data_L5N
#

_chem_comp.id                                   L5N
_chem_comp.name                                 "4-[[4-[(5-chloranylthiophen-2-yl)carbonylamino]-1,3-bis(oxidanylidene)isoindol-2-yl]methyl]benzoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H13 Cl N2 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-22
_chem_comp.pdbx_modified_date                   2020-06-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       440.856
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L5N
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6SBU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L5N  CAT  C1   C   0  1  Y  N  N  25.396  176.666  27.674  -3.306  -1.572  -1.039  CAT  L5N   1  
L5N  CAX  C2   C   0  1  Y  N  N  24.637  176.992  28.805  -4.033  -2.411  -0.221  CAX  L5N   2  
L5N  CBA  C3   C   0  1  Y  N  N  23.506  176.244  29.119  -5.217  -1.956   0.365  CBA  L5N   3  
L5N  CBB  C4   C   0  1  N  N  N  22.647  176.549  30.329  -6.000  -2.849   1.243  CBB  L5N   4  
L5N  OBD  O1   O   0  1  N  N  N  21.463  176.172  30.185  -5.616  -3.981   1.457  OBD  L5N   5  
L5N  OBC  O2   O   0  1  N  N  N  23.139  177.114  31.349  -7.141  -2.407   1.807  OBC  L5N   6  
L5N  CAY  C5   C   0  1  Y  N  N  23.128  175.190  28.303  -5.655  -0.654   0.117  CAY  L5N   7  
L5N  CAU  C6   C   0  1  Y  N  N  23.877  174.871  27.179  -4.918   0.174  -0.704  CAU  L5N   8  
L5N  CAQ  C7   C   0  1  Y  N  N  25.011  175.606  26.861  -3.744  -0.281  -1.276  CAQ  L5N   9  
L5N  CAN  C8   C   0  1  N  N  N  25.803  175.261  25.606  -2.944   0.630  -2.172  CAN  L5N  10  
L5N  NAI  N1   N   0  1  N  N  N  26.474  173.942  25.665  -1.975   1.378  -1.368  NAI  L5N  11  
L5N  CAE  C9   C   0  1  N  N  N  26.128  172.848  24.976  -2.221   2.570  -0.794  CAE  L5N  12  
L5N  OAK  O3   O   0  1  N  N  N  25.157  172.750  24.226  -3.266   3.186  -0.858  OAK  L5N  13  
L5N  CAD  C10  C   0  1  N  N  N  27.553  173.654  26.391  -0.724   0.961  -1.101  CAD  L5N  14  
L5N  OAJ  O4   O   0  1  N  N  N  28.176  174.369  27.165  -0.227  -0.079  -1.484  OAJ  L5N  15  
L5N  CAA  C11  C   0  1  Y  N  N  27.917  172.360  26.181  -0.057   1.977  -0.268  CAA  L5N  16  
L5N  CAB  C12  C   0  1  Y  N  N  27.015  171.822  25.295  -1.007   3.002  -0.070  CAB  L5N  17  
L5N  CAF  C13  C   0  1  Y  N  N  27.162  170.490  24.933  -0.676   4.112   0.686  CAF  L5N  18  
L5N  CAL  C14  C   0  1  Y  N  N  28.204  169.737  25.459   0.590   4.216   1.246  CAL  L5N  19  
L5N  CAH  C15  C   0  1  Y  N  N  29.085  170.318  26.362   1.526   3.222   1.056  CAH  L5N  20  
L5N  CAC  C16  C   0  1  Y  N  N  28.937  171.642  26.729   1.210   2.091   0.301  CAC  L5N  21  
L5N  NAG  N2   N   0  1  N  N  N  29.699  172.333  27.568   2.153   1.086   0.117  NAG  L5N  22  
L5N  CAM  C17  C   0  1  N  N  N  30.795  171.894  28.170   3.145   0.921   1.014  CAM  L5N  23  
L5N  OAP  O5   O   0  1  N  N  N  31.286  170.780  28.122   3.159   1.583   2.035  OAP  L5N  24  
L5N  CAO  C18  C   0  1  Y  N  N  31.456  172.887  29.039   4.206  -0.055   0.760  CAO  L5N  25  
L5N  CAS  C19  C   0  1  Y  N  N  30.907  174.050  29.413   5.262  -0.313   1.589  CAS  L5N  26  
L5N  CAW  C20  C   0  1  Y  N  N  31.712  174.759  30.209   6.111  -1.279   1.106  CAW  L5N  27  
L5N  CAV  C21  C   0  1  Y  N  N  32.867  174.127  30.440   5.764  -1.797  -0.081  CAV  L5N  28  
L5N  CLA  CL1  CL  0  0  N  N  N  34.079  174.800  31.437   6.658  -3.030  -0.915  CLA  L5N  29  
L5N  SAR  S1   S   0  1  Y  N  N  32.986  172.619  29.663   4.323  -1.089  -0.658  SAR  L5N  30  
L5N  H1   H1   H   0  1  N  N  N  26.280  177.238  27.434  -2.391  -1.922  -1.493  H1   L5N  31  
L5N  H2   H2   H   0  1  N  N  N  24.929  177.822  29.432  -3.689  -3.417  -0.033  H2   L5N  32  
