data_ODN
# 
_chem_comp.id                                    ODN 
_chem_comp.name                                  "(1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H30 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-25 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        366.449 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ODN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4PE7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ODN O3  O1  O 0 1 N N N N N N -4.187  -5.639  14.395 -1.936 -1.715 -1.595 O3  ODN 1  
ODN C17 C1  C 0 1 N N N N N N -5.246  -6.073  13.956 -2.159 -0.851 -0.784 C17 ODN 2  
ODN C10 C2  C 0 1 N N R N N N -6.124  -7.079  14.674 -1.187 -0.201 0.166  C10 ODN 3  
ODN C18 C3  C 0 1 N N S N N N -5.464  -8.326  15.287 -0.283 -1.162 0.908  C18 ODN 4  
ODN O4  O2  O 0 1 N N N N N N -4.565  -8.935  14.354 -1.037 -2.248 1.443  O4  ODN 5  
ODN O1  O3  O 0 1 N N N N N N -6.523  -9.239  15.624 0.336  -0.417 1.979  O1  ODN 6  
ODN C8  C4  C 0 1 N N N N N N -7.527  -8.691  16.494 0.988  0.768  1.511  C8  ODN 7  
ODN C19 C5  C 0 1 N N S N N N -4.706  -8.046  16.584 0.856  -1.702 0.036  C19 ODN 8  
ODN O5  O4  O 0 1 N N N N N N -3.562  -7.214  16.354 0.324  -2.500 -1.024 O5  ODN 9  
ODN C6  C6  C 0 1 N N R N N N -5.650  -7.405  17.602 1.653  -0.535 -0.547 C6  ODN 10 
ODN C3  C7  C 0 1 N N N N N N -5.523  -8.044  19.009 3.148  -0.700 -0.388 C3  ODN 11 
ODN C5  C8  C 0 1 N N N N N N -4.139  -7.708  19.536 3.608  -1.898 -1.244 C5  ODN 12 
ODN C4  C9  C 0 1 N N N N N N -5.643  -9.566  19.028 3.573  -0.966 1.055  C4  ODN 13 
ODN C2  C10 C 0 1 N N N N N N -6.543  -7.407  19.935 3.879  0.541  -0.913 C2  ODN 14 
ODN C1  C11 C 0 1 N N N N N N -7.942  -7.548  19.361 3.370  1.790  -0.203 C1  ODN 15 
ODN C13 C12 C 0 1 N N R N N N -5.832  -5.649  12.632 -3.510 -0.193 -0.531 C13 ODN 16 
ODN C14 C13 C 0 1 N N N N N N -5.814  -4.144  12.361 -4.282 0.027  -1.822 C14 ODN 17 
ODN C12 C14 C 0 1 N N S N N N -7.249  -6.147  12.814 -3.166 1.127  0.199  C12 ODN 18 
ODN C11 C15 C 0 1 N N R N N N -7.036  -7.467  13.514 -2.057 0.603  1.168  C11 ODN 19 
ODN O2  O5  O 0 1 N N N N N N -6.377  -8.402  12.656 -2.629 -0.252 2.163  O2  ODN 20 
ODN C15 C16 C 0 1 N N N N N N -8.009  -5.224  13.764 -2.484 2.101  -0.766 C15 ODN 21 
ODN C16 C17 C 0 1 N N N N N N -8.212  -5.816  15.169 -0.985 2.209  -0.440 C16 ODN 22 
ODN C9  C18 C 0 1 N N S N N N -6.920  -6.379  15.774 -0.345 0.836  -0.597 C9  ODN 23 
ODN C7  C19 C 0 1 N N S N N N -7.071  -7.321  17.000 1.079  0.777  -0.011 C7  ODN 24 
ODN C   C20 C 0 1 N N S N N N -8.062  -6.789  18.041 1.880  1.978  -0.491 C   ODN 25 
ODN O   O6  O 0 1 N N N N N N -9.416  -6.961  17.604 1.438  3.159  0.190  O   ODN 26 
ODN H1  H1  H 0 1 N N N N N N -4.168  -9.702  14.750 -0.506 -2.894 1.928  H1  ODN 27 
ODN H2  H2  H 0 1 N N N N N N -8.472  -8.582  15.941 0.398  1.634  1.837  H2  ODN 28 
ODN H3  H3  H 0 1 N N N N N N -7.679  -9.366  17.349 1.972  0.856  1.959  H3  ODN 29 
