data_JON
#

_chem_comp.id                                   JON
_chem_comp.name                                 "[(2~{S})-pyrrolidin-2-yl]methyl ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H15 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-14
_chem_comp.pdbx_modified_date                   2019-08-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       241.244
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JON
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6R19
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JON  C4   C1   C  0  1  N  N  S  25.720  17.158  31.286   3.564   0.116   0.633  C4   JON   1  
JON  C5   C2   C  0  1  N  N  N  22.698  13.964  26.284  -3.074   0.972   0.093  C5   JON   2  
JON  C6   C3   C  0  1  N  N  N  23.064  11.791  25.723  -4.534  -0.738   0.213  C6   JON   3  
JON  C7   C4   C  0  1  N  N  N  24.246  12.174  26.559  -3.384  -1.309  -0.588  C7   JON   4  
JON  C8   C5   C  0  1  N  N  N  24.570  16.738  32.199   4.790   0.999   0.318  C8   JON   5  
JON  C9   C6   C  0  1  N  N  N  24.625  17.743  33.355   5.950  -0.029   0.244  C9   JON   6  
JON  C10  C7   C  0  1  N  N  N  25.105  19.015  32.686   5.244  -1.252  -0.393  C10  JON   7  
JON  N1   N1   N  0  1  N  N  N  24.399  14.192  28.057  -1.116  -0.494  -0.034  N1   JON   8  
JON  N2   N2   N  0  1  N  N  N  22.235  12.863  25.658  -4.258   0.531   0.537  N2   JON   9  
JON  C3   C8   C  0  1  N  N  N  25.353  17.055  29.832   2.342   0.631  -0.132  C3   JON  10  
JON  N3   N3   N  0  1  N  N  N  26.002  18.570  31.609   3.888  -1.254   0.196  N3   JON  11  
JON  C1   C9   C  0  1  N  N  S  24.111  13.713  26.739  -2.385  -0.137  -0.673  C1   JON  12  
JON  C2   C10  C  0  1  N  N  N  24.861  15.439  28.257   0.007   0.185  -0.341  C2   JON  13  
JON  O1   O1   O  0  1  N  N  N  24.952  15.682  29.588   1.173  -0.143   0.246  O1   JON  14  
JON  O2   O2   O  0  1  N  N  N  25.302  16.204  27.419  -0.033   1.093  -1.148  O2   JON  15  
JON  O3   O3   O  0  1  N  N  N  22.833  10.747  25.136  -5.545  -1.336   0.514  O3   JON  16  
JON  O4   O4   O  0  1  N  N  N  22.065  14.994  26.332  -2.627   2.084   0.272  O4   JON  17  
JON  H1   H1   H  0  1  N  N  N  26.603  16.535  31.495   3.365   0.127   1.704  H1   JON  18  
JON  H2   H2   H  0  1  N  N  N  24.215  11.664  27.533  -2.938  -2.157  -0.069  H2   JON  19  
JON  H3   H3   H  0  1  N  N  N  25.185  11.923  26.043  -3.718  -1.600  -1.584  H3   JON  20  
JON  H4   H4   H  0  1  N  N  N  23.608  16.803  31.670   4.664   1.507  -0.638  H4   JON  21  
JON  H5   H5   H  0  1  N  N  N  24.718  15.712  32.566   4.963   1.718   1.118  H5   JON  22  
JON  H6   H6   H  0  1  N  N  N  23.630  17.884  33.803   6.754   0.335  -0.397  H6   JON  23  
JON  H7   H7   H  0  1  N  N  N  25.333  17.414  34.130   6.325  -0.267   1.239  H7   JON  24  
JON  H8   H8   H  0  1  N  N  N  25.648  19.647  33.404   5.188  -1.137  -1.475  H8   JON  25  
JON  H9   H9   H  0  1  N  N  N  24.255  19.578  32.272   5.773  -2.170  -0.137  H9   JON  26  
JON  H10  H10  H  0  1  N  N  N  24.254  13.589  28.842  -1.084  -1.218   0.610  H10  JON  27  
JON  H11  H11  H  0  1  N  N  N  21.354  12.839  25.185  -4.865   1.085   1.051  H11  JON  28  
JON  H12  H12  H  0  1  N  N  N  26.220  17.312  29.205   2.178   1.680   0.110  H12  JON  29  
JON  H13  H13  H  0  1  N  N  N  24.521  17.737  29.604   2.515   0.527  -1.204  H13  JON  30  
JON  H14  H14  H  0  1  N  N  N  26.952  18.660  31.908   3.830  -1.902   0.967  H14  JON  31  
JON  H16  H16  H  0  1  N  N  N  24.794  14.193  26.022  -2.224   0.156  -1.710  H16  JON  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JON  O3   C6   DOUB  N  N   1  
JON  N2   C6   SING  N  N   2  
JON  N2   C5   SING  N  N   3  
JON  C6   C7   SING  N  N   4  
JON  C5   O4   DOUB  N  N   5  
JON  C5   C1   SING  N  N   6  
JON  C7   C1   SING  N  N   7  
JON  C1   N1   SING  N  N   8  
JON  O2   C2   DOUB  N  N   9  
JON  N1   C2   SING  N  N  10  
JON  C2   O1   SING  N  N  11  
JON  O1   C3   SING  N  N  12  
JON  C3   C4   SING  N  N  13  
JON  C4   N3   SING  N  N  14  
JON  C4   C8   SING  N  N  15  
JON  N3   C10  SING  N  N  16  
JON  C8   C9   SING  N  N  17  
JON  C10  C9   SING  N  N  18  
JON  C4   H1   SING  N  N  19  
JON  C7   H2   SING  N  N  20  
JON  C7   H3   SING  N  N  21  
JON  C8   H4   SING  N  N  22  
JON  C8   H5   SING  N  N  23  
JON  C9   H6   SING  N  N  24  
JON  C9   H7   SING  N  N  25  
JON  C10  H8   SING  N  N  26  
JON  C10  H9   SING  N  N  27  
JON  N1   H10  SING  N  N  28  
JON  N2   H11  SING  N  N  29  
JON  C3   H12  SING  N  N  30  
JON  C3   H13  SING  N  N  31  
JON  N3   H14  SING  N  N  32  
JON  C1   H16  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JON  InChI             InChI                 1.03   "InChI=1S/C10H15N3O4/c14-8-4-7(9(15)13-8)12-10(16)17-5-6-2-1-3-11-6/h6-7,11H,1-5H2,(H,12,16)(H,13,14,15)/t6-,7-/m0/s1"  
JON  InChIKey          InChI                 1.03   BROVZDKFOULGAP-BQBZGAKWSA-N  
JON  SMILES_CANONICAL  CACTVS                3.385  "O=C1C[C@H](NC(=O)OC[C@@H]2CCCN2)C(=O)N1"  
JON  SMILES            CACTVS                3.385  "O=C1C[CH](NC(=O)OC[CH]2CCCN2)C(=O)N1"  
JON  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1C[C@H](NC1)COC(=O)N[C@H]2CC(=O)NC2=O"  
JON  SMILES            "OpenEye OEToolkits"  2.0.7  "C1CC(NC1)COC(=O)NC2CC(=O)NC2=O"  
#
_pdbx_chem_comp_identifier.comp_id          JON
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{S})-pyrrolidin-2-yl]methyl ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JON  "Create component"  2019-03-14  RCSB  
JON  "Initial release"   2019-08-07  RCSB  
##
