data_K1N
# 
_chem_comp.id                                    K1N 
_chem_comp.name                                  
;(3~{S},7~{R},10~{R},13~{S})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H40 Cl N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-04-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        678.174 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K1N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6RD2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K1N CAM C1  C  0 1 N N N N N N 23.833 22.719 25.268 -5.904 3.744  -0.950 CAM  K1N 1  
K1N CAS C2  C  0 1 N N N N N N 26.907 24.584 19.319 -1.102 -1.502 2.817  CAS  K1N 2  
K1N CAU C3  C  0 1 N N N N N N 27.592 26.459 20.597 -0.509 0.257  1.165  CAU  K1N 3  
K1N CAK C4  C  0 1 N N N N N N 23.635 23.550 24.002 -5.130 2.472  -0.718 CAK  K1N 4  
K1N CAQ C5  C  0 1 N N N N N N 24.758 24.512 20.276 -3.263 -1.725 1.791  CAQ  K1N 5  
K1N CAR C6  C  0 1 N N N N N N 25.790 23.667 19.499 -1.950 -2.518 2.007  CAR  K1N 6  
K1N CAT C7  C  0 1 N N R N N N 27.073 25.138 20.713 -1.516 -0.146 2.210  CAT  K1N 7  
K1N N   N1  N  0 1 N N N N N N 23.964 24.824 24.100 -5.624 1.522  0.100  N    K1N 8  
K1N CA  C8  C  0 1 N N S N N N 23.908 25.635 22.881 -4.872 0.285  0.326  CA   K1N 9  
K1N C   C9  C  0 1 N N N N N N 25.381 25.717 22.383 -3.528 0.616  0.923  C    K1N 10 
K1N O   O1  O  0 1 N N N N N N 26.274 26.219 23.070 -3.074 1.735  0.810  O    K1N 11 
K1N CB  C10 C  0 1 N N N N N N 23.419 27.065 23.066 -4.673 -0.441 -1.006 CB   K1N 12 
K1N CG  C11 C  0 1 Y N N N N N 22.003 27.181 23.401 -6.011 -0.880 -1.543 CG   K1N 13 
K1N CD1 C12 C  0 1 Y N N N N N 20.939 27.022 22.528 -6.616 -2.021 -1.045 CD1  K1N 14 
K1N CD2 C13 C  0 1 Y N N N N N 21.670 27.538 24.675 -6.636 -0.141 -2.529 CD2  K1N 15 
K1N CE1 C14 C  0 1 Y N N N N N 19.598 27.187 22.862 -7.844 -2.424 -1.539 CE1  K1N 16 
K1N CE2 C15 C  0 1 Y N N N N N 20.339 27.615 25.070 -7.864 -0.544 -3.022 CE2  K1N 17 
K1N CZ  C16 C  0 1 Y N N N N N 19.301 27.519 24.172 -8.466 -1.687 -2.529 CZ   K1N 18 
K1N CAX C17 C  0 1 N N N N N N 27.900 24.290 21.543 -1.608 0.883  3.298  CAX  K1N 19 
K1N CAY C18 C  0 1 N N N N N N 29.266 24.563 21.658 -0.639 1.702  3.591  CAY  K1N 20 
K1N CAZ C19 C  0 1 N N S N N N 29.865 25.625 20.959 0.663  1.673  2.845  CAZ  K1N 21 
K1N CBA C20 C  0 1 N N N N N N 30.869 26.428 21.802 1.212  3.105  2.652  CBA  K1N 22 
K1N CBB C21 C  0 1 N N N N N N 31.064 27.523 20.793 2.117  2.909  1.403  CBB  K1N 23 
K1N CBC C22 C  0 1 N N S N N N 29.612 27.958 20.499 1.314  1.895  0.556  CBC  K1N 24 
K1N CBD C23 C  0 1 N N N N N N 29.506 28.461 19.165 2.253  0.916  -0.101 CBD  K1N 25 
