data_KVN
#

_chem_comp.id                                   KVN
_chem_comp.name                                 "(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-(5-phenyl-1,2,3,4-tetrazol-2-yl)oxane-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H16 N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-01
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       308.290
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KVN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6S52
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KVN  C7     C1   C  0  1  Y  N  N  37.281  25.154  31.940  -4.764  -0.460   0.977  C7     KVN   1  
KVN  C8     C2   C  0  1  Y  N  N  37.547  25.734  33.170  -6.106  -0.379   0.664  C8     KVN   2  
KVN  N1     N1   N  0  1  Y  N  N  34.666  23.371  28.630  -0.262  -0.120   0.213  N1     KVN   3  
KVN  C4     C3   C  0  1  Y  N  N  35.692  24.193  30.297  -2.362  -0.207   0.355  C4     KVN   4  
KVN  C6     C4   C  0  1  Y  N  N  35.979  24.806  31.594  -3.807  -0.121   0.023  C6     KVN   5  
KVN  C9     C5   C  0  1  Y  N  N  36.522  25.992  34.050  -6.500   0.032  -0.597  C9     KVN   6  
KVN  C10    C6   C  0  1  Y  N  N  35.231  25.649  33.719  -5.554   0.365  -1.549  C10    KVN   7  
KVN  C11    C7   C  0  1  Y  N  N  34.957  25.058  32.498  -4.210   0.298  -1.242  C11    KVN   8  
KVN  "O5'"  O1   O  0  1  N  N  N  33.498  21.494  28.018   1.913  -1.030   0.052  "O5'"  KVN   9  
KVN  "C5'"  C8   C  0  1  N  N  R  32.352  20.944  27.369   3.254  -0.947  -0.433  "C5'"  KVN  10  
KVN  "C4'"  C9   C  0  1  N  N  S  32.506  21.103  25.832   3.931   0.296   0.152  "C4'"  KVN  11  
KVN  "C3'"  C10  C  0  1  N  N  S  32.788  22.548  25.447   3.117   1.537  -0.226  "C3'"  KVN  12  
KVN  "C2'"  C11  C  0  1  N  N  R  33.927  23.126  26.296   1.681   1.365   0.279  "C2'"  KVN  13  
KVN  "C1'"  C12  C  0  1  N  N  R  33.613  22.876  27.767   1.091   0.082  -0.311  "C1'"  KVN  14  
KVN  "O2'"  O2   O  0  1  N  N  N  34.094  24.536  26.119   0.894   2.485  -0.130  "O2'"  KVN  15  
KVN  "O3'"  O3   O  0  1  N  N  N  33.110  22.614  24.052   3.701   2.694   0.377  "O3'"  KVN  16  
KVN  "O4'"  O4   O  0  1  N  N  N  31.316  20.686  25.166   5.254   0.412  -0.377  "O4'"  KVN  17  
KVN  "C6'"  C13  C  0  1  N  N  N  32.230  19.518  27.866   4.029  -2.196  -0.010  "C6'"  KVN  18  
KVN  "O6'"  O5   O  0  1  N  N  N  33.074  18.604  27.169   3.466  -3.344  -0.649  "O6'"  KVN  19  
KVN  N5     N2   N  0  1  Y  N  N  34.480  23.882  29.864  -1.353   0.081  -0.443  N5     KVN  20  
KVN  N3     N3   N  0  1  Y  N  N  36.623  23.876  29.366  -1.830  -0.599   1.521  N3     KVN  21  
KVN  N2     N4   N  0  1  Y  N  N  35.980  23.357  28.341  -0.548  -0.530   1.399  N2     KVN  22  
KVN  H1     H1   H  0  1  N  N  N  38.088  24.971  31.246  -4.457  -0.781   1.961  H1     KVN  23  
KVN  H2     H2   H  0  1  N  N  N  38.563  25.984  33.439  -6.849  -0.638   1.403  H2     KVN  24  
KVN  H3     H3   H  0  1  N  N  N  36.730  26.463  34.999  -7.551   0.094  -0.838  H3     KVN  25  
KVN  H4     H4   H  0  1  N  N  N  34.428  25.842  34.415  -5.867   0.685  -2.532  H4     KVN  26  
KVN  H5     H5   H  0  1  N  N  N  33.941  24.791  32.247  -3.472   0.562  -1.985  H5     KVN  27  
KVN  H6     H6   H  0  1  N  N  N  31.453  21.497  27.678   3.244  -0.877  -1.521  H6     KVN  28  
KVN  H7     H7   H  0  1  N  N  N  33.354  20.482  25.506   3.979   0.208   1.237  H7     KVN  29  
