data_N5N
#

_chem_comp.id                                   N5N
_chem_comp.name                                 
;2-[[(2S)-4-[[(3S)-1-carbamimidoylpiperidin-3-yl]methylamino]-2-(naphthalen-2-ylsulfonylamino)-4-oxidanylidene-butanoyl]
-cyclopropyl-amino]ethanoic acid
;

_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H34 N6 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "NAPSAGATRAN; Ro-46-6240"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-06-11
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       558.650
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    N5N
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4AX9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N5N  N1    N1    N  0  1  N  N  N  17.737  -12.975  21.127   1.451  -2.140  -0.544  N1    N5N   1  
N5N  C2    C2    C  0  1  N  N  N  18.683  -13.722  20.352   2.361  -3.092  -1.185  C2    N5N   2  
N5N  C3    C3    C  0  1  N  N  N  16.879  -13.615  22.019   1.332  -0.889  -1.031  C3    N5N   3  
N5N  C4    C4    C  0  1  N  N  N  17.659  -11.582  20.844   0.665  -2.549   0.622  C4    N5N   4  
N5N  C5    C5    C  0  1  N  N  N  20.070  -13.147  20.065   3.495  -3.668  -0.335  C5    N5N   5  
N5N  C6    C6    C  0  1  N  N  N  19.920  -14.328  20.977   2.304  -4.548  -0.718  C6    N5N   6  
N5N  C7    C7    C  0  1  N  N  S  16.946  -15.160  22.165   0.396   0.091  -0.372  C7    N5N   7  
N5N  O8    O8    O  0  1  N  N  N  16.058  -12.975  22.691   1.979  -0.552  -2.000  O8    N5N   8  
N5N  C9    C9    C  0  1  N  N  N  16.666  -11.627  19.679   1.445  -2.263   1.879  C9    N5N   9  
N5N  N10   N10   N  0  1  N  N  N  16.485  -15.646  23.411   0.776   1.456  -0.744  N10   N5N  10  
N5N  C11   C11   C  0  1  N  N  N  15.977  -15.656  21.055  -1.037  -0.184  -0.833  C11   N5N  11  
N5N  O12   O12   O  0  1  N  N  N  16.590  -10.557  18.856   0.919  -2.558   3.078  O12   N5N  12  
N5N  O13   O13   O  0  1  N  N  N  15.920  -12.553  19.365   2.545  -1.768   1.808  O13   N5N  13  
N5N  S14   S14   S  0  1  N  N  N  17.412  -16.746  24.138   1.765   2.339   0.247  S14   N5N  14  
N5N  C15   C15   C  0  1  N  N  N  14.484  -15.331  21.312  -1.987   0.714  -0.083  C15   N5N  15  
N5N  C16   C16   C  0  1  Y  N  N  18.743  -15.826  24.575   3.330   1.531   0.278  C16   N5N  16  
N5N  O17   O17   O  0  1  N  N  N  16.688  -17.072  25.291   1.971   3.587  -0.400  O17   N5N  17  
N5N  O18   O18   O  0  1  N  N  N  17.662  -17.684  23.135   1.228   2.223   1.557  O18   N5N  18  
N5N  N19   N19   N  0  1  N  N  N  13.887  -14.227  20.723  -3.311   0.647  -0.326  N19   N5N  19  
N5N  O20   O20   O  0  1  N  N  N  13.786  -16.085  22.030  -1.560   1.496   0.741  O20   N5N  20  
N5N  C21   C21   C  0  1  Y  N  N  20.040  -16.017  24.153   4.278   1.870  -0.639  C21   N5N  21  
N5N  C22   C22   C  0  1  Y  N  N  18.475  -14.750  25.465   3.581   0.558   1.243  C22   N5N  22  
N5N  C23   C23   C  0  1  N  N  N  12.499  -13.898  20.899  -4.234   1.520   0.404  C23   N5N  23  
N5N  C24   C24   C  0  1  Y  N  N  21.057  -15.140  24.618   5.528   1.227  -0.617  C24   N5N  24  
