data_H5N
# 
_chem_comp.id                                    H5N 
_chem_comp.name                                  "(2~{R},3~{R},4~{S},5~{R},6~{S})-4-[4-[4-azido-2,3,5,6-tetrakis(fluoranyl)phenyl]-1,2,3-triazol-1-yl]-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-oxane-3,5-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H18 F4 N6 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-11-16 
_chem_comp.pdbx_modified_date                    2019-01-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        526.464 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H5N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6I76 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H5N N1  N1  N 0  1 Y N N -16.129 7.779  -1.318 -0.336 1.436  -0.777 N1  H5N 1  
H5N N3  N2  N 1  1 N N N -8.593  10.469 1.834  -8.202 -1.263 0.422  N3  H5N 2  
H5N C4  C1  C 0  1 Y N N -23.301 10.536 -2.671 6.370  -2.582 -0.344 C4  H5N 3  
H5N C5  C2  C 0  1 Y N N -23.552 8.122  -3.965 7.449  -0.030 -0.350 C5  H5N 4  
H5N C6  C3  C 0  1 Y N N -22.445 8.366  -3.171 6.079  -0.195 -0.398 C6  H5N 5  
H5N C7  C4  C 0  1 Y N N -22.310 9.580  -2.510 5.533  -1.473 -0.395 C7  H5N 6  
H5N C8  C5  C 0  1 N N S -19.858 8.449  -1.580 3.167  0.017  -0.511 C8  H5N 7  
H5N C10 C6  C 0  1 N N N -20.222 5.273  0.250  3.495  2.659  2.101  C10 H5N 8  
H5N C13 C7  C 0  1 Y N N -15.447 8.162  -0.266 -1.158 0.511  -0.234 C13 H5N 9  
H5N C15 C8  C 0  1 Y N N -12.947 8.669  0.081  -3.701 0.217  -0.222 C15 H5N 10 
H5N C17 C9  C 0  1 Y N N -10.736 9.621  0.160  -4.798 -1.604 0.900  C17 H5N 11 
H5N C20 C10 C 0  1 Y N N -12.844 8.446  1.439  -4.917 0.758  -0.660 C20 H5N 12 
H5N C21 C11 C 0  1 N N R -18.387 8.808  -1.398 1.647  0.003  -0.694 C21 H5N 13 
H5N C1  C12 C 0  1 N N N -25.760 8.802  -4.992 9.773  -0.952 -0.236 C1  H5N 14 
H5N C11 C13 C 0  1 N N R -18.102 6.492  -0.466 1.547  2.113  0.633  C11 H5N 15 
H5N C12 C14 C 0  1 N N S -17.566 7.513  -1.473 1.125  1.443  -0.678 C12 H5N 16 
H5N C14 C15 C 0  1 Y N N -14.143 8.285  -0.666 -2.439 0.899  -0.577 C14 H5N 17 
H5N C16 C16 C 0  1 Y N N -11.861 9.256  -0.542 -3.653 -0.952 0.550  C16 H5N 18 
H5N C18 C17 C 0  1 Y N N -10.627 9.395  1.529  -6.088 -1.072 0.451  C18 H5N 19 
H5N C19 C18 C 0  1 Y N N -11.721 8.803  2.148  -6.100 0.155  -0.350 C19 H5N 20 
H5N C2  C19 C 0  1 Y N N -24.550 9.068  -4.127 8.278  -1.136 -0.288 C2  H5N 21 
H5N C3  C20 C 0  1 Y N N -24.402 10.274 -3.468 7.739  -2.409 -0.290 C3  H5N 22 
H5N C9  C21 C 0  1 N N R -19.590 6.234  -0.733 3.070  2.045  0.765  C9  H5N 23 
H5N F1  F1  F 0  1 N N N -11.919 9.493  -1.862 -2.458 -1.439 0.951  F1  H5N 24 
H5N F2  F2  F 0  1 N N N -9.721  10.188 -0.519 -4.743 -2.733 1.640  F2  H5N 25 
H5N F3  F3  F 0  1 N N N -11.692 8.573  3.474  -7.269 0.683  -0.776 F3  H5N 26 