K1N CBG C24 C  0 1 N N S N N N 29.720 30.380 17.627 4.238  0.557  -1.586 CBG  K1N 26 
K1N CBH C25 C  0 1 N N N N N N 30.453 29.749 16.588 4.701  -0.614 -0.847 CBH  K1N 27 
K1N CBK C26 C  0 1 N N S N N N 30.907 29.478 14.159 6.378  -2.224 -0.001 CBK  K1N 28 
K1N CBL C27 C  0 1 N N N N N N 32.208 30.061 13.930 6.335  -1.582 1.362  CBL  K1N 29 
K1N CBN C28 C  0 1 N N N N N N 29.877 29.812 13.077 7.831  -2.546 -0.377 CBN  K1N 30 
K1N CBO C29 C  0 1 N N N N N N 29.532 31.260 13.433 8.122  -1.689 -1.625 CBO  K1N 31 
K1N CBP C30 C  0 1 N N R N N N 29.281 31.115 14.908 6.712  -1.362 -2.183 CBP  K1N 32 
K1N CBQ C31 C  0 1 N N N N N N 29.451 32.381 15.538 6.818  -0.137 -3.008 CBQ  K1N 33 
K1N CBR C32 C  0 1 N N N N N N 29.893 32.679 16.837 6.304  1.013  -2.919 CBR  K1N 34 
K1N CBS C33 C  0 1 N N R N N N 30.312 31.773 17.830 5.335  1.549  -1.956 CBS  K1N 35 
K1N CBT C34 C  0 1 N N N N N N 29.780 32.093 19.222 4.515  2.753  -2.462 CBT  K1N 36 
K1N CBU C35 C  0 1 N N N N N N 30.263 30.829 19.887 3.278  2.725  -1.528 CBU  K1N 37 
K1N NAP N2  N  0 1 N N N N N N 25.667 25.178 21.210 -2.832 -0.331 1.581  NAP  K1N 38 
K1N NAW N3  N  0 1 N N N N N N 28.901 26.694 20.651 0.415  1.186  1.473  NAW  K1N 39 
K1N NBF N4  N  0 1 N N N N N N 29.829 29.733 18.958 3.170  1.353  -0.987 NBF  K1N 40 
K1N NBJ N5  N  0 1 N N N N N N 30.233 30.048 15.324 5.841  -1.287 -1.012 NBJ  K1N 41 
K1N OAL O2  O  0 1 N N N N N N 23.086 23.063 23.007 -4.062 2.303  -1.267 OAL  K1N 42 
K1N OAV O3  O  0 1 N N N N N N 26.876 27.407 20.389 -0.530 -0.248 0.063  OAV  K1N 43 
K1N OBE O4  O  0 1 N N N N N N 29.091 27.748 18.250 2.184  -0.265 0.168  OBE  K1N 44 
K1N OBI O5  O  0 1 N N N N N N 31.365 28.925 16.775 3.961  -1.024 0.022  OBI  K1N 45 
K1N OBM O6  O  0 1 N N N N N N 32.472 31.235 14.178 5.904  -0.461 1.489  OBM  K1N 46 
K1N CL1 CL1 CL 0 0 N N N N N N 21.270 26.636 20.886 -5.834 -2.947 0.198  CLAA K1N 47 
K1N HAM H1  H  0 1 N N N N N N 23.425 21.709 25.112 -6.830 3.715  -0.377 HAM  K1N 48 
K1N HZL H2  H  0 1 N N N N N N 24.907 22.649 25.496 -5.305 4.597  -0.630 HZL  K1N 49 
K1N HZM H3  H  0 1 N N N N N N 23.310 23.200 26.108 -6.135 3.840  -2.010 HZM  K1N 50 
K1N HAS H4  H  0 1 N N N N N N 27.812 24.054 18.987 -1.356 -1.545 3.876  HAS  K1N 51 
K1N HZP H5  H  0 1 N N N N N N 26.662 25.378 18.598 -0.037 -1.683 2.667  HZP  K1N 52 
K1N HZN H6  H  0 1 N N N N N N 24.237 25.229 19.624 -3.790 -2.096 0.912  HZN  K1N 53 
K1N HAQ H7  H  0 1 N N N N N N 24.019 23.885 20.796 -3.901 -1.797 2.672  HAQ  K1N 54 
K1N HZO H8  H  0 1 N N N N N N 25.385 23.345 18.529 -1.474 -2.753 1.055  HZO  K1N 55 