N5N  C25   C25   C  0  1  Y  N  N  19.433  -13.899  25.925   4.780  -0.086   1.294  C25   N5N  25  
N5N  C26   C26   C  0  1  N  N  S  12.190  -12.450  21.333  -5.667   1.245  -0.057  C26   N5N  26  
N5N  C27   C27   C  0  1  Y  N  N  20.748  -14.080  25.510   5.781   0.234   0.362  C27   N5N  27  
N5N  C28   C28   C  0  1  Y  N  N  22.399  -15.294  24.212   6.531   1.550  -1.547  C28   N5N  28  
N5N  C29   C29   C  0  1  N  N  N  12.576  -12.316  22.809  -6.065  -0.182   0.332  C29   N5N  29  
N5N  C30   C30   C  0  1  N  N  N  12.971  -11.434  20.502  -6.619   2.237   0.615  C30   N5N  30  
N5N  C31   C31   C  0  1  Y  N  N  21.761  -13.202  25.970   7.030  -0.410   0.383  C31   N5N  31  
N5N  C32   C32   C  0  1  Y  N  N  23.363  -14.435  24.658   7.729   0.906  -1.495  C32   N5N  32  
N5N  N33   N33   N  0  1  N  N  N  12.438  -10.966  23.338  -7.482  -0.385  -0.000  N33   N5N  33  
N5N  C34   C34   C  0  1  N  N  N  12.688  -10.032  21.030  -8.048   1.985   0.130  C34   N5N  34  
N5N  C35   C35   C  0  1  Y  N  N  23.047  -13.379  25.547   7.978  -0.071  -0.533  C35   N5N  35  
N5N  C36   C36   C  0  1  N  N  N  13.038   -9.916  22.512  -8.473   0.567   0.521  C36   N5N  36  
N5N  C37   C37   C  0  1  N  N  N  11.225  -10.771  24.116  -7.872  -1.444  -0.784  C37   N5N  37  
N5N  N38   N38   N  0  1  N  N  N  10.460  -11.953  24.333  -9.209  -1.688  -0.994  N38   N5N  38  
N5N  N39   N39   N  0  1  N  N  N  10.886   -9.605  24.572  -6.975  -2.218  -1.328  N39   N5N  39  
N5N  H2    H2    H  0  1  N  N  N  18.262  -14.309  19.522   2.565  -2.910  -2.240  H2    N5N  40  
N5N  H41C  H41C  H  0  0  N  N  N  17.267  -11.009  21.698  -0.273  -1.994   0.642  H41C  N5N  41  
N5N  H42C  H42C  H  0  0  N  N  N  18.632  -11.168  20.540   0.453  -3.617   0.561  H42C  N5N  42  
N5N  H51C  H51C  H  0  0  N  N  N  20.523  -13.274  19.071   4.446  -3.864  -0.830  H51C  N5N  43  
N5N  H52C  H52C  H  0  0  N  N  N  20.355  -12.167  20.476   3.564  -3.337   0.702  H52C  N5N  44  
N5N  H61C  H61C  H  0  0  N  N  N  20.101  -14.213  22.056   1.589  -4.797   0.067  H61C  N5N  45  
N5N  H62C  H62C  H  0  0  N  N  N  20.268  -15.319  20.651   2.471  -5.324  -1.465  H62C  N5N  46  
N5N  H7    H7    H  0  1  N  N  N  17.966  -15.508  21.946   0.457  -0.021   0.711  H7    N5N  47  
N5N  H10   H10   H  0  1  N  N  N  16.398  -14.865  24.029   0.449   1.842  -1.572  H10   N5N  48  
N5N  H111  H111  H  0  0  N  N  N  16.272  -15.185  20.106  -1.118   0.014  -1.902  H111  N5N  49  
N5N  H112  H112  H  0  0  N  N  N  16.081  -16.748  20.971  -1.289  -1.225  -0.636  H112  N5N  50  
N5N  H12   H12   H  0  1  N  N  N  15.955  -10.729  18.170   1.457  -2.356   3.856  H12   N5N  51  
N5N  H19   H19   H  0  1  N  N  N  14.449  -13.631  20.149  -3.652   0.022  -0.984  H19   N5N  52  
N5N  H21   H21   H  0  1  N  N  N  20.281  -16.824  23.477   4.071   2.628  -1.379  H21   N5N  53  
N5N  H22   H22   H  0  1  N  N  N  17.457  -14.600  25.794   2.814   0.311   1.961  H22   N5N  54  
N5N  H231  H231  H  0  0  N  N  N  11.988  -14.077  19.942  -4.152   1.322   1.473  H231  N5N  55  