KVN  H8     H8   H  0  1  N  N  N  31.882  23.140  25.642   3.111   1.653  -1.310  H8     KVN  30  
KVN  H9     H9   H  0  1  N  N  N  34.859  22.601  26.039   1.683   1.299   1.367  H9     KVN  31  
KVN  H10    H10  H  0  1  N  N  N  32.669  23.384  28.013   1.052   0.165  -1.397  H10    KVN  32  
KVN  H11    H11  H  0  1  N  N  N  34.809  24.842  26.665  -0.029   2.443   0.156  H11    KVN  33  
KVN  H12    H12  H  0  1  N  N  N  33.286  23.515  23.810   3.235   3.518   0.180  H12    KVN  34  
KVN  H13    H13  H  0  1  N  N  N  31.124  19.784  25.395   5.743   1.179  -0.048  H13    KVN  35  
KVN  H14    H14  H  0  1  N  N  N  31.186  19.193  27.743   5.074  -2.093  -0.303  H14    KVN  36  
KVN  H15    H15  H  0  1  N  N  N  32.497  19.496  28.933   3.965  -2.315   1.071  H15    KVN  37  
KVN  H16    H16  H  0  1  N  N  N  32.955  17.730  27.522   3.908  -4.175  -0.426  H16    KVN  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KVN  "O3'"  "C3'"  SING  N  N   1  
KVN  "O4'"  "C4'"  SING  N  N   2  
KVN  "C3'"  "C4'"  SING  N  N   3  
KVN  "C3'"  "C2'"  SING  N  N   4  
KVN  "C4'"  "C5'"  SING  N  N   5  
KVN  "O2'"  "C2'"  SING  N  N   6  
KVN  "C2'"  "C1'"  SING  N  N   7  
KVN  "O6'"  "C6'"  SING  N  N   8  
KVN  "C5'"  "C6'"  SING  N  N   9  
KVN  "C5'"  "O5'"  SING  N  N  10  
KVN  "C1'"  "O5'"  SING  N  N  11  
KVN  "C1'"  N1     SING  N  N  12  
KVN  N2     N1     SING  Y  N  13  
KVN  N2     N3     DOUB  Y  N  14  
KVN  N1     N5     SING  Y  N  15  
KVN  N3     C4     SING  Y  N  16  
KVN  N5     C4     DOUB  Y  N  17  
KVN  C4     C6     SING  N  N  18  
KVN  C6     C7     DOUB  Y  N  19  
KVN  C6     C11    SING  Y  N  20  
KVN  C7     C8     SING  Y  N  21  
KVN  C11    C10    DOUB  Y  N  22  
KVN  C8     C9     DOUB  Y  N  23  
KVN  C10    C9     SING  Y  N  24  
KVN  C7     H1     SING  N  N  25  
KVN  C8     H2     SING  N  N  26  
KVN  C9     H3     SING  N  N  27  
KVN  C10    H4     SING  N  N  28  
KVN  C11    H5     SING  N  N  29  
KVN  "C5'"  H6     SING  N  N  30  
KVN  "C4'"  H7     SING  N  N  31  
KVN  "C3'"  H8     SING  N  N  32  
KVN  "C2'"  H9     SING  N  N  33  
KVN  "C1'"  H10    SING  N  N  34  
KVN  "O2'"  H11    SING  N  N  35  
KVN  "O3'"  H12    SING  N  N  36  
KVN  "O4'"  H13    SING  N  N  37  
KVN  "C6'"  H14    SING  N  N  38  
KVN  "C6'"  H15    SING  N  N  39  
KVN  "O6'"  H16    SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KVN  InChI             InChI                 1.03   "InChI=1S/C13H16N4O5/c18-6-8-9(19)10(20)11(21)13(22-8)17-15-12(14-16-17)7-4-2-1-3-5-7/h1-5,8-11,13,18-21H,6H2/t8-,9-,10+,11-,13-/m1/s1"  
KVN  InChIKey          InChI                 1.03   DNXJDWRGEZLNKO-BZNQNGANSA-N  
KVN  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)n2nnc(n2)c3ccccc3"  
KVN  SMILES            CACTVS                3.385  "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)n2nnc(n2)c3ccccc3"  
KVN  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)c2nnn(n2)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O"  
KVN  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)c2nnn(n2)C3C(C(C(C(O3)CO)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          KVN
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-(5-phenyl-1,2,3,4-tetrazol-2-yl)oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KVN  "Create component"  2019-07-01  EBI   
KVN  "Initial release"   2020-02-19  RCSB  
##
