data_OTN
#

_chem_comp.id                                   OTN
_chem_comp.name                                 "2-nitrophenyl 1-thio-beta-D-galactopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H15 N O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-(2-nitrophenyl)sulfanyl-oxane-3,4,5-triol; 2-nitrophenyl
1-thio-beta-D-galactoside; 2-nitrophenyl 1-thio-D-galactoside; 2-nitrophenyl 1-thio-galactoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-02-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       317.315
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OTN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4OZO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  OTN  "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-(2-nitrophenyl)sulfanyl-oxane-3,4,5-triol"  PDB  ?  
2  OTN  "2-nitrophenyl 1-thio-beta-D-galactoside"                                         PDB  ?  
3  OTN  "2-nitrophenyl 1-thio-D-galactoside"                                              PDB  ?  
4  OTN  "2-nitrophenyl 1-thio-galactoside"                                                PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OTN  "O2'"  "O2'"  O  -1  1  N  N  N  29.818  -32.047   1.168  -4.878  -1.343  -0.914  "O2'"  OTN   1  
OTN  "N1'"  "N1'"  N   1  1  N  N  N  29.027  -32.134   2.386  -3.694  -1.214  -0.657  "N1'"  OTN   2  
OTN  "O3'"  "O3'"  O   0  1  N  N  N  28.915  -33.324   3.024  -2.911  -2.105  -0.931  "O3'"  OTN   3  
OTN  "C2'"  "C2'"  C   0  1  Y  N  N  28.460  -30.998   2.833  -3.207   0.028  -0.015  "C2'"  OTN   4  
OTN  "C3'"  "C3'"  C   0  1  Y  N  N  28.614  -29.845   2.068  -4.095   1.039   0.296  "C3'"  OTN   5  
OTN  "C4'"  "C4'"  C   0  1  Y  N  N  28.056  -28.642   2.466  -3.641   2.200   0.895  "C4'"  OTN   6  
OTN  "C5'"  "C5'"  C   0  1  Y  N  N  27.317  -28.589   3.635  -2.297   2.353   1.184  "C5'"  OTN   7  
OTN  "C6'"  "C6'"  C   0  1  Y  N  N  27.145  -29.742   4.390  -1.404   1.346   0.876  "C6'"  OTN   8  
OTN  "C1'"  "C1'"  C   0  1  Y  N  N  27.684  -30.962   3.997  -1.857   0.176   0.279  "C1'"  OTN   9  
OTN  S01    S01    S   0  1  N  N  N  27.420  -32.324   5.061  -0.722  -1.115  -0.110  S01    OTN  10  
OTN  C1     C1     C   0  1  N  N  S  26.113  -31.721   6.122   0.865  -0.446   0.458  C1     OTN  11  
OTN  O5     O5     O   0  1  N  N  N  26.564  -30.803   7.179   1.207   0.700  -0.323  O5     OTN  12  
OTN  C5     C5     C   0  1  N  N  R  25.443  -30.396   7.977   2.435   1.323   0.061  C5     OTN  13  
OTN  C6     C6     C   0  1  N  N  N  25.950  -29.429   9.048   2.683   2.548  -0.821  C6     OTN  14  
OTN  O6     O6     O   0  1  N  N  N  26.544  -28.293   8.417   1.670   3.526  -0.575  O6     OTN  15  
OTN  C4     C4     C   0  1  N  N  R  24.782  -31.607   8.647   3.586   0.328  -0.112  C4     OTN  16  
OTN  O4     O4     O   0  1  N  N  N  25.723  -32.294   9.478   3.699  -0.037  -1.489  O4     OTN  17  
OTN  C3     C3     C   0  1  N  N  S  24.334  -32.531   7.551   3.301  -0.921   0.727  C3     OTN  18  
OTN  O3     O3     O   0  1  N  N  N  23.666  -33.716   8.074   4.334  -1.885   0.515  O3     OTN  19  
OTN  C2     C2     C   0  1  N  N  R  25.561  -32.945   6.760   1.953  -1.512   0.302  C2     OTN  20  
OTN  O2     O2     O   0  1  N  N  N  25.085  -33.805   5.745   1.643  -2.636   1.128  O2     OTN  21  
OTN  H1A    H1     H   0  1  N  N  N  29.178  -29.890   1.148  -5.145   0.923   0.072  H1A    OTN  22  
OTN  H2A    H2     H   0  1  N  N  N  28.196  -27.753   1.869  -4.338   2.989   1.137  H2A    OTN  23  
OTN  H3A    H3     H   0  1  N  N  N  26.877  -27.657   3.958  -1.946   3.261   1.651  H3A    OTN  24  
OTN  H4A    H4     H   0  1  N  N  N  26.577  -29.690   5.307  -0.355   1.467   1.101  H4A    OTN  25  
OTN  H1     H5     H   0  1  N  N  N  25.362  -31.243   5.475   0.785  -0.161   1.507  H1     OTN  26  
OTN  H5     H6     H   0  1  N  N  N  24.697  -29.881   7.354   2.375   1.632   1.104  H5     OTN  27  
OTN  H61    H7     H   0  1  N  N  N  25.108  -29.102   9.676   3.660   2.971  -0.589  H61    OTN  28  
OTN  H62    H8     H   0  1  N  N  N  26.699  -29.935   9.674   2.655   2.253  -1.870  H62    OTN  29  
