data_J5N
# 
_chem_comp.id                                    J5N 
_chem_comp.name                                  "~{N}-[(2~{S})-1-[(3~{R},3~{a}~{R},6~{R},6~{a}~{R})-6-ethynyl-3-oxidanyl-2,3,3~{a},5,6,6~{a}-hexahydrofuro[3,2-b]pyrrol-4-yl]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-[5-fluoranyl-2-(4-methylpiperazin-1-yl)-1,3-thiazol-4-yl]benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H36 F N5 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-02-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        569.691 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J5N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6QL8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J5N C12 C1  C 0 1 N N N N N N 35.319 14.805 16.803 4.414   0.273  0.425  C12 J5N 1  
J5N C10 C2  C 0 1 N N N N N N 37.933 11.423 14.353 8.667   -2.158 0.898  C10 J5N 2  
J5N C11 C3  C 0 1 N N N N N N 38.801 10.689 14.032 9.471   -2.940 0.553  C11 J5N 3  
J5N C7  C4  C 0 1 N N N N N N 34.809 10.780 16.957 8.425   1.575  -0.863 C7  J5N 4  
J5N C6  C5  C 0 1 N N R N N N 33.829 11.881 16.627 6.977   1.889  -0.428 C6  J5N 5  
J5N N1  N1  N 0 1 N N N N N N 35.650 13.617 16.272 5.730   0.022  0.571  N1  J5N 6  
J5N C5  C6  C 0 1 N N R N N N 34.648 12.714 15.650 6.767   1.027  0.836  C5  J5N 7  
J5N C4  C7  C 0 1 N N R N N N 35.485 11.708 14.891 8.112   0.267  1.001  C4  J5N 8  
J5N F33 F1  F 0 1 N N N N N N 35.973 23.905 15.693 -3.825  2.990  0.846  F33 J5N 9  
J5N C29 C8  C 0 1 Y N N N N N 35.946 23.664 14.330 -4.674  2.000  0.493  C29 J5N 10 
J5N S30 S1  S 0 1 Y N N N N N 35.579 24.952 13.258 -6.414  2.162  0.269  S30 J5N 11 
J5N C31 C9  C 0 1 Y N N N N N 35.745 23.873 11.929 -6.526  0.453  -0.138 C31 J5N 12 
J5N N34 N2  N 0 1 N N N N N N 35.586 24.204 10.598 -7.697  -0.216 -0.460 N34 J5N 13 
J5N C39 C10 C 0 1 N N N N N N 34.835 25.425 10.283 -8.850  0.694  -0.426 C39 J5N 14 
J5N C38 C11 C 0 1 N N N N N N 35.125 25.924 8.878  -10.106 -0.063 -0.864 C38 J5N 15 
J5N N37 N3  N 0 1 N N N N N N 34.891 24.880 7.892  -10.319 -1.211 0.029  N37 J5N 16 
J5N C40 C12 C 0 1 N N N N N N 35.140 25.380 6.536  -11.559 -1.921 -0.313 C40 J5N 17 
J5N C36 C13 C 0 1 N N N N N N 35.742 23.736 8.185  -9.166  -2.121 -0.005 C36 J5N 18 
J5N C35 C14 C 0 1 N N N N N N 35.409 23.180 9.565  -7.909  -1.364 0.433  C35 J5N 19 
J5N N32 N4  N 0 1 Y N N N N N 36.050 22.599 12.278 -5.349  -0.084 -0.084 N32 J5N 20 
J5N C28 C15 C 0 1 Y N N N N N 36.203 22.484 13.640 -4.334  0.718  0.245  C28 J5N 21 
J5N C25 C16 C 0 1 Y N N N N N 36.482 21.135 14.224 -2.939  0.234  0.342  C25 J5N 22 
J5N C24 C17 C 0 1 Y N N N N N 36.477 20.947 15.612 -1.883  1.068  -0.034 C24 J5N 23 
J5N C23 C18 C 0 1 Y N N N N N 36.676 19.697 16.169 -0.595  0.622  0.056  C23 J5N 24 
J5N C26 C19 C 0 1 Y N N N N N 36.667 20.016 13.405 -2.679  -1.054 0.817  C26 J5N 25 