N5N  H232  H232  H  0  0  N  N  N  12.089  -14.572  21.665  -3.982   2.562   0.207  H232  N5N  56  
N5N  H25   H25   H  0  1  N  N  N  19.176  -13.097  26.601   4.960  -0.837   2.049  H25   N5N  57  
N5N  H26   H26   H  0  1  N  N  N  11.112  -12.262  21.220  -5.728   1.358  -1.139  H26   N5N  58  
N5N  H28   H28   H  0  1  N  N  N  22.667  -16.098  23.543   6.352   2.305  -2.298  H28   N5N  59  
N5N  H291  H291  H  0  0  N  N  N  11.931  -12.985  23.397  -5.454  -0.895  -0.221  H291  N5N  60  
N5N  H292  H292  H  0  0  N  N  N  13.625  -12.626  22.921  -5.917  -0.323   1.403  H292  N5N  61  
N5N  H301  H301  H  0  0  N  N  N  14.048  -11.646  20.579  -6.574   2.107   1.697  H301  N5N  62  
N5N  H302  H302  H  0  0  N  N  N  12.658  -11.501  19.450  -6.322   3.255   0.360  H302  N5N  63  
N5N  H31   H31   H  0  1  N  N  N  21.518  -12.399  26.650   7.238  -1.168   1.123  H31   N5N  64  
N5N  H32   H32   H  0  1  N  N  N  24.383  -14.563  24.327   8.498   1.156  -2.211  H32   N5N  65  
N5N  H341  H341  H  0  0  N  N  N  13.289   -9.307  20.462  -8.722   2.707   0.591  H341  N5N  66  
N5N  H342  H342  H  0  0  N  N  N  11.620   -9.807  20.896  -8.087   2.091  -0.955  H342  N5N  67  
N5N  H35   H35   H  0  1  N  N  N  23.824  -12.713  25.891   8.937  -0.566  -0.514  H35   N5N  68  
N5N  H361  H361  H  0  0  N  N  N  12.685   -8.941  22.878  -9.451   0.347   0.092  H361  N5N  69  
N5N  H362  H362  H  0  0  N  N  N  14.132   -9.973  22.617  -8.521   0.486   1.607  H362  N5N  70  
N5N  H381  H381  H  0  0  N  N  N   9.612  -11.910  24.862  -9.874  -1.072  -0.650  H381  N5N  71  
N5N  H382  H382  H  0  0  N  N  N  10.771  -12.826  23.957  -9.487  -2.476  -1.487  H382  N5N  72  
N5N  H39   H39   H  0  1  N  N  N  10.031   -9.639  25.089  -7.251  -2.966  -1.881  H39   N5N  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N5N  N1   C2    SING  N  N   1  
N5N  N1   C3    SING  N  N   2  
N5N  N1   C4    SING  N  N   3  
N5N  C2   C5    SING  N  N   4  
N5N  C2   C6    SING  N  N   5  
N5N  C3   C7    SING  N  N   6  
N5N  C3   O8    DOUB  N  N   7  
N5N  C4   C9    SING  N  N   8  
N5N  C5   C6    SING  N  N   9  
N5N  C7   N10   SING  N  N  10  
N5N  C7   C11   SING  N  N  11  
N5N  C9   O12   SING  N  N  12  
N5N  C9   O13   DOUB  N  N  13  
N5N  N10  S14   SING  N  N  14  
N5N  C11  C15   SING  N  N  15  
N5N  S14  C16   SING  N  N  16  
N5N  S14  O17   DOUB  N  N  17  
N5N  S14  O18   DOUB  N  N  18  
N5N  C15  N19   SING  N  N  19  
N5N  C15  O20   DOUB  N  N  20  
N5N  C16  C21   SING  Y  N  21  
N5N  C16  C22   DOUB  Y  N  22  
N5N  N19  C23   SING  N  N  23  
N5N  C21  C24   DOUB  Y  N  24  
N5N  C22  C25   SING  Y  N  25  
N5N  C23  C26   SING  N  N  26  
N5N  C24  C27   SING  Y  N  27  
N5N  C24  C28   SING  Y  N  28  
N5N  C25  C27   DOUB  Y  N  29  
N5N  C26  C29   SING  N  N  30  
N5N  C26  C30   SING  N  N  31  
N5N  C27  C31   SING  Y  N  32  
N5N  C28  C32   DOUB  Y  N  33  
N5N  C29  N33   SING  N  N  34  
N5N  C30  C34   SING  N  N  35  
N5N  C31  C35   DOUB  Y  N  36  
N5N  C32  C35   SING  Y  N  37  
N5N  N33  C36   SING  N  N  38  
