data_GYN
# 
_chem_comp.id                                    GYN 
_chem_comp.name                                  "GYMNODIMINE A" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H47 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-12-04 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        509.720 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GYN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2X00 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GYN O6   O6   O 0 1 N N N -21.257 12.323 -12.060 -7.253 -1.266 1.504  O6   GYN 1  
GYN C5   C5   C 0 1 N N N -21.326 11.226 -11.516 -6.503 -0.848 0.655  C5   GYN 2  
GYN O1   O1   O 0 1 N N N -22.052 11.039 -10.277 -5.170 -0.763 0.778  O1   GYN 3  
GYN C2   C2   C 0 1 N N S -22.037 9.636  -10.006 -4.553 -0.696 -0.542 C2   GYN 4  
GYN C3   C3   C 0 1 N N N -20.944 9.003  -10.881 -5.604 0.016  -1.423 C3   GYN 5  
GYN C4   C4   C 0 1 N N S -20.725 9.958  -12.045 -6.925 -0.347 -0.709 C4   GYN 6  
GYN C7   C7   C 0 1 N N N -19.267 10.124 -12.465 -7.810 0.893  -0.571 C7   GYN 7  
GYN C8   C8   C 0 1 N N N -21.829 9.437  -8.529  -3.280 0.108  -0.487 C8   GYN 8  
GYN C13  C13  C 0 1 N N N -22.790 8.862  -7.786  -2.203 -0.438 -0.962 C13  GYN 9  
GYN C14  C14  C 0 1 N N N -23.979 8.255  -8.482  -2.272 -1.833 -1.528 C14  GYN 10 
GYN C12  C12  C 0 1 N N S -22.728 8.809  -6.264  -0.886 0.292  -0.959 C12  GYN 11 
GYN C27  C27  C 0 1 N N R -21.626 9.726  -5.668  -0.860 1.341  0.138  C27  GYN 12 
GYN C10  C10  C 0 1 N N N -20.348 9.535  -6.474  -2.063 2.271  -0.092 C10  GYN 13 
GYN C9   C9   C 0 1 N N N -20.531 9.947  -7.934  -3.352 1.481  0.105  C9   GYN 14 
GYN C15  C15  C 0 1 N N N -24.092 9.104  -5.628  0.276  -0.632 -0.976 C15  GYN 15 
GYN C16  C16  C 0 1 N N N -24.924 8.188  -5.086  0.432  -1.747 -0.319 C16  GYN 16 
GYN C19  C19  C 0 1 N N N -24.589 6.718  -5.068  -0.565 -2.282 0.671  C19  GYN 17 
GYN C17  C17  C 0 1 N N S -26.227 8.648  -4.476  1.671  -2.568 -0.622 C17  GYN 18 
GYN O20  O20  O 0 1 N N N -27.329 8.030  -5.154  2.690  -1.713 -1.145 O20  GYN 19 
GYN C18  C18  C 0 1 N N N -26.283 8.248  -3.003  2.177  -3.236 0.655  C18  GYN 20 
GYN C21  C21  C 0 1 N N N -25.959 9.409  -2.069  3.678  -2.958 0.808  C21  GYN 21 
GYN C43  C43  C 0 1 N N S -24.708 9.110  -1.256  3.914  -1.458 0.642  C43  GYN 22 
GYN C47  C47  C 0 1 N N N -24.522 10.012 -0.043  4.959  -0.955 1.657  C47  GYN 23 
GYN C48  C48  C 0 1 N N R -23.824 9.115  0.972   5.754  0.103  0.863  C48  GYN 24 
GYN C49  C49  C 0 1 N N N -24.652 8.975  2.246   7.256  -0.170 0.976  C49  GYN 25 