J5N C27 C20 C 0 1 Y N N N N N 36.863 18.752 13.968 -1.392  -1.501 0.907  C27 J5N 26 
J5N C22 C21 C 0 1 Y N N N N N 36.871 18.585 15.356 -0.334  -0.670 0.525  C22 J5N 27 
J5N C20 C22 C 0 1 N N N N N N 37.035 17.210 15.950 1.056   -1.152 0.623  C20 J5N 28 
J5N O21 O1  O 0 1 N N N N N N 37.611 16.339 15.313 1.283   -2.274 1.035  O21 J5N 29 
J5N N19 N5  N 0 1 N N N N N N 36.405 16.939 17.108 2.075   -0.350 0.255  N19 J5N 30 
J5N C13 C23 C 0 1 N N S N N N 36.275 15.601 17.657 3.446   -0.867 0.241  C13 J5N 31 
J5N C15 C24 C 0 1 N N N N N N 35.719 15.663 19.069 3.718   -1.557 -1.097 C15 J5N 32 
J5N C16 C25 C 0 1 N N N N N N 36.612 16.355 20.086 3.402   -0.593 -2.242 C16 J5N 33 
J5N C18 C26 C 0 1 N N N N N N 37.667 15.389 20.611 4.460   0.512  -2.285 C18 J5N 34 
J5N C17 C27 C 0 1 N N N N N N 35.778 16.932 21.224 3.407   -1.356 -3.568 C17 J5N 35 
J5N O14 O2  O 0 1 N N N N N N 34.233 15.328 16.597 4.009   1.416  0.446  O14 J5N 36 
J5N O9  O3  O 0 1 N N N N N N 32.696 11.288 15.986 6.838   3.277  -0.118 O9  J5N 37 
J5N O8  O4  O 0 1 N N N N N N 35.536 10.556 15.744 8.703   0.269  -0.317 O8  J5N 38 
J5N C3  C28 C 0 1 N N R N N N 36.847 12.342 14.747 7.658   -1.177 1.331  C3  J5N 39 
J5N C2  C29 C 0 1 N N N N N N 36.996 13.068 16.074 6.365   -1.306 0.491  C2  J5N 40 
J5N H1  H1  H 0 1 N N N N N N 39.580 10.030 13.744 10.191  -3.639 0.244  H1  J5N 41 
J5N H2  H2  H 0 1 N N N N N N 34.277 9.867  17.263 8.498   1.555  -1.951 H2  J5N 42 
J5N H3  H3  H 0 1 N N N N N N 35.488 11.096 17.762 9.114   2.313  -0.451 H3  J5N 43 
J5N H4  H4  H 0 1 N N N N N N 33.558 12.462 17.521 6.273   1.600  -1.208 H4  J5N 44 
J5N H5  H5  H 0 1 N N N N N N 33.988 13.266 14.965 6.523   1.638  1.705  H5  J5N 45 
J5N H6  H6  H 0 1 N N N N N N 35.044 11.484 13.909 8.763   0.705  1.758  H6  J5N 46 
J5N H7  H7  H 0 1 N N N N N N 35.113 26.209 11.003 -8.987  1.070  0.587  H7  J5N 47 
J5N H8  H8  H 0 1 N N N N N N 33.759 25.213 10.370 -8.674  1.529  -1.104 H8  J5N 48 
J5N H9  H9  H 0 1 N N N N N N 36.176 26.244 8.820  -10.968 0.602  -0.812 H9  J5N 49 
J5N H10 H10 H 0 1 N N N N N N 34.469 26.779 8.658  -9.980  -0.416 -1.887 H10 J5N 50 
J5N H12 H12 H 0 1 N N N N N N 34.487 26.243 6.337  -11.727 -2.724 0.404  H12 J5N 51 
J5N H13 H13 H 0 1 N N N N N N 36.192 25.688 6.446  -12.397 -1.224 -0.280 H13 J5N 52 
J5N H14 H14 H 0 1 N N N N N N 34.928 24.584 5.807  -11.474 -2.340 -1.315 H14 J5N 53 
J5N H15 H15 H 0 1 N N N N N N 35.577 22.955 7.428  -9.342  -2.956 0.673  H15 J5N 54 
J5N H16 H16 H 0 1 N N N N N N 36.796 24.051 8.163  -9.029  -2.498 -1.018 H16 J5N 55 
J5N H17 H17 H 0 1 N N N N N N 34.364 22.838 9.573  -7.047  -2.030 0.381  H17 J5N 56 
J5N H18 H18 H 0 1 N N N N N N 36.074 22.331 9.781  -8.035  -1.011 1.456  H18 J5N 57 
J5N H19 H19 H 0 1 N N N N N N 36.314 21.795 16.260 -2.085  2.065  -0.397 H19 J5N 58 
J5N H20 H20 H 0 1 N N N N N N 36.680 19.583 17.243 0.221   1.266  -0.236 H20 J5N 59 