ODN H4  H4  H 0 1 N N N N N N -4.372  -9.010  16.995 1.489  -2.341 0.653  H4  ODN 30 
ODN H5  H5  H 0 1 N N N N N N -3.744  -6.615  15.639 -0.185 -3.264 -0.724 H5  ODN 31 
ODN H6  H6  H 0 1 N N N N N N -5.311  -6.365  17.715 1.446  -0.540 -1.645 H6  ODN 32 
ODN H7  H7  H 0 1 N N N N N N -4.011  -8.146  20.537 3.365  -1.711 -2.290 H7  ODN 33 
ODN H8  H8  H 0 1 N N N N N N -3.378  -8.119  18.856 4.685  -2.028 -1.139 H8  ODN 34 
ODN H9  H9  H 0 1 N N N N N N -4.025  -6.616  19.597 3.099  -2.802 -0.909 H9  ODN 35 
ODN H10 H10 H 0 1 N N N N N N -5.541  -9.929  20.061 3.014  -1.816 1.447  H10 ODN 36 
ODN H11 H11 H 0 1 N N N N N N -6.625  -9.861  18.631 4.639  -1.189 1.084  H11 ODN 37 
ODN H12 H12 H 0 1 N N N N N N -4.849  -10.004 18.405 3.368  -0.085 1.663  H12 ODN 38 
ODN H13 H13 H 0 1 N N N N N N -6.502  -7.904  20.916 4.950  0.428  -0.740 H13 ODN 39 
ODN H14 H14 H 0 1 N N N N N N -6.307  -6.339  20.055 3.698  0.632  -1.986 H14 ODN 40 
ODN H15 H15 H 0 1 N N N N N N -8.670  -7.142  20.079 3.533  1.718  0.870  H15 ODN 41 
ODN H16 H16 H 0 1 N N N N N N -8.155  -8.613  19.186 3.915  2.663  -0.578 H16 ODN 42 
ODN H17 H17 H 0 1 N N N N N N -5.342  -6.187  11.807 -4.096 -0.835 0.141  H17 ODN 43 
ODN H18 H18 H 0 1 N N N N N N -4.775  -3.806  12.232 -3.686 0.636  -2.502 H18 ODN 44 
ODN H19 H19 H 0 1 N N N N N N -6.385  -3.930  11.446 -4.493 -0.936 -2.287 H19 ODN 45 
ODN H20 H20 H 0 1 N N N N N N -6.269  -3.613  13.210 -5.219 0.538  -1.602 H20 ODN 46 
ODN H21 H21 H 0 1 N N N N N N -7.772  -6.267  11.854 -4.015 1.559  0.728  H21 ODN 47 
ODN H22 H22 H 0 1 N N N N N N -7.990  -7.862  13.893 -1.509 1.415  1.630  H22 ODN 48 
ODN H23 H23 H 0 1 N N N N N N -6.254  -9.223  13.117 -3.282 0.183  2.728  H23 ODN 49 
ODN H24 H24 H 0 1 N N N N N N -7.445  -4.285  13.861 -2.584 1.802  -1.805 H24 ODN 50 
ODN H25 H25 H 0 1 N N N N N N -8.997  -5.015  13.329 -2.934 3.096  -0.652 H25 ODN 51 
ODN H26 H26 H 0 1 N N N N N N -8.593  -5.025  15.831 -0.529 2.905  -1.154 H26 ODN 52 
ODN H27 H27 H 0 1 N N N N N N -8.951  -6.628  15.104 -0.849 2.598  0.563  H27 ODN 53 
ODN H28 H28 H 0 1 N N N N N N -6.321  -5.519  16.107 -0.302 0.562  -1.654 H28 ODN 54 
ODN H29 H29 H 0 1 N N N N N N -7.852  -5.724  18.221 1.732  2.111  -1.564 H29 ODN 55 
ODN H30 H30 H 0 1 N N N N N N -10.008 -6.624  18.266 1.909  3.963  -0.071 H30 ODN 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ODN C14 C13 SING N N 1  
ODN C13 C12 SING N N 2  
ODN C13 C17 SING N N 3  
ODN O2  C11 SING N N 4  
ODN C12 C11 SING N N 5  
ODN C12 C15 SING N N 6  
ODN C11 C10 SING N N 7  
ODN C15 C16 SING N N 8  
ODN C17 O3  DOUB N N 9  
ODN C17 C10 SING N N 10 
ODN O4  C18 SING N N 11 
ODN C10 C18 SING N N 12 
ODN C10 C9  SING N N 13 
ODN C16 C9  SING N N 14 
ODN C18 O1  SING N N 15 
ODN C18 C19 SING N N 16 
ODN O1  C8  SING N N 17 
ODN C9  C7  SING N N 18 
ODN O5  C19 SING N N 19 
ODN C8  C7  SING N N 20 
ODN C19 C6  SING N N 21 
ODN C7  C6  SING N N 22 