H5N F4  F4  F 0  1 N N N -13.879 7.873  2.071  -4.918 1.890  -1.397 F4  H5N 27 
H5N N2  N3  N 0  1 N N N -9.487  9.748  2.325  -7.219 -1.681 0.773  N2  H5N 28 
H5N N4  N4  N -1 1 N N N -7.873  11.124 1.258  -9.184 -0.845 0.071  N4  H5N 29 
H5N N5  N5  N 0  1 Y N N -14.081 7.942  -1.980 -2.302 2.027  -1.301 N5  H5N 30 
H5N N6  N6  N 0  1 Y N N -15.295 7.642  -2.378 -1.050 2.305  -1.400 N6  H5N 31 
H5N O1  O1  O 0  1 N N N -20.304 7.477  -0.640 3.492  0.681  0.712  O1  H5N 32 
H5N O2  O2  O 0  1 N N N -21.589 5.015  -0.073 4.922  2.701  2.174  O2  H5N 33 
H5N O3  O3  O 0  1 N N N -17.952 6.968  0.868  0.942  1.431  1.734  O3  H5N 34 
H5N O4  O4  O 0  1 N N N -18.024 9.745  -2.419 1.322  -0.611 -1.943 O4  H5N 35 
H5N S1  S1  S 0  1 N N N -20.910 9.943  -1.473 3.786  -1.688 -0.457 S1  H5N 36 
H5N H5  H1  H 0  1 N N N -23.214 11.490 -2.172 5.950  -3.576 -0.341 H5  H5N 37 
H5N H6  H2  H 0  1 N N N -23.639 7.171  -4.470 7.873  0.963  -0.353 H6  H5N 38 
H5N H7  H3  H 0  1 N N N -21.682 7.609  -3.065 5.432  0.669  -0.446 H7  H5N 39 
H5N H8  H4  H 0  1 N N N -19.999 8.069  -2.603 3.628  0.545  -1.345 H8  H5N 40 
H5N H10 H5  H 0  1 N N N -19.665 4.325  0.230  3.097  3.671  2.178  H10 H5N 41 
H5N H11 H6  H 0  1 N N N -20.169 5.708  1.259  3.107  2.052  2.919  H11 H5N 42 
H5N H14 H7  H 0  1 N N N -15.838 8.345  0.724  -0.872 -0.353 0.348  H14 H5N 43 
H5N H15 H8  H 0  1 N N N -18.250 9.258  -0.404 1.188  -0.560 0.119  H15 H5N 44 
H5N H3  H9  H 0  1 N N N -26.556 8.350  -4.382 10.094 -0.880 0.803  H3  H5N 45 
H5N H1  H10 H 0  1 N N N -26.120 9.749  -5.420 10.260 -1.805 -0.709 H1  H5N 46 
H5N H2  H11 H 0  1 N N N -25.485 8.113  -5.805 10.045 -0.039 -0.765 H2  H5N 47 
H5N H12 H12 H 0  1 N N N -17.553 5.548  -0.595 1.226  3.155  0.630  H12 H5N 48 
H5N H13 H13 H 0  1 N N N -17.723 7.090  -2.476 1.545  1.992  -1.521 H13 H5N 49 
H5N H4  H14 H 0  1 N N N -25.165 11.031 -3.578 8.389  -3.270 -0.250 H4  H5N 50 
H5N H9  H15 H 0  1 N N N -19.695 5.821  -1.747 3.531  2.600  -0.053 H9  H5N 51 
H5N H16 H17 H 0  1 N N N -21.956 4.410  0.561  5.262  3.079  2.996  H16 H5N 52 
H5N H17 H18 H 0  1 N N N -18.290 6.321  1.476  1.168  1.801  2.598  H17 H5N 53 
H5N H18 H19 H 0  1 N N N -17.109 9.981  -2.322 1.627  -1.525 -2.023 H18 H5N 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H5N C1  C2  SING N N 1  
H5N C2  C5  DOUB Y N 2  
H5N C2  C3  SING Y N 3  
H5N C5  C6  SING Y N 4  
H5N C3  C4  DOUB Y N 5  
H5N C6  C7  DOUB Y N 6  
H5N C4  C7  SING Y N 7  
H5N C7  S1  SING N N 8  
H5N O4  C21 SING N N 9  
H5N N6  N5  DOUB Y N 10 
H5N N6  N1  SING Y N 11 
H5N N5  C14 SING Y N 12 
H5N F1  C16 SING N N 13 
H5N C8  S1  SING N N 14 
H5N C8  C21 SING N N 15 
H5N C8  O1  SING N N 16 
H5N C12 C21 SING N N 17 
H5N C12 N1  SING N N 18 