J5N H21 H21 H 0 1 N N N N N N 36.658 20.130 12.331 -3.496  -1.696 1.112  H21 J5N 60 
J5N H22 H22 H 0 1 N N N N N N 37.010 17.897 13.325 -1.191  -2.497 1.273  H22 J5N 61 
J5N H23 H23 H 0 1 N N N N N N 36.005 17.700 17.618 1.901   0.569  -0.002 H23 J5N 62 
J5N H24 H24 H 0 1 N N N N N N 37.254 15.100 17.674 3.572   -1.585 1.052  H24 J5N 63 
J5N H25 H25 H 0 1 N N N N N N 34.761 16.203 19.034 4.766   -1.851 -1.148 H25 J5N 64 
J5N H26 H26 H 0 1 N N N N N N 35.547 14.632 19.413 3.088   -2.443 -1.184 H26 J5N 65 
J5N H27 H27 H 0 1 N N N N N N 37.127 17.186 19.582 2.419   -0.148 -2.082 H27 J5N 66 
J5N H28 H28 H 0 1 N N N N N N 38.304 15.904 21.345 5.445   0.078  -2.112 H28 J5N 67 
J5N H29 H29 H 0 1 N N N N N N 37.173 14.532 21.092 4.442   0.994  -3.262 H29 J5N 68 
J5N H30 H30 H 0 1 N N N N N N 38.286 15.032 19.775 4.247   1.250  -1.511 H30 J5N 69 
J5N H31 H31 H 0 1 N N N N N N 36.440 17.428 21.949 2.653   -2.142 -3.537 H31 J5N 70 
J5N H32 H32 H 0 1 N N N N N N 35.063 17.664 20.820 3.182   -0.668 -4.383 H32 J5N 71 
J5N H33 H33 H 0 1 N N N N N N 35.229 16.120 21.724 4.389   -1.800 -3.728 H33 J5N 72 
J5N H34 H34 H 0 1 N N N N N N 32.206 10.776 16.618 7.016   3.866  -0.864 H34 J5N 73 
J5N H35 H35 H 0 1 N N N N N N 36.765 13.112 13.966 7.445   -1.285 2.395  H35 J5N 74 
J5N H36 H36 H 0 1 N N N N N N 37.267 12.373 16.882 5.709   -2.066 0.916  H36 J5N 75 
J5N H37 H37 H 0 1 N N N N N N 37.749 13.868 16.010 6.607   -1.549 -0.544 H37 J5N 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J5N C40 N37 SING N N 1  
J5N N37 C36 SING N N 2  
J5N N37 C38 SING N N 3  
J5N C36 C35 SING N N 4  
J5N C38 C39 SING N N 5  
J5N C35 N34 SING N N 6  
J5N C39 N34 SING N N 7  
J5N N34 C31 SING N N 8  
J5N C31 N32 DOUB Y N 9  
J5N C31 S30 SING Y N 10 
J5N N32 C28 SING Y N 11 
J5N S30 C29 SING Y N 12 
J5N C26 C27 DOUB Y N 13 
J5N C26 C25 SING Y N 14 
J5N C28 C25 SING N N 15 
J5N C28 C29 DOUB Y N 16 
J5N C27 C22 SING Y N 17 
J5N C11 C10 TRIP N N 18 
J5N C25 C24 DOUB Y N 19 
J5N C29 F33 SING N N 20 
J5N C10 C3  SING N N 21 
J5N C3  C4  SING N N 22 
J5N C3  C2  SING N N 23 
J5N C4  C5  SING N N 24 
J5N C4  O8  SING N N 25 
J5N O21 C20 DOUB N N 26 
J5N C22 C20 SING N N 27 
J5N C22 C23 DOUB Y N 28 
J5N C24 C23 SING Y N 29 
J5N C5  N1  SING N N 30 
J5N C5  C6  SING N N 31 
J5N O8  C7  SING N N 32 
J5N C20 N19 SING N N 33 
J5N O9  C6  SING N N 34 
J5N C2  N1  SING N N 35 
J5N N1  C12 SING N N 36 
J5N O14 C12 DOUB N N 37 
J5N C6  C7  SING N N 38 
J5N C12 C13 SING N N 39 
J5N N19 C13 SING N N 40 
J5N C13 C15 SING N N 41 
J5N C15 C16 SING N N 42 
J5N C16 C18 SING N N 43 
J5N C16 C17 SING N N 44 
J5N C11 H1  SING N N 45 
J5N C7  H2  SING N N 46 
J5N C7  H3  SING N N 47 
J5N C6  H4  SING N N 48 
J5N C5  H5  SING N N 49 
J5N C4  H6  SING N N 50 
J5N C39 H7  SING N N 51 
J5N C39 H8  SING N N 52 
J5N C38 H9  SING N N 53 
J5N C38 H10 SING N N 54 
J5N C40 H12 SING N N 55 