N5N  N33  C37   SING  N  N  39  
N5N  C34  C36   SING  N  N  40  
N5N  C37  N38   SING  N  N  41  
N5N  C37  N39   DOUB  N  N  42  
N5N  C2   H2    SING  N  N  43  
N5N  C4   H41C  SING  N  N  44  
N5N  C4   H42C  SING  N  N  45  
N5N  C5   H51C  SING  N  N  46  
N5N  C5   H52C  SING  N  N  47  
N5N  C6   H61C  SING  N  N  48  
N5N  C6   H62C  SING  N  N  49  
N5N  C7   H7    SING  N  N  50  
N5N  N10  H10   SING  N  N  51  
N5N  C11  H111  SING  N  N  52  
N5N  C11  H112  SING  N  N  53  
N5N  O12  H12   SING  N  N  54  
N5N  N19  H19   SING  N  N  55  
N5N  C21  H21   SING  N  N  56  
N5N  C22  H22   SING  N  N  57  
N5N  C23  H231  SING  N  N  58  
N5N  C23  H232  SING  N  N  59  
N5N  C25  H25   SING  N  N  60  
N5N  C26  H26   SING  N  N  61  
N5N  C28  H28   SING  N  N  62  
N5N  C29  H291  SING  N  N  63  
N5N  C29  H292  SING  N  N  64  
N5N  C30  H301  SING  N  N  65  
N5N  C30  H302  SING  N  N  66  
N5N  C31  H31   SING  N  N  67  
N5N  C32  H32   SING  N  N  68  
N5N  C34  H341  SING  N  N  69  
N5N  C34  H342  SING  N  N  70  
N5N  C35  H35   SING  N  N  71  
N5N  C36  H361  SING  N  N  72  
N5N  C36  H362  SING  N  N  73  
N5N  N38  H381  SING  N  N  74  
N5N  N38  H382  SING  N  N  75  
N5N  N39  H39   SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N5N  SMILES            ACDLabs               12.01  "O=C(O)CN(C(=O)C(NS(=O)(=O)c2cc1ccccc1cc2)CC(=O)NCC3CCCN(C(=[N@H])N)C3)C4CC4"  
N5N  InChI             InChI                 1.03   "InChI=1S/C26H34N6O6S/c27-26(28)31-11-3-4-17(15-31)14-29-23(33)13-22(25(36)32(16-24(34)35)20-8-9-20)30-39(37,38)21-10-7-18-5-1-2-6-19(18)12-21/h1-2,5-7,10,12,17,20,22,30H,3-4,8-9,11,13-16H2,(H3,27,28)(H,29,33)(H,34,35)/t17-,22-/m0/s1"  
N5N  InChIKey          InChI                 1.03   BYDKEYCXCIVOOV-JTSKRJEESA-N  
N5N  SMILES_CANONICAL  CACTVS                3.370  "NC(=N)N1CCC[C@@H](CNC(=O)C[C@H](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N(CC(O)=O)C4CC4)C1"  
N5N  SMILES            CACTVS                3.370  "NC(=N)N1CCC[CH](CNC(=O)C[CH](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N(CC(O)=O)C4CC4)C1"  
N5N  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "[H]/N=C(/N)\N1CCC[C@H](C1)CNC(=O)C[C@@H](C(=O)N(CC(=O)O)C2CC2)NS(=O)(=O)c3ccc4ccccc4c3"  
N5N  SMILES            "OpenEye OEToolkits"  1.7.6  "c1ccc2cc(ccc2c1)S(=O)(=O)NC(CC(=O)NCC3CCCN(C3)C(=N)N)C(=O)N(CC(=O)O)C4CC4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N5N  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{[(3S)-1-carbamimidoylpiperidin-3-yl]methyl}-N~2~-(naphthalen-2-ylsulfonyl)-L-asparaginyl-N-cyclopropylglycine"  
N5N  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "2-[[(2S)-4-[[(3S)-1-carbamimidoylpiperidin-3-yl]methylamino]-2-(naphthalen-2-ylsulfonylamino)-4-oxidanylidene-butanoyl]-cyclopropyl-amino]ethanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N5N  "Create component"    2012-06-11  EBI   
N5N  "Other modification"  2014-05-09  EBI   
N5N  "Modify synonyms"     2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  N5N  NAPSAGATRAN  ?  ?  
2  N5N  Ro-46-6240   ?  ?  
##
