data_J3N
# 
_chem_comp.id                                    J3N 
_chem_comp.name                                  "1-[(3~{R})-3-[4-azanyl-3-(1~{H}-pyrrolo[2,3-b]pyridin-5-yl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]propan-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H22 N8 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-01-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        390.442 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J3N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6QHR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J3N C11 C1  C 0 1 N N N N N N -24.648 -14.183 6.027  5.297  0.872  -0.772 C11 J3N 1  
J3N C13 C2  C 0 1 N N N N N N -22.589 -15.395 6.578  7.666  0.954  -1.503 C13 J3N 2  
J3N C16 C3  C 0 1 Y N N N N N -28.487 -5.246  9.139  -4.901 1.929  -0.468 C16 J3N 3  
J3N C17 C4  C 0 1 Y N N N N N -26.939 -6.908  8.615  -2.626 1.763  -0.827 C17 J3N 4  
J3N C18 C5  C 0 1 Y N N N N N -29.903 -4.185  7.550  -6.284 0.511  0.696  C18 J3N 5  
J3N C19 C6  C 0 1 Y N N N N N -30.091 -3.706  8.842  -7.007 1.531  0.207  C19 J3N 6  
J3N N   N1  N 0 1 Y N N N N N -24.200 -6.550  3.489  -1.215 -3.871 -0.410 N   J3N 7  
J3N C   C7  C 0 1 Y N N N N N -23.917 -7.784  3.045  0.077  -4.009 -0.174 C   J3N 8  
J3N O   O1  O 0 1 N N N N N N -24.925 -15.134 5.316  5.094  0.426  -1.882 O   J3N 9  
J3N C1  C8  C 0 1 Y N N N N N -25.271 -8.841  4.641  0.372  -1.753 0.171  C1  J3N 10 
J3N C10 C9  C 0 1 N N N N N N -25.306 -11.850 6.553  2.901  0.684  -0.308 C10 J3N 11 
J3N C12 C10 C 0 1 N N N N N N -23.232 -14.020 6.523  6.697  1.242  -0.354 C12 J3N 12 
J3N C14 C11 C 0 1 Y N N N N N -28.260 -5.997  6.793  -3.702 0.043  0.468  C14 J3N 13 
J3N C15 C12 C 0 1 Y N N N N N -28.881 -5.169  7.724  -4.899 0.734  0.278  C15 J3N 14 
J3N C2  C13 C 0 1 Y N N N N N -25.639 -7.524  5.193  -1.001 -1.557 -0.073 C2  J3N 15 
J3N C3  C14 C 0 1 Y N N N N N -25.029 -6.341  4.534  -1.796 -2.675 -0.371 C3  J3N 16 
J3N C4  C15 C 0 1 Y N N N N N -26.575 -7.804  6.325  -1.243 -0.121 0.062  C4  J3N 17 
J3N C5  C16 C 0 1 Y N N N N N -27.270 -6.866  7.256  -2.545 0.569  -0.105 C5  J3N 18 
J3N C6  C17 C 0 1 N N R N N N -25.979 -11.228 5.332  2.315  -0.267 0.740  C6  J3N 19 
J3N C7  C18 C 0 1 N N N N N N -27.452 -11.630 5.282  2.424  0.377  2.125  C7  J3N 20 
J3N C8  C19 C 0 1 N N N N N N -27.653 -13.136 5.413  3.897  0.619  2.462  C8  J3N 21 
J3N C9  C20 C 0 1 N N N N N N -26.937 -13.658 6.648  4.501  1.580  1.432  C9  J3N 22 
J3N N1  N2  N 0 1 Y N N N N N -24.423 -8.902  3.590  0.861  -2.992 0.109  N1  J3N 23 
J3N N2  N3  N 0 1 Y N N N N N -25.914 -9.744  5.381  0.907  -0.527 0.432  N2  J3N 24 
J3N N3  N4  N 0 1 Y N N N N N -26.702 -9.153  6.385  -0.097 0.444  0.359  N3  J3N 25 