H5N C12 C11 SING N N 19 
H5N N1  C13 SING Y N 20 
H5N C9  O1  SING N N 21 
H5N C9  C11 SING N N 22 
H5N C9  C10 SING N N 23 
H5N C14 C13 DOUB Y N 24 
H5N C14 C15 SING N N 25 
H5N C16 C15 DOUB Y N 26 
H5N C16 C17 SING Y N 27 
H5N F2  C17 SING N N 28 
H5N C11 O3  SING N N 29 
H5N O2  C10 SING N N 30 
H5N C15 C20 SING Y N 31 
H5N C17 C18 DOUB Y N 32 
H5N N4  N3  DOUB N N 33 
H5N C20 F4  SING N N 34 
H5N C20 C19 DOUB Y N 35 
H5N C18 C19 SING Y N 36 
H5N C18 N2  SING N N 37 
H5N N3  N2  DOUB N N 38 
H5N C19 F3  SING N N 39 
H5N C4  H5  SING N N 40 
H5N C5  H6  SING N N 41 
H5N C6  H7  SING N N 42 
H5N C8  H8  SING N N 43 
H5N C10 H10 SING N N 44 
H5N C10 H11 SING N N 45 
H5N C13 H14 SING N N 46 
H5N C21 H15 SING N N 47 
H5N C1  H3  SING N N 48 
H5N C1  H1  SING N N 49 
H5N C1  H2  SING N N 50 
H5N C11 H12 SING N N 51 
H5N C12 H13 SING N N 52 
H5N C3  H4  SING N N 53 
H5N C9  H9  SING N N 54 
H5N O2  H16 SING N N 55 
H5N O3  H17 SING N N 56 
H5N O4  H18 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H5N InChI            InChI                1.03  "InChI=1S/C21H18F4N6O4S/c1-8-2-4-9(5-3-8)36-21-20(34)18(19(33)11(7-32)35-21)31-6-10(27-30-31)12-13(22)15(24)17(28-29-26)16(25)14(12)23/h2-6,11,18-21,32-34H,7H2,1H3/t11-,18+,19+,20-,21+/m1/s1" 
H5N InChIKey         InChI                1.03  FIXMLRNYDRGIEZ-WZZIOWGKSA-N                                                                                                                                                                     
H5N SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(S[C@@H]2O[C@H](CO)[C@H](O)[C@@H]([C@H]2O)n3cc(nn3)c4c(F)c(F)c(N=[N+]=[N-])c(F)c4F)cc1"                                                                                                  
H5N SMILES           CACTVS               3.385 "Cc1ccc(S[CH]2O[CH](CO)[CH](O)[CH]([CH]2O)n3cc(nn3)c4c(F)c(F)c(N=[N+]=[N-])c(F)c4F)cc1"                                                                                                         
H5N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1)S[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)n3cc(nn3)c4c(c(c(c(c4F)F)N=[N+]=[N-])F)F)O"                                                                                                 
H5N SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1)SC2C(C(C(C(O2)CO)O)n3cc(nn3)c4c(c(c(c(c4F)F)N=[N+]=[N-])F)F)O"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
H5N "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},4~{S},5~{R},6~{S})-4-[4-[4-azido-2,3,5,6-tetrakis(fluoranyl)phenyl]-1,2,3-triazol-1-yl]-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-oxane-3,5-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H5N "Create component" 2018-11-16 EBI  
H5N "Initial release"  2019-01-23 RCSB 
# 