OTN  HO6    H9     H   0  1  N  Y  N  26.860  -27.691   9.080   1.765   4.331  -1.101  HO6    OTN  30  
OTN  H4     H10    H   0  1  N  N  N  23.913  -31.272   9.232   4.517   0.787   0.221  H4     OTN  31  
OTN  HO4    H11    H   0  1  N  Y  N  26.012  -31.716  10.175   4.410  -0.666  -1.672  HO4    OTN  32  
OTN  H3     H12    H   0  1  N  N  N  23.650  -31.987   6.883   3.265  -0.651   1.783  H3     OTN  33  
OTN  HO3    H13    H   0  1  N  Y  N  22.898  -33.455   8.569   4.217  -2.704   1.017  HO3    OTN  34  
OTN  H2     H14    H   0  1  N  N  N  26.304  -33.429   7.411   2.007  -1.828  -0.740  H2     OTN  35  
OTN  HO2    H15    H   0  1  N  Y  N  24.729  -34.593   6.138   0.799  -3.058   0.917  HO2    OTN  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OTN  "O2'"  "N1'"  SING  N  N   1  
OTN  "C3'"  "C4'"  DOUB  Y  N   2  
OTN  "C3'"  "C2'"  SING  Y  N   3  
OTN  "N1'"  "C2'"  SING  N  N   4  
OTN  "N1'"  "O3'"  DOUB  N  N   5  
OTN  "C4'"  "C5'"  SING  Y  N   6  
OTN  "C2'"  "C1'"  DOUB  Y  N   7  
OTN  "C5'"  "C6'"  DOUB  Y  N   8  
OTN  "C1'"  "C6'"  SING  Y  N   9  
OTN  "C1'"  S01    SING  N  N  10  
OTN  S01    C1     SING  N  N  11  
OTN  O2     C2     SING  N  N  12  
OTN  C1     C2     SING  N  N  13  
OTN  C1     O5     SING  N  N  14  
OTN  C2     C3     SING  N  N  15  
OTN  O5     C5     SING  N  N  16  
OTN  C3     O3     SING  N  N  17  
OTN  C3     C4     SING  N  N  18  
OTN  C5     C4     SING  N  N  19  
OTN  C5     C6     SING  N  N  20  
OTN  O6     C6     SING  N  N  21  
OTN  C4     O4     SING  N  N  22  
OTN  "C3'"  H1A    SING  N  N  23  
OTN  "C4'"  H2A    SING  N  N  24  
OTN  "C5'"  H3A    SING  N  N  25  
OTN  "C6'"  H4A    SING  N  N  26  
OTN  C1     H1     SING  N  N  27  
OTN  C5     H5     SING  N  N  28  
OTN  C6     H61    SING  N  N  29  
OTN  C6     H62    SING  N  N  30  
OTN  O6     HO6    SING  N  N  31  
OTN  C4     H4     SING  N  N  32  
OTN  O4     HO4    SING  N  N  33  
OTN  C3     H3     SING  N  N  34  
OTN  O3     HO3    SING  N  N  35  
OTN  C2     H2     SING  N  N  36  
OTN  O2     HO2    SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OTN  SMILES            ACDLabs               12.01  "[O-][N+](=O)c2c(SC1OC(C(O)C(O)C1O)CO)cccc2"  
OTN  InChI             InChI                 1.03   "InChI=1S/C12H15NO7S/c14-5-7-9(15)10(16)11(17)12(20-7)21-8-4-2-1-3-6(8)13(18)19/h1-4,7,9-12,14-17H,5H2/t7-,9+,10+,11-,12+/m1/s1"  
OTN  InChIKey          InChI                 1.03   SZAOZNVCHHBUDZ-RUXWNWLUSA-N  
OTN  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](Sc2ccccc2[N+]([O-])=O)[C@H](O)[C@@H](O)[C@H]1O"  
OTN  SMILES            CACTVS                3.385  "OC[CH]1O[CH](Sc2ccccc2[N+]([O-])=O)[CH](O)[CH](O)[CH]1O"  
OTN  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "c1ccc(c(c1)[N+](=O)[O-])S[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O"  
OTN  SMILES            "OpenEye OEToolkits"  1.9.2  "c1ccc(c(c1)[N+](=O)[O-])SC2C(C(C(C(O2)CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OTN  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-nitrophenyl 1-thio-beta-D-galactopyranoside"  
OTN  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-(2-nitrophenyl)sulfanyl-oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
OTN  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
OTN  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
OTN  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
OTN  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OTN  "Create component"          2014-02-19  RCSB  
OTN  "Initial release"           2014-03-05  RCSB  
OTN  "Modify descriptor"         2014-09-05  RCSB  
OTN  "Other modification"        2020-07-03  RCSB  
OTN  "Modify name"               2020-07-17  RCSB  
OTN  "Modify synonyms"           2020-07-17  RCSB  
OTN  "Modify internal type"      2020-07-17  RCSB  
OTN  "Modify linking type"       2020-07-17  RCSB  
OTN  "Modify atom id"            2020-07-17  RCSB  
OTN  "Modify component atom id"  2020-07-17  RCSB  
OTN  "Modify leaving atom flag"  2020-07-17  RCSB  
##