K1N HAR H9  H  0 1 N N N N N N 26.095 22.784 20.081 -2.132 -3.424 2.586  HAR  K1N 56 
K1N H   H10 H  0 1 N N N N N N 24.242 25.222 24.975 -6.478 1.657  0.540  H    K1N 57 
K1N HA  H11 H  0 1 N N N N N N 23.297 25.133 22.116 -5.425 -0.357 1.011  HA   K1N 58 
K1N HB2 H12 H  0 1 N N N N N N 24.003 27.526 23.876 -4.199 0.232  -1.720 HB2  K1N 59 
K1N HB1 H13 H  0 1 N N N N N N 23.597 27.613 22.129 -4.039 -1.314 -0.853 HB1  K1N 60 
K1N HD2 H14 H  0 1 N N N N N N 22.451 27.764 25.386 -6.167 0.752  -2.915 HD2  K1N 61 
K1N HE1 H15 H  0 1 N N N N N N 18.818 27.061 22.126 -8.316 -3.314 -1.151 HE1  K1N 62 
K1N HE2 H16 H  0 1 N N N N N N 20.112 27.755 26.117 -8.352 0.034  -3.792 HE2  K1N 63 
K1N HZ  H17 H  0 1 N N N N N N 18.282 27.698 24.481 -9.425 -2.001 -2.914 HZ   K1N 64 
K1N HAX H18 H  0 1 N N N N N N 27.466 23.453 22.069 -2.524 0.948  3.866  HAX  K1N 65 
K1N HAY H19 H  0 1 N N N N N N 29.875 23.943 22.299 -0.775 2.417  4.389  HAY  K1N 66 
K1N HAZ H20 H  0 1 N N N N N N 30.356 25.274 20.039 1.390  1.046  3.361  HAZ  K1N 67 
K1N HZQ H21 H  0 1 N N N N N N 31.794 25.870 22.010 0.407  3.810  2.446  HZQ  K1N 68 
K1N HBA H22 H  0 1 N N N N N N 30.439 26.790 22.747 1.797  3.421  3.516  HBA  K1N 69 
K1N HZR H23 H  0 1 N N N N N N 31.559 27.146 19.886 2.242  3.848  0.865  HZR  K1N 70 
K1N HBB H24 H  0 1 N N N N N N 31.652 28.353 21.213 3.085  2.497  1.688  HBB  K1N 71 
K1N HBC H25 H  0 1 N N N N N N 29.280 28.697 21.243 0.733  2.421  -0.201 HBC  K1N 72 
K1N HBG H26 H  0 1 N N N N N N 28.660 30.477 17.349 3.843  0.179  -2.529 HBG  K1N 73 
K1N HBK H27 H  0 1 N N N N N N 30.986 28.386 14.261 5.787  -3.139 0.004  HBK  K1N 74 
K1N HZS H29 H  0 1 N N N N N N 28.995 29.159 13.145 8.503  -2.272 0.436  HZS  K1N 75 
K1N HBN H30 H  0 1 N N N N N N 30.312 29.737 12.069 7.935  -3.606 -0.613 HBN  K1N 76 
K1N HBO H31 H  0 1 N N N N N N 30.370 31.942 13.227 8.646  -0.775 -1.347 HBO  K1N 77 
K1N HZT H32 H  0 1 N N N N N N 28.636 31.609 12.899 8.700  -2.257 -2.353 HZT  K1N 78 
K1N HBP H33 H  0 1 N N N N N N 28.252 30.756 15.059 6.383  -2.182 -2.821 HBP  K1N 79 
K1N HBQ H34 H  0 1 N N N N N N 29.204 33.237 14.927 7.470  -0.250 -3.861 HBQ  K1N 80 
K1N HBR H35 H  0 1 N N N N N N 29.914 33.725 17.106 6.630  1.714  -3.673 HBR  K1N 81 
K1N HBS H36 H  0 1 N N N N N N 31.409 31.702 17.865 5.861  1.849  -1.050 HBS  K1N 82 
K1N HBT H37 H  0 1 N N N N N N 30.236 32.997 19.651 5.073  3.681  -2.339 HBT  K1N 83 
K1N HZU H38 H  0 1 N N N N N N 28.684 32.190 19.244 4.220  2.611  -3.501 HZU  K1N 84 
K1N HBU H39 H  0 1 N N N N N N 29.799 30.708 20.877 3.413  3.435  -0.713 HBU  K1N 85 