J3N N4  N5  N 0 1 N N N N N N -25.289 -5.082  4.941  -3.148 -2.536 -0.619 N4  J3N 26 
J3N N5  N6  N 0 1 N N N N N N -25.560 -13.280 6.396  4.271  1.040  0.085  N5  J3N 27 
J3N N6  N7  N 0 1 Y N N N N N -27.522 -6.115  9.529  -3.769 2.393  -0.984 N6  J3N 28 
J3N N7  N8  N 0 1 Y N N N N N -29.267 -4.327  9.747  -6.196 2.388  -0.487 N7  J3N 29 
J3N H1  H1  H 0 1 N N N N N N -21.554 -15.302 6.938  8.678  1.222  -1.200 H1  J3N 30 
J3N H2  H2  H 0 1 N N N N N N -23.159 -16.039 7.264  7.629  -0.107 -1.752 H2  J3N 31 
J3N H3  H3  H 0 1 N N N N N N -22.589 -15.840 5.572  7.380  1.542  -2.375 H3  J3N 32 
J3N H4  H4  H 0 1 N N N N N N -26.184 -7.607  8.942  -1.730 2.178  -1.265 H4  J3N 33 
J3N H5  H5  H 0 1 N N N N N N -30.405 -3.887  6.641  -6.653 -0.315 1.286  H5  J3N 34 
J3N H7  H7  H 0 1 N N N N N N -30.802 -2.936  9.103  -8.071 1.657  0.343  H7  J3N 35 
J3N H8  H8  H 0 1 N N N N N N -23.246 -7.883  2.204  0.508  -4.999 -0.216 H8  J3N 36 
J3N H9  H9  H 0 1 N N N N N N -24.226 -11.641 6.555  2.916  0.191  -1.280 H9  J3N 37 
J3N H10 H10 H 0 1 N N N N N N -25.754 -11.472 7.484  2.291  1.586  -0.365 H10 J3N 38 
J3N H11 H11 H 0 1 N N N N N N -22.668 -13.372 5.835  6.733  2.302  -0.105 H11 J3N 39 
J3N H12 H12 H 0 1 N N N N N N -23.238 -13.571 7.527  6.983  0.654  0.518  H12 J3N 40 
J3N H13 H13 H 0 1 N N N N N N -28.534 -5.968  5.749  -3.674 -0.877 1.032  H13 J3N 41 
J3N H14 H14 H 0 1 N N N N N N -25.477 -11.589 4.422  2.869  -1.205 0.730  H14 J3N 42 
J3N H15 H15 H 0 1 N N N N N N -27.982 -11.131 6.107  1.890  1.327  2.126  H15 J3N 43 
J3N H16 H16 H 0 1 N N N N N N -27.875 -11.300 4.322  1.986  -0.287 2.869  H16 J3N 44 
J3N H17 H17 H 0 1 N N N N N N -28.728 -13.353 5.498  3.976  1.056  3.457  H17 J3N 45 
J3N H18 H18 H 0 1 N N N N N N -27.248 -13.635 4.520  4.437  -0.327 2.436  H18 J3N 46 
J3N H19 H19 H 0 1 N N N N N N -27.320 -13.179 7.561  4.023  2.556  1.519  H19 J3N 47 
J3N H20 H20 H 0 1 N N N N N N -27.040 -14.750 6.735  5.572  1.681  1.610  H20 J3N 48 
J3N H21 H21 H 0 1 N N N N N N -24.791 -4.435  4.364  -3.728 -3.313 -0.592 H21 J3N 49 
J3N H22 H22 H 0 1 N N N N N N -26.271 -4.905  4.869  -3.517 -1.662 -0.821 H22 J3N 50 
J3N H6  H6  H 0 1 N N N N N N -29.247 -4.126  10.726 -6.493 3.199  -0.928 H6  J3N 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J3N C   N   DOUB Y N 1  
J3N C   N1  SING Y N 2  
J3N N   C3  SING Y N 3  
J3N N1  C1  DOUB Y N 4  
J3N C3  N4  SING N N 5  
J3N C3  C2  DOUB Y N 6  
J3N C1  C2  SING Y N 7  
J3N C1  N2  SING Y N 8  
J3N C2  C4  SING Y N 9  
J3N C7  C6  SING N N 10 
J3N C7  C8  SING N N 11 
J3N O   C11 DOUB N N 12 
J3N C6  N2  SING N N 13 
J3N C6  C10 SING N N 14 
J3N N2  N3  SING Y N 15 
J3N C8  C9  SING N N 16 
J3N C11 N5  SING N N 17 