GYN O43  O43  O 0 1 N N N -24.662 7.776  -0.728  4.434  -1.178 -0.666 O43  GYN 26 
GYN C37  C37  C 0 1 N N R -23.672 7.752  0.303   5.299  -0.037 -0.593 C37  GYN 27 
GYN C36  C36  C 0 1 N N N -22.300 7.543  -0.292  4.539  1.184  -1.037 C36  GYN 28 
GYN C38  C38  C 0 1 N N N -21.142 7.133  0.582   5.142  2.101  -2.071 C38  GYN 29 
GYN C35  C35  C 0 1 N N N -22.148 7.704  -1.624  3.357  1.451  -0.536 C35  GYN 30 
GYN C34  C34  C 0 1 N N N -20.862 7.551  -2.404  2.585  2.663  -0.989 C34  GYN 31 
GYN C33  C33  C 0 1 N N N -21.108 7.826  -3.885  1.116  2.304  -1.226 C33  GYN 32 
GYN C32  C32  C 0 1 N N N -21.296 9.294  -4.251  0.417  2.120  0.092  C32  GYN 33 
GYN N31  N31  N 0 1 N N N -21.141 10.174 -3.350  0.982  2.620  1.116  N31  GYN 34 
GYN C30  C30  C 0 1 N N N -21.633 11.543 -3.227  0.511  2.482  2.480  C30  GYN 35 
GYN C46  C46  C 0 1 N N N -22.554 11.805 -4.415  -0.863 1.834  2.570  C46  GYN 36 
GYN C28  C28  C 0 1 N N N -22.017 11.215 -5.720  -1.000 0.716  1.529  C28  GYN 37 
GYN H4   H4   H 0 1 N N N -21.180 9.596  -12.979 -7.450 -1.131 -1.255 H4   GYN 38 
GYN H2   H2   H 0 1 N N N -22.986 9.141  -10.258 -4.355 -1.699 -0.920 H2   GYN 39 
GYN H31C H31C H 0 0 N N N -20.015 8.875  -10.306 -5.443 1.094  -1.425 H31C GYN 40 
GYN H32C H32C H 0 0 N N N -21.244 8.005  -11.234 -5.593 -0.381 -2.438 H32C GYN 41 
GYN H71C H71C H 0 0 N N N -19.203 10.164 -13.562 -7.265 1.671  -0.037 H71C GYN 42 
GYN H72C H72C H 0 0 N N N -18.867 11.057 -12.040 -8.085 1.256  -1.561 H72C GYN 43 
GYN H73C H73C H 0 0 N N N -18.680 9.271  -12.095 -8.712 0.635  -0.016 H73C GYN 44 
GYN H91C H91C H 0 0 N N N -19.696 9.534  -8.518  -4.176 2.023  -0.360 H91C GYN 45 
GYN H92C H92C H 0 0 N N N -20.557 11.046 -7.970  -3.549 1.395  1.174  H92C GYN 46 
GYN H141 H141 H 0 0 N N N -24.793 8.107  -7.757  -3.024 -1.868 -2.317 H141 GYN 47 
GYN H142 H142 H 0 0 N N N -24.319 8.929  -9.282  -1.301 -2.107 -1.939 H142 GYN 48 
GYN H143 H143 H 0 0 N N N -23.694 7.285  -8.916  -2.543 -2.533 -0.738 H143 GYN 49 
GYN H12  H12  H 0 1 N N N -22.450 7.775  -6.011  -0.866 0.855  -1.924 H12  GYN 50 
GYN H15  H15  H 0 1 N N N -24.416 10.134 -5.612  1.122  -0.359 -1.632 H15  GYN 51 
GYN H101 H101 H 0 0 N N N -19.555 10.154 -6.030  -2.027 3.096  0.618  H101 GYN 52 
GYN H102 H102 H 0 0 N N N -20.083 8.468  -6.449  -2.032 2.663  -1.109 H102 GYN 53 
GYN H281 H281 H 0 0 N N N -21.116 11.783 -5.993  -1.978 0.244  1.623  H281 GYN 54 
GYN H282 H282 H 0 0 N N N -22.839 11.288 -6.447  -0.215 -0.025 1.680  H282 GYN 55 
GYN H191 H191 H 0 0 N N N -24.507 6.347  -6.100  -1.390 -1.577 0.772  H191 GYN 56 