K1N HZV H40 H  0 1 N N N N N N 31.358 30.839 19.994 2.381  2.974  -2.094 HZV  K1N 86 
K1N O1  O7  O  0 1 N Y N N N N 33.083 29.260 13.352 6.777  -2.257 2.435  O1   K1N 87 
K1N H1  H41 H  0 1 N N N N N N 33.887 29.737 13.183 6.730  -1.804 3.288  H1   K1N 88 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K1N CBN CBO SING N N 1  
K1N CBN CBK SING N N 2  
K1N CBO CBP SING N N 3  
K1N CBL CBK SING N N 4  
K1N CBL OBM DOUB N N 5  
K1N CBK NBJ SING N N 6  
K1N CBP NBJ SING N N 7  
K1N CBP CBQ SING N N 8  
K1N NBJ CBH SING N N 9  
K1N CBQ CBR DOUB N N 10 
K1N CBH OBI DOUB N N 11 
K1N CBH CBG SING N N 12 
K1N CBR CBS SING N N 13 
K1N CBG CBS SING N N 14 
K1N CBG NBF SING N N 15 
K1N CBS CBT SING N N 16 
K1N OBE CBD DOUB N N 17 
K1N NBF CBD SING N N 18 
K1N NBF CBU SING N N 19 
K1N CBD CBC SING N N 20 
K1N CBT CBU SING N N 21 
K1N CAS CAR SING N N 22 
K1N CAS CAT SING N N 23 
K1N CAR CAQ SING N N 24 
K1N CAQ NAP SING N N 25 
K1N OAV CAU DOUB N N 26 
K1N CBC NAW SING N N 27 
K1N CBC CBB SING N N 28 
K1N CAU NAW SING N N 29 
K1N CAU CAT SING N N 30 
K1N NAW CAZ SING N N 31 
K1N CAT NAP SING N N 32 
K1N CAT CAX SING N N 33 
K1N CBB CBA SING N N 34 
K1N CL1 CD1 SING N N 35 
K1N CAZ CAY SING N N 36 
K1N CAZ CBA SING N N 37 
K1N NAP C   SING N N 38 
K1N CAX CAY DOUB N N 39 
K1N C   CA  SING N N 40 
K1N C   O   DOUB N N 41 
K1N CD1 CE1 DOUB Y N 42 
K1N CD1 CG  SING Y N 43 
K1N CE1 CZ  SING Y N 44 
K1N CA  CB  SING N N 45 
K1N CA  N   SING N N 46 
K1N OAL CAK DOUB N N 47 
K1N CB  CG  SING N N 48 
K1N CG  CD2 DOUB Y N 49 
K1N CAK N   SING N N 50 
K1N CAK CAM SING N N 51 
K1N CZ  CE2 DOUB Y N 52 
K1N CD2 CE2 SING Y N 53 
K1N CAM HAM SING N N 54 
K1N CAM HZL SING N N 55 
K1N CAM HZM SING N N 56 
K1N CAS HAS SING N N 57 
K1N CAS HZP SING N N 58 
K1N CAQ HZN SING N N 59 
K1N CAQ HAQ SING N N 60 
K1N CAR HZO SING N N 61 
K1N CAR HAR SING N N 62 
K1N N   H   SING N N 63 
K1N CA  HA  SING N N 64 
K1N CB  HB2 SING N N 65 
K1N CB  HB1 SING N N 66 
K1N CD2 HD2 SING N N 67 
K1N CE1 HE1 SING N N 68 
K1N CE2 HE2 SING N N 69 
K1N CZ  HZ  SING N N 70 
K1N CAX HAX SING N N 71 
K1N CAY HAY SING N N 72 
K1N CAZ HAZ SING N N 73 
K1N CBA HZQ SING N N 74 
K1N CBA HBA SING N N 75 
K1N CBB HZR SING N N 76 
K1N CBB HBB SING N N 77 
K1N CBC HBC SING N N 78 
K1N CBG HBG SING N N 79 
K1N CBK HBK SING N N 80 
K1N CBN HZS SING N N 81 
K1N CBN HBN SING N N 82 
K1N CBO HBO SING N N 83 
K1N CBO HZT SING N N 84 
K1N CBP HBP SING N N 85 
K1N CBQ HBQ SING N N 86 
K1N CBR HBR SING N N 87 
K1N CBS HBS SING N N 88 
K1N CBT HBT SING N N 89 
K1N CBT HZU SING N N 90 
K1N CBU HBU SING N N 91 
K1N CBU HZV SING N N 92 
K1N CBL O1  SING N N 93 
