 24.966 -1.204 -5.917 0.226  -2.212 H26  V1N 36 
V1N H29  H29  H 0 1 N N N -21.411 27.766 -3.204 -9.786 1.893  0.378  H29  V1N 37 
V1N H22  H22  H 0 1 N N N -23.494 29.263 1.065  -6.383 -1.028 2.716  H22  V1N 38 
V1N H23  H23  H 0 1 N N N -21.944 29.283 -0.979 -8.477 0.398  2.455  H23  V1N 39 
V1N H4   H4   H 0 1 N N N -28.670 18.995 1.667  8.635  -0.036 -1.234 H4   V1N 40 
V1N H9   H9   H 0 1 N N N -24.780 24.059 1.987  2.455  1.161  0.428  H9   V1N 41 
V1N H201 H201 H 0 0 N N N -26.172 26.659 0.546  -4.682 -2.114 1.012  H201 V1N 42 
V1N H202 H202 H 0 0 N N N -24.906 26.157 1.717  -4.846 -1.659 -0.701 H202 V1N 43 
V1N H11N H11N H 0 0 N N N -25.913 19.328 -1.734 6.350  3.744  1.656  H11N V1N 44 
V1N H12N H12N H 0 0 N N N -25.726 20.945 -1.872 8.003  3.655  1.369  H12N V1N 45 
V1N H32  H32  H 0 1 N N N -24.990 22.212 4.447  4.536  -2.175 0.335  H32  V1N 46 
V1N H30  H30  H 0 1 N N N -25.924 24.266 6.432  1.818  -3.243 0.228  H30  V1N 47 
V1N H11  H11  H 0 1 N N N -27.796 22.976 4.069  3.959  -1.098 -2.159 H11  V1N 48 
V1N H33  H33  H 0 1 N N N -26.829 21.202 5.477  3.851  -4.234 -0.716 H33  V1N 49 
V1N H13  H13  H 0 1 N N N -24.525 25.137 3.860  1.745  -0.262 0.731  H13  V1N 50 
V1N H31  H31  H 0 1 N N N -23.548 24.242 6.393  1.852  -2.332 2.437  H31  V1N 51 
V1N H191 H191 H 0 0 N N N -25.817 29.050 1.539  -3.758 0.518  -0.227 H191 V1N 52 
V1N H192 H192 H 0 0 N N N -26.719 27.838 2.511  -3.594 0.064  1.486  H192 V1N 53 
V1N H17  H17  H 0 1 N N N -24.166 29.407 5.834  -1.018 0.521  -1.818 H17  V1N 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V1N C27 C28  SING Y N 1  
V1N C27 C26  DOUB Y N 2  
V1N C28 C29  DOUB Y N 3  
V1N C26 C25  SING Y N 4  
V1N C29 C24  SING Y N 5  
V1N C22 C21  DOUB Y N 6  
V1N C22 N23  SING Y N 7  
V1N C4  N5   SING Y N 8  
V1N C4  N3   DOUB Y N 9  
V1N C9  N8   DOUB Y N 10 
V1N C9  N10  SING Y N 11 
V1N C25 C21  SING Y N 12 
V1N C25 C24  DOUB Y N 13 
V1N C21 C20  SING N N 14 
V1N C7  C6   SING Y N 15 
V1N C7  C2   DOUB Y N 16 
V1N C7  N8   SING Y N 17 
V1N C24 N23  SING Y N 18 
V1N C6  N5   DOUB Y N 19 
V1N C6  N10  SING Y N 20 
V1N C2  N3   SING Y N 21 
V1N C2  N1   SING N N 22 
V1N C32 C30  SING N N 23 
V1N C32 C11  SING N N 24 
V1N C32 O33  SING N N 25 
V1N C30 C13  SING N N 26 
V1N C30 O31  SING N N 27 
V1N C11 N10  SING N N 28 
V1N C11 O12  SING N N 29 
V1N C13 O12  SING N N 30 
V1N C13 O14  SING N N 31 
V1N C20 C19  SING N N 32 
V1N C19 O18  SING N N 33 
V1N O16 P15  DOUB N N 34 
V1N O17 P15  SING N N 35 
V1N O14 P15  SING N N 36 
V1N O18 P15  SING N N 37 
V1N C27 H27  SING N N 38 
V1N C28 H28  SING N N 39 
V1N C26 H26  SING N N 40 
V1N C29 H29  SING N N 41 
V1N C22 H22  SING N N 42 
V1N N23 H23  SING N N 43 
V1N C4  H4   SING N N 44 
V1N C9  H9   SING N N 45 
V1N C20 H201 SING N N 46 
V1N C20 H202 SING N N 47 
V1N N1  H11N SING N N 48 
V1N N1  H12N SING N N 49 
V1N C32 H32  SING N N 50 
V1N C30 H30  SING N N 51 
V1N C11 H11  SING N N 52 
V1N O33 H33  SING N N 53 
V1N C13 H13  SING N N 54 
V1N O31 H31  SING N N 55 
V1N C19 H191 SING N N 56 
V1N C19 H192 SING N N 57 
V1N O17 H17  SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V1N SMILES           ACDLabs              12.01 "O=P(O)(OC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)OCCc5c4ccccc4nc5" 
V1N InChI            InChI                1.03  
"InChI=1S/C19H21N6O7P/c20-16-13-17(23-8-22-16)25(9-24-13)18-14(26)15(27)19(31-18)32-33(28,29)30-6-5-10-7-21-12-4-2-1-3-11(10)12/h1-4,7-9,14-15,18-19,21,26-27H,5-6H2,(H,28,29)(H2,20,22,23)/t14-,15-,18-,19+/m1/s1" 
V1N InChIKey         InChI                1.03  OLRAQXYDQRFQTA-RGCFKVTRSA-N 
V1N SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H](O[P](O)(=O)OCCc4c[nH]c5ccccc45)[C@H](O)[C@H]3O" 
V1N SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](O[P](O)(=O)OCCc4c[nH]c5ccccc45)[CH](O)[CH]3O" 
V1N SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)c(c[nH]2)CCOP(=O)(O)O[C@H]3[C@@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" 
V1N SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)c(c[nH]2)CCOP(=O)(O)OC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
V1N "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl 2-(1H-indol-3-yl)ethyl hydrogen (S)-phosphate" 
V1N "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2S,3R,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl] 2-(1H-indol-3-yl)ethyl hydrogen phosphate"            
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V1N "Create component"  2012-07-16 EBI  
V1N "Initial release"   2012-12-14 RCSB 
V1N "Modify descriptor" 2014-09-05 RCSB 
# 