J5N C40 H13 SING N N 56 
J5N C40 H14 SING N N 57 
J5N C36 H15 SING N N 58 
J5N C36 H16 SING N N 59 
J5N C35 H17 SING N N 60 
J5N C35 H18 SING N N 61 
J5N C24 H19 SING N N 62 
J5N C23 H20 SING N N 63 
J5N C26 H21 SING N N 64 
J5N C27 H22 SING N N 65 
J5N N19 H23 SING N N 66 
J5N C13 H24 SING N N 67 
J5N C15 H25 SING N N 68 
J5N C15 H26 SING N N 69 
J5N C16 H27 SING N N 70 
J5N C18 H28 SING N N 71 
J5N C18 H29 SING N N 72 
J5N C18 H30 SING N N 73 
J5N C17 H31 SING N N 74 
J5N C17 H32 SING N N 75 
J5N C17 H33 SING N N 76 
J5N O9  H34 SING N N 77 
J5N C3  H35 SING N N 78 
J5N C2  H36 SING N N 79 
J5N C2  H37 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J5N InChI            InChI                1.03  "InChI=1S/C29H36FN5O4S/c1-5-18-15-35(24-22(36)16-39-25(18)24)28(38)21(14-17(2)3)31-27(37)20-8-6-19(7-9-20)23-26(30)40-29(32-23)34-12-10-33(4)11-13-34/h1,6-9,17-18,21-22,24-25,36H,10-16H2,2-4H3,(H,31,37)/t18-,21+,22+,24-,25-/m1/s1" 
J5N InChIKey         InChI                1.03  LXQZJMLAONLFAB-KFGZMKLQSA-N                                                                                                                                                                                                            
J5N SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)c1ccc(cc1)c2nc(sc2F)N3CCN(C)CC3)C(=O)N4C[C@@H](C#C)[C@H]5OC[C@H](O)[C@@H]45"                                                                                                                                        
J5N SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)c1ccc(cc1)c2nc(sc2F)N3CCN(C)CC3)C(=O)N4C[CH](C#C)[CH]5OC[CH](O)[CH]45"                                                                                                                                               
J5N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)C[C@@H](C(=O)N1C[C@H]([C@@H]2[C@H]1[C@H](CO2)O)C#C)NC(=O)c3ccc(cc3)c4c(sc(n4)N5CCN(CC5)C)F"                                                                                                                                      
J5N SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)CC(C(=O)N1CC(C2C1C(CO2)O)C#C)NC(=O)c3ccc(cc3)c4c(sc(n4)N5CCN(CC5)C)F"                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           J5N 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-1-[(3~{R},3~{a}~{R},6~{R},6~{a}~{R})-6-ethynyl-3-oxidanyl-2,3,3~{a},5,6,6~{a}-hexahydrofuro[3,2-b]pyrrol-4-yl]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-[5-fluoranyl-2-(4-methylpiperazin-1-yl)-1,3-thiazol-4-yl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J5N "Create component" 2019-02-01 EBI  
J5N "Initial release"  2020-02-19 RCSB 
J5N "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            J5N 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C6 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