ODN C7  C   SING N N 23 
ODN C6  C3  SING N N 24 
ODN O   C   SING N N 25 
ODN C   C1  SING N N 26 
ODN C3  C4  SING N N 27 
ODN C3  C5  SING N N 28 
ODN C3  C2  SING N N 29 
ODN C1  C2  SING N N 30 
ODN O4  H1  SING N N 31 
ODN C8  H2  SING N N 32 
ODN C8  H3  SING N N 33 
ODN C19 H4  SING N N 34 
ODN O5  H5  SING N N 35 
ODN C6  H6  SING N N 36 
ODN C5  H7  SING N N 37 
ODN C5  H8  SING N N 38 
ODN C5  H9  SING N N 39 
ODN C4  H10 SING N N 40 
ODN C4  H11 SING N N 41 
ODN C4  H12 SING N N 42 
ODN C2  H13 SING N N 43 
ODN C2  H14 SING N N 44 
ODN C1  H15 SING N N 45 
ODN C1  H16 SING N N 46 
ODN C13 H17 SING N N 47 
ODN C14 H18 SING N N 48 
ODN C14 H19 SING N N 49 
ODN C14 H20 SING N N 50 
ODN C12 H21 SING N N 51 
ODN C11 H22 SING N N 52 
ODN O2  H23 SING N N 53 
ODN C15 H24 SING N N 54 
ODN C15 H25 SING N N 55 
ODN C16 H26 SING N N 56 
ODN C16 H27 SING N N 57 
ODN C9  H28 SING N N 58 
ODN C   H29 SING N N 59 
ODN O   H30 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ODN SMILES           ACDLabs              12.01 "O=C2C(C)C4CCC3C51C(C(O)C(O)(OC1)C23C4O)C(CCC5O)(C)C"                                                                                                                                   
ODN InChI            InChI                1.03  "InChI=1S/C20H30O6/c1-9-10-4-5-11-18-8-26-20(25,19(11,14(9)22)15(10)23)16(24)13(18)17(2,3)7-6-12(18)21/h9-13,15-16,21,23-25H,4-8H2,1-3H3/t9-,10+,11+,12+,13-,15-,16+,18-,19+,20-/m1/s1" 
ODN InChIKey         InChI                1.03  RWELMBQGCLVKOE-ZJOCIWLNSA-N                                                                                                                                                             
ODN SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1[C@@H]2CC[C@H]3[C@@]45CO[C@](O)([C@@H](O)[C@@H]4C(C)(C)CC[C@@H]5O)[C@]3([C@@H]2O)C1=O"                                                                                         
ODN SMILES           CACTVS               3.385 "C[CH]1[CH]2CC[CH]3[C]45CO[C](O)([CH](O)[CH]4C(C)(C)CC[CH]5O)[C]3([CH]2O)C1=O"                                                                                                          
ODN SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H]1[C@@H]2CC[C@H]3[C@@]45CO[C@@]([C@]3([C@@H]2O)C1=O)([C@H]([C@@H]4C(CC[C@@H]5O)(C)C)O)O"                                                                                         
ODN SMILES           "OpenEye OEToolkits" 1.9.2 "CC1C2CCC3C45COC(C3(C2O)C1=O)(C(C4C(CCC5O)(C)C)O)O"                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           ODN 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "(1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ODN "Create component"  2014-04-25 RCSB 
ODN "Modify descriptor" 2014-09-05 RCSB 
ODN "Initial release"   2014-10-15 RCSB 
ODN "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ODN 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
