data_S1N
# 
_chem_comp.id                                    S1N 
_chem_comp.name                                  "(~{E})-4-methylnon-4-enedial" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        168.233 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S1N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6ZFX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S1N C12 C1  C 0 1 N N N N N N 184.380 99.917  150.587 -4.308 1.034  0.484  C12 S1N 1  
S1N C1  C2  C 0 1 N N N N N N 183.930 101.145 156.608 0.948  -2.238 0.855  C1  S1N 2  
S1N C2  C3  C 0 1 N N N N N N 182.646 101.683 156.056 1.169  -1.184 -0.199 C2  S1N 3  
S1N C3  C4  C 0 1 N N N N N N 181.372 101.826 156.885 2.564  -0.702 -0.503 C3  S1N 4  
S1N C4  C5  C 0 1 N N N N N N 181.493 102.278 158.348 2.946  0.408  0.479  C4  S1N 5  
S1N C5  C6  C 0 1 N N N N N N 181.070 103.725 158.511 4.341  0.889  0.175  C5  S1N 6  
S1N C8  C7  C 0 1 N N N N N N 182.548 102.038 154.750 0.148  -0.685 -0.851 C8  S1N 7  
S1N C9  C8  C 0 1 N N N N N N 183.684 101.967 153.746 -1.256 -1.074 -0.465 C9  S1N 8  
S1N C10 C9  C 0 1 N N N N N N 183.336 101.027 152.595 -2.076 0.187  -0.185 C10 S1N 9  
S1N C11 C10 C 0 1 N N N N N N 184.580 100.325 152.036 -3.501 -0.208 0.208  C11 S1N 10 
S1N O6  O1  O 0 1 N N N N N N 181.297 104.344 159.542 4.544  2.061  -0.034 O6  S1N 11 
S1N O13 O2  O 0 1 N N N N N N 185.306 99.500  149.899 -5.348 1.220  -0.101 O13 S1N 12 
S1N H1  H1  H 0 1 N N N N N N 183.395 99.996  150.150 -3.959 1.756  1.207  H1  S1N 13 
S1N H2  H2  H 0 1 N N N N N N 183.804 100.919 157.677 1.911  -2.593 1.221  H2  S1N 14 
S1N H3  H3  H 0 1 N N N N N N 184.204 100.226 156.069 0.380  -1.812 1.681  H3  S1N 15 
S1N H4  H4  H 0 1 N N N N N N 184.725 101.895 156.483 0.394  -3.072 0.424  H4  S1N 16 
S1N H5  H5  H 0 1 N N N N N N 180.732 102.558 156.371 3.264  -1.532 -0.403 H5  S1N 17 
S1N H6  H6  H 0 1 N N N N N N 180.876 100.844 156.889 2.602  -0.316 -1.521 H6  S1N 18 
S1N H7  H7  H 0 1 N N N N N N 180.849 101.643 158.974 2.246  1.237  0.379  H7  S1N 19 
S1N H8  H8  H 0 1 N N N N N N 182.539 102.171 158.671 2.909  0.021  1.497  H8  S1N 20 
S1N H9  H9  H 0 1 N N N N N N 180.557 104.220 157.700 5.161  0.185  0.144  H9  S1N 21 
S1N H10 H10 H 0 1 N N N N N N 181.592 102.397 154.399 0.312  0.004  -1.666 H10 S1N 22 
S1N H11 H11 H 0 1 N N N N N N 184.589 101.598 154.251 -1.715 -1.633 -1.280 H11 S1N 23 
S1N H12 H12 H 0 1 N N N N N N 183.873 102.973 153.344 -1.227 -1.695 0.431  H12 S1N 24 
S1N H13 H13 H 0 1 N N N N N N 182.864 101.609 151.790 -1.616 0.746  0.630  H13 S1N 25 
S1N H14 H14 H 0 1 N N N N N N 182.631 100.265 152.958 -2.104 0.808  -1.080 H14 S1N 26 
S1N H15 H15 H 0 1 N N N N N N 184.784 99.426  152.636 -3.472 -0.829 1.104  H15 S1N 27 
S1N H16 H16 H 0 1 N N N N N N 185.437 101.011 152.100 -3.960 -0.767 -0.607 H16 S1N 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S1N O13 C12 DOUB N N 1  
S1N C12 C11 SING N N 2  
S1N C11 C10 SING N N 3  
S1N C10 C9  SING N N 4  
S1N C9  C8  SING N N 5  
S1N C8  C2  DOUB N E 6  
S1N C2  C1  SING N N 7  
S1N C2  C3  SING N N 8  
S1N C3  C4  SING N N 9  
S1N C4  C5  SING N N 10 
S1N C5  O6  DOUB N N 11 
S1N C12 H1  SING N N 12 
S1N C1  H2  SING N N 13 
S1N C1  H3  SING N N 14 
S1N C1  H4  SING N N 15 
S1N C3  H5  SING N N 16 
S1N C3  H6  SING N N 17 
S1N C4  H7  SING N N 18 
S1N C4  H8  SING N N 19 
S1N C5  H9  SING N N 20 
S1N C8  H10 SING N N 21 
S1N C9  H11 SING N N 22 
S1N C9  H12 SING N N 23 
S1N C10 H13 SING N N 24 
S1N C10 H14 SING N N 25 
S1N C11 H15 SING N N 26 
S1N C11 H16 SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S1N InChI            InChI                1.03  "InChI=1S/C10H16O2/c1-10(7-5-9-12)6-3-2-4-8-11/h6,8-9H,2-5,7H2,1H3/b10-6+" 
S1N InChIKey         InChI                1.03  AFKSPUYAXUNQPA-UXBLZVDNSA-N                                                
S1N SMILES_CANONICAL CACTVS               3.385 "C\C(CCC=O)=C/CCCC=O"                                                      
S1N SMILES           CACTVS               3.385 "CC(CCC=O)=CCCCC=O"                                                        
S1N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C(=C\CCCC=O)/CCC=O"                                                     
S1N SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=CCCCC=O)CCC=O"                                                        
# 
_pdbx_chem_comp_identifier.comp_id           S1N 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(~{E})-4-methylnon-4-enedial" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S1N "Create component" 2020-11-05 PDBE 
S1N "Initial release"  2020-11-18 RCSB 
S1N "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 S1N LYS None Lipid/lipid-like "Amino-acid side chain" "Any position" C1 NZ ? ? 
2 S1N LYS None Lipid/lipid-like "Amino-acid side chain" "Any position" C5 NZ ? ? 
# 
