data_P6N
# 
_chem_comp.id                                    P6N 
_chem_comp.name                                  "(2~{S})-2-methyl-3,4-dihydro-2~{H}-naphthalen-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H12 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-04-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        160.212 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     P6N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6YNQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
P6N C11  C1  C 0 1 N N N N N N 6.482 -0.407 18.656 -1.001 0.837  0.083  C11  P6N 1  
P6N C10  C2  C 0 1 Y N N N N N 5.501 0.531  19.529 0.424  0.454  0.045  C10  P6N 2  
P6N C01  C3  C 0 1 N N N N N N 7.941 -2.435 18.418 -3.408 0.205  -0.043 C01  P6N 3  
P6N C02  C4  C 0 1 N N S N N N 6.909 -1.697 19.255 -2.012 -0.247 0.391  C02  P6N 4  
P6N C03  C5  C 0 1 N N N N N N 7.403 -1.450 20.672 -1.599 -1.496 -0.398 C03  P6N 5  
P6N C04  C6  C 0 1 N N N N N N 6.351 -0.821 21.623 -0.245 -1.988 0.105  C04  P6N 6  
P6N C05  C7  C 0 1 Y N N N N N 5.459 0.307  20.929 0.787  -0.894 0.051  C05  P6N 7  
P6N C06  C8  C 0 1 Y N N N N N 4.608 1.091  21.721 2.126  -1.234 0.010  C06  P6N 8  
P6N C07  C9  C 0 1 Y N N N N N 3.827 2.077  21.107 3.096  -0.249 -0.033 C07  P6N 9  
P6N C08  C10 C 0 1 Y N N N N N 3.875 2.297  19.703 2.739  1.088  -0.036 C08  P6N 10 
P6N C09  C11 C 0 1 Y N N N N N 4.713 1.520  18.894 1.408  1.446  0.002  C09  P6N 11 
P6N O12  O1  O 0 1 N N N N N N 6.849 -0.027 17.585 -1.349 1.981  -0.120 O12  P6N 12 
P6N H013 H1  H 0 0 N N N N N N 8.212 -3.377 18.916 -3.409 0.403  -1.115 H013 P6N 13 
P6N H1   H2  H 0 1 N N N N N N 7.520 -2.653 17.426 -4.130 -0.580 0.182  H1   P6N 14 
P6N H012 H3  H 0 0 N N N N N N 8.838 -1.808 18.306 -3.680 1.113  0.495  H012 P6N 15 
P6N H021 H4  H 0 0 N N N N N N 6.022 -2.344 19.326 -2.009 -0.464 1.460  H021 P6N 16 
P6N H031 H5  H 0 0 N N N N N N 7.718 -2.414 21.098 -2.345 -2.279 -0.257 H031 P6N 17 
P6N H032 H6  H 0 0 N N N N N N 8.268 -0.772 20.620 -1.526 -1.250 -1.457 H032 P6N 18 
P6N H041 H7  H 0 0 N N N N N N 5.685 -1.619 21.982 -0.349 -2.331 1.134  H041 P6N 19 
P6N H042 H8  H 0 0 N N N N N N 6.879 -0.371 22.477 0.086  -2.820 -0.516 H042 P6N 20 
P6N H061 H9  H 0 0 N N N N N N 4.556 0.936  22.789 2.417  -2.274 0.012  H061 P6N 21 
P6N H071 H10 H 0 0 N N N N N N 3.173 2.685  21.714 4.140  -0.525 -0.064 H071 P6N 22 
P6N H081 H11 H 0 0 N N N N N N 3.262 3.067  19.258 3.503  1.851  -0.069 H081 P6N 23 
P6N H091 H12 H 0 0 N N N N N N 4.756 1.670  17.825 1.126  2.488  -0.002 H091 P6N 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
P6N O12 C11  DOUB N N 1  
P6N C01 C02  SING N N 2  
P6N C11 C02  SING N N 3  
P6N C11 C10  SING N N 4  
P6N C09 C10  DOUB Y N 5  
P6N C09 C08  SING Y N 6  
P6N C02 C03  SING N N 7  
P6N C10 C05  SING Y N 8  
P6N C08 C07  DOUB Y N 9  
P6N C03 C04  SING N N 10 
P6N C05 C04  SING N N 11 
P6N C05 C06  DOUB Y N 12 
P6N C07 C06  SING Y N 13 
P6N C01 H013 SING N N 14 
P6N C01 H1   SING N N 15 
P6N C01 H012 SING N N 16 
P6N C02 H021 SING N N 17 
P6N C03 H031 SING N N 18 
P6N C03 H032 SING N N 19 
P6N C04 H041 SING N N 20 
P6N C04 H042 SING N N 21 
P6N C06 H061 SING N N 22 
P6N C07 H071 SING N N 23 
P6N C08 H081 SING N N 24 
P6N C09 H091 SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
P6N InChI            InChI                1.03  "InChI=1S/C11H12O/c1-8-6-7-9-4-2-3-5-10(9)11(8)12/h2-5,8H,6-7H2,1H3/t8-/m0/s1" 
P6N InChIKey         InChI                1.03  GANIBVZSZGNMNB-QMMMGPOBSA-N                                                    
P6N SMILES_CANONICAL CACTVS               3.385 "C[C@H]1CCc2ccccc2C1=O"                                                        
P6N SMILES           CACTVS               3.385 "C[CH]1CCc2ccccc2C1=O"                                                         
P6N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCc2ccccc2C1=O"                                                        
P6N SMILES           "OpenEye OEToolkits" 2.0.7 CC1CCc2ccccc2C1=O                                                              
# 
_pdbx_chem_comp_identifier.comp_id           P6N 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-methyl-3,4-dihydro-2~{H}-naphthalen-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
P6N "Create component" 2020-04-16 PDBE 
P6N "Initial release"  2020-04-29 RCSB 
P6N "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            P6N 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C01 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