GYN H192 H192 H 0 0 N N N -23.632 6.567  -4.548  -0.947 -3.240 0.321  H192 GYN 57 
GYN H193 H193 H 0 0 N N N -25.383 6.168  -4.543  -0.080 -2.414 1.639  H193 GYN 58 
GYN H17  H17  H 0 1 N N N -26.290 9.742  -4.572  1.428  -3.334 -1.358 H17  GYN 59 
GYN H20  H20  H 0 1 N N N -28.042 7.893  -4.541  2.488  -1.349 -2.018 H20  GYN 60 
GYN H181 H181 H 0 0 N N N -27.299 7.892  -2.777  1.643  -2.832 1.515  H181 GYN 61 
GYN H182 H182 H 0 0 N N N -25.528 7.465  -2.839  2.011  -4.312 0.594  H182 GYN 62 
GYN H211 H211 H 0 0 N N N -25.791 10.316 -2.668  4.010  -3.274 1.797  H211 GYN 63 
GYN H212 H212 H 0 0 N N N -26.803 9.556  -1.380  4.231  -3.502 0.042  H212 GYN 64 
GYN H43  H43  H 0 1 N N N -23.917 9.276  -2.002  2.977  -0.924 0.793  H43  GYN 65 
GYN H471 H471 H 0 0 N N N -23.911 10.893 -0.288  4.470  -0.501 2.519  H471 GYN 66 
GYN H472 H472 H 0 0 N N N -25.473 10.417 0.333   5.612  -1.770 1.971  H472 GYN 67 
GYN H48  H48  H 0 1 N N N -22.853 9.542  1.263   5.525  1.102  1.233  H48  GYN 68 
GYN H491 H491 H 0 0 N N N -23.982 8.941  3.118   7.473  -1.168 0.597  H491 GYN 69 
GYN H492 H492 H 0 0 N N N -25.331 9.836  2.339   7.804  0.568  0.390  H492 GYN 70 
GYN H493 H493 H 0 0 N N N -25.241 8.047  2.200   7.560  -0.104 2.020  H493 GYN 71 
GYN H37  H37  H 0 1 N N N -23.796 6.930  1.024   6.163  -0.191 -1.242 H37  GYN 72 
GYN H381 H381 H 0 0 N N N -20.235 7.033  -0.033  4.842  1.774  -3.066 H381 GYN 73 
GYN H382 H382 H 0 0 N N N -20.978 7.898  1.356   4.791  3.119  -1.902 H382 GYN 74 
GYN H383 H383 H 0 0 N N N -21.368 6.169  1.061   6.229  2.074  -1.992 H383 GYN 75 
GYN H35  H35  H 0 1 N N N -23.031 7.968  -2.187  2.934  0.800  0.216  H35  GYN 76 
GYN H341 H341 H 0 0 N N N -20.119 8.266  -2.021  2.647  3.437  -0.223 H341 GYN 77 
GYN H342 H342 H 0 0 N N N -20.491 6.522  -2.286  3.018  3.041  -1.915 H342 GYN 78 
GYN H331 H331 H 0 0 N N N -20.235 7.454  -4.442  0.632  3.106  -1.784 H331 GYN 79 
GYN H332 H332 H 0 0 N N N -22.052 7.322  -4.140  1.057  1.379  -1.800 H332 GYN 80 
GYN H301 H301 H 0 0 N N N -22.186 11.664 -2.284  1.223  1.873  3.037  H301 GYN 81 
GYN H302 H302 H 0 0 N N N -20.796 12.257 -3.221  0.464  3.470  2.937  H302 GYN 82 
GYN H461 H461 H 0 0 N N N -23.532 11.348 -4.204  -0.999 1.416  3.567  H461 GYN 83 
GYN H462 H462 H 0 0 N N N -22.628 12.895 -4.547  -1.628 2.589  2.390  H462 GYN 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GYN O6  C5   DOUB N N 1  
GYN C5  O1   SING N N 2  
GYN C5  C4   SING N N 3  
GYN O1  C2   SING N N 4  
GYN C2  C3   SING N N 5  
GYN C2  C8   SING N N 6  
GYN C3  C4   SING N N 7  