L5N  H3   H3   H   0  1  N  N  N  22.465  177.216  32.011  -7.620  -3.027   2.374  H3   L5N  33  
L5N  H4   H4   H   0  1  N  N  N  22.246  174.614  28.543  -6.570  -0.296   0.567  H4   L5N  34  
L5N  H5   H5   H   0  1  N  N  N  23.576  174.047  26.549  -5.257   1.182  -0.896  H5   L5N  35  
L5N  H6   H6   H   0  1  N  N  N  26.571  176.034  25.457  -2.416   0.034  -2.917  H6   L5N  36  
L5N  H7   H7   H   0  1  N  N  N  25.113  175.261  24.750  -3.615   1.327  -2.674  H7   L5N  37  
L5N  H8   H8   H   0  1  N  N  N  26.466  170.039  24.242  -1.402   4.897   0.841  H8   L5N  38  
L5N  H9   H9   H   0  1  N  N  N  28.329  168.705  25.167   0.845   5.085   1.836  H9   L5N  39  
L5N  H10  H10  H   0  1  N  N  N  29.890  169.732  26.780   2.507   3.316   1.497  H10  L5N  40  
L5N  H11  H11  H   0  1  N  N  N  29.420  173.273  27.764   2.096   0.504  -0.657  H11  L5N  41  
L5N  H12  H12  H   0  1  N  N  N  29.925  174.377  29.106   5.414   0.193   2.532  H12  L5N  42  
L5N  H13  H13  H   0  1  N  N  N  31.460  175.727  30.617   6.993  -1.597   1.642  H13  L5N  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L5N  OAK  CAE  DOUB  N  N   1  
L5N  CAF  CAB  DOUB  Y  N   2  
L5N  CAF  CAL  SING  Y  N   3  
L5N  CAE  CAB  SING  N  N   4  
L5N  CAE  NAI  SING  N  N   5  
L5N  CAB  CAA  SING  Y  N   6  
L5N  CAL  CAH  DOUB  Y  N   7  
L5N  CAN  NAI  SING  N  N   8  
L5N  CAN  CAQ  SING  N  N   9  
L5N  NAI  CAD  SING  N  N  10  
L5N  CAA  CAD  SING  N  N  11  
L5N  CAA  CAC  DOUB  Y  N  12  
L5N  CAH  CAC  SING  Y  N  13  
L5N  CAD  OAJ  DOUB  N  N  14  
L5N  CAC  NAG  SING  N  N  15  
L5N  CAQ  CAU  DOUB  Y  N  16  
L5N  CAQ  CAT  SING  Y  N  17  
L5N  CAU  CAY  SING  Y  N  18  
L5N  NAG  CAM  SING  N  N  19  
L5N  CAT  CAX  DOUB  Y  N  20  
L5N  OAP  CAM  DOUB  N  N  21  
L5N  CAM  CAO  SING  N  N  22  
L5N  CAY  CBA  DOUB  Y  N  23  
L5N  CAX  CBA  SING  Y  N  24  
L5N  CAO  CAS  DOUB  Y  N  25  
L5N  CAO  SAR  SING  Y  N  26  
L5N  CBA  CBB  SING  N  N  27  
L5N  CAS  CAW  SING  Y  N  28  
L5N  SAR  CAV  SING  Y  N  29  
L5N  OBD  CBB  DOUB  N  N  30  
L5N  CAW  CAV  DOUB  Y  N  31  
L5N  CBB  OBC  SING  N  N  32  
L5N  CAV  CLA  SING  N  N  33  
L5N  CAT  H1   SING  N  N  34  
L5N  CAX  H2   SING  N  N  35  
L5N  OBC  H3   SING  N  N  36  
L5N  CAY  H4   SING  N  N  37  
L5N  CAU  H5   SING  N  N  38  
L5N  CAN  H6   SING  N  N  39  
L5N  CAN  H7   SING  N  N  40  
L5N  CAF  H8   SING  N  N  41  
L5N  CAL  H9   SING  N  N  42  
L5N  CAH  H10  SING  N  N  43  
L5N  NAG  H11  SING  N  N  44  
L5N  CAS  H12  SING  N  N  45  
L5N  CAW  H13  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L5N  InChI             InChI                 1.03   "InChI=1S/C21H13ClN2O5S/c22-16-9-8-15(30-16)18(25)23-14-3-1-2-13-17(14)20(27)24(19(13)26)10-11-4-6-12(7-5-11)21(28)29/h1-9H,10H2,(H,23,25)(H,28,29)"  
L5N  InChIKey          InChI                 1.03   IOFCJSIYHLICRV-UHFFFAOYSA-N  
L5N  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)c1ccc(CN2C(=O)c3cccc(NC(=O)c4sc(Cl)cc4)c3C2=O)cc1"  
L5N  SMILES            CACTVS                3.385  "OC(=O)c1ccc(CN2C(=O)c3cccc(NC(=O)c4sc(Cl)cc4)c3C2=O)cc1"  
L5N  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2c(c(c1)NC(=O)c3ccc(s3)Cl)C(=O)N(C2=O)Cc4ccc(cc4)C(=O)O"  
L5N  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2c(c(c1)NC(=O)c3ccc(s3)Cl)C(=O)N(C2=O)Cc4ccc(cc4)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          L5N
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[[4-[(5-chloranylthiophen-2-yl)carbonylamino]-1,3-bis(oxidanylidene)isoindol-2-yl]methyl]benzoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L5N  "Create component"  2019-07-22  PDBE  
L5N  "Initial release"   2020-06-10  RCSB  
##