J3N C11 C12 SING N N 18 
J3N C4  N3  DOUB Y N 19 
J3N C4  C5  SING N N 20 
J3N N5  C10 SING N N 21 
J3N N5  C9  SING N N 22 
J3N C12 C13 SING N N 23 
J3N C14 C5  DOUB Y N 24 
J3N C14 C15 SING Y N 25 
J3N C5  C17 SING Y N 26 
J3N C18 C15 SING Y N 27 
J3N C18 C19 DOUB Y N 28 
J3N C15 C16 DOUB Y N 29 
J3N C17 N6  DOUB Y N 30 
J3N C19 N7  SING Y N 31 
J3N C16 N6  SING Y N 32 
J3N C16 N7  SING Y N 33 
J3N C13 H1  SING N N 34 
J3N C13 H2  SING N N 35 
J3N C13 H3  SING N N 36 
J3N C17 H4  SING N N 37 
J3N C18 H5  SING N N 38 
J3N C19 H7  SING N N 39 
J3N C   H8  SING N N 40 
J3N C10 H9  SING N N 41 
J3N C10 H10 SING N N 42 
J3N C12 H11 SING N N 43 
J3N C12 H12 SING N N 44 
J3N C14 H13 SING N N 45 
J3N C6  H14 SING N N 46 
J3N C7  H15 SING N N 47 
J3N C7  H16 SING N N 48 
J3N C8  H17 SING N N 49 
J3N C8  H18 SING N N 50 
J3N C9  H19 SING N N 51 
J3N C9  H20 SING N N 52 
J3N N4  H21 SING N N 53 
J3N N4  H22 SING N N 54 
J3N N7  H6  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J3N InChI            InChI                1.03  "InChI=1S/C20H22N8O/c1-2-15(29)27-7-3-4-14(10-27)28-20-16(18(21)24-11-25-20)17(26-28)13-8-12-5-6-22-19(12)23-9-13/h5-6,8-9,11,14H,2-4,7,10H2,1H3,(H,22,23)(H2,21,24,25)/t14-/m1/s1" 
J3N InChIKey         InChI                1.03  BSJLZNJGXVKCML-CQSZACIVSA-N                                                                                                                                                         
J3N SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N1CCC[C@H](C1)n2nc(c3cnc4[nH]ccc4c3)c5c(N)ncnc25"                                                                                                                           
J3N SMILES           CACTVS               3.385 "CCC(=O)N1CCC[CH](C1)n2nc(c3cnc4[nH]ccc4c3)c5c(N)ncnc25"                                                                                                                            
J3N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCC[C@H](C1)n2c3c(c(n2)c4cc5cc[nH]c5nc4)c(ncn3)N"                                                                                                                         
J3N SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCC(C1)n2c3c(c(n2)c4cc5cc[nH]c5nc4)c(ncn3)N"                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           J3N 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[(3~{R})-3-[4-azanyl-3-(1~{H}-pyrrolo[2,3-b]pyridin-5-yl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J3N "Create component"   2019-01-18 EBI  
J3N "Initial release"    2019-05-22 RCSB 
J3N "Other modification" 2019-05-29 EBI  
J3N "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            J3N 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