K1N O1  H1  SING N N 94 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K1N InChI            InChI                1.03  "InChI=1S/C35H40ClN5O7/c1-20(42)37-26(19-22-5-2-3-6-25(22)36)30(43)39-17-4-15-35(39)16-13-24-9-11-27(41(24)34(35)48)31(44)38-18-14-21-7-8-23-10-12-28(33(46)47)40(23)32(45)29(21)38/h2-3,5-8,13,16,21,23-24,26-29H,4,9-12,14-15,17-19H2,1H3,(H,37,42)(H,46,47)/t21-,23-,24-,26-,27-,28-,29-,35+/m0/s1" 
K1N InChIKey         InChI                1.03  AYDUPBNKBXOHLZ-QHVDBZGRSA-N                                                                                                                                                                                                                                                                            
K1N SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H](Cc1ccccc1Cl)C(=O)N2CCC[C@]23C=C[C@@H]4CC[C@H](N4C3=O)C(=O)N5CC[C@@H]6C=C[C@H]7CC[C@H](N7C(=O)[C@@H]56)C(O)=O"                                                                                                                                                                           
K1N SMILES           CACTVS               3.385 "CC(=O)N[CH](Cc1ccccc1Cl)C(=O)N2CCC[C]23C=C[CH]4CC[CH](N4C3=O)C(=O)N5CC[CH]6C=C[CH]7CC[CH](N7C(=O)[CH]56)C(O)=O"                                                                                                                                                                                       
K1N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](Cc1ccccc1Cl)C(=O)N2CCC[C@]23C=C[C@@H]4CC[C@H](N4C3=O)C(=O)N5CC[C@H]6[C@H]5C(=O)N7[C@H](CC[C@H]7C(=O)O)C=C6"                                                                                                                                                                             
K1N SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(Cc1ccccc1Cl)C(=O)N2CCCC23C=CC4CCC(N4C3=O)C(=O)N5CCC6C5C(=O)N7C(CCC7C(=O)O)C=C6"                                                                                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           K1N 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        
;(3~{S},7~{R},10~{R},13~{S})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K1N "Create component" 2019-04-16 RCSB 
K1N "Initial release"  2020-05-13 RCSB 
K1N "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            K1N 
_pdbx_chem_comp_pcm.modified_residue_id                THR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CBL 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   N 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