GYN C4  C7   SING N N 8  
GYN C8  C13  DOUB N N 9  
GYN C8  C9   SING N N 10 
GYN C13 C14  SING N N 11 
GYN C13 C12  SING N N 12 
GYN C12 C27  SING N N 13 
GYN C12 C15  SING N N 14 
GYN C27 C10  SING N N 15 
GYN C27 C32  SING N N 16 
GYN C27 C28  SING N N 17 
GYN C10 C9   SING N N 18 
GYN C15 C16  DOUB N N 19 
GYN C16 C19  SING N N 20 
GYN C16 C17  SING N N 21 
GYN C17 O20  SING N N 22 
GYN C17 C18  SING N N 23 
GYN C18 C21  SING N N 24 
GYN C21 C43  SING N N 25 
GYN C43 C47  SING N N 26 
GYN C43 O43  SING N N 27 
GYN C47 C48  SING N N 28 
GYN C48 C49  SING N N 29 
GYN C48 C37  SING N N 30 
GYN O43 C37  SING N N 31 
GYN C37 C36  SING N N 32 
GYN C36 C38  SING N N 33 
GYN C36 C35  DOUB N E 34 
GYN C35 C34  SING N N 35 
GYN C34 C33  SING N N 36 
GYN C33 C32  SING N N 37 
GYN C32 N31  DOUB N N 38 
GYN N31 C30  SING N N 39 
GYN C30 C46  SING N N 40 
GYN C46 C28  SING N N 41 
GYN C4  H4   SING N N 42 
GYN C2  H2   SING N N 43 
GYN C3  H31C SING N N 44 
GYN C3  H32C SING N N 45 
GYN C7  H71C SING N N 46 
GYN C7  H72C SING N N 47 
GYN C7  H73C SING N N 48 
GYN C9  H91C SING N N 49 
GYN C9  H92C SING N N 50 
GYN C14 H141 SING N N 51 
GYN C14 H142 SING N N 52 
GYN C14 H143 SING N N 53 
GYN C12 H12  SING N N 54 
GYN C15 H15  SING N N 55 
GYN C10 H101 SING N N 56 
GYN C10 H102 SING N N 57 
GYN C28 H281 SING N N 58 
GYN C28 H282 SING N N 59 
GYN C19 H191 SING N N 60 
GYN C19 H192 SING N N 61 
GYN C19 H193 SING N N 62 
GYN C17 H17  SING N N 63 
GYN O20 H20  SING N N 64 
GYN C18 H181 SING N N 65 
GYN C18 H182 SING N N 66 
GYN C21 H211 SING N E 67 
GYN C21 H212 SING N N 68 
GYN C43 H43  SING N N 69 
GYN C47 H471 SING N N 70 
GYN C47 H472 SING N N 71 
GYN C48 H48  SING N N 72 
GYN C49 H491 SING N N 73 
GYN C49 H492 SING N N 74 
GYN C49 H493 SING N N 75 
GYN C37 H37  SING N N 76 
GYN C38 H381 SING N N 77 
GYN C38 H382 SING N N 78 
GYN C38 H383 SING N N 79 
GYN C35 H35  SING N N 80 
GYN C34 H341 SING N N 81 
GYN C34 H342 SING N N 82 
GYN C33 H331 SING N N 83 
GYN C33 H332 SING N N 84 
GYN C30 H301 SING N N 85 
GYN C30 H302 SING N N 86 
GYN C46 H461 SING N N 87 
GYN C46 H462 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GYN SMILES           ACDLabs              10.04 "O=C5OC(C3=C(C2C=C(C(O)CCC4OC(C(=CCCC1=NCCCC12CC3)C)C(C)C4)C)C)CC5C" 
GYN SMILES_CANONICAL CACTVS               3.352 "C[C@@H]1C[C@@H]2CC[C@H](O)C(=C/[C@H]3C(=C(CC[C@@]34CCCN=C4CC/C=C(C)/[C@@H]1O2)[C@@H]5C[C@H](C)C(=O)O5)C)/C" 
GYN SMILES           CACTVS               3.352 "C[CH]1C[CH]2CC[CH](O)C(=C[CH]3C(=C(CC[C]34CCCN=C4CCC=C(C)[CH]1O2)[CH]5C[CH](C)C(=O)O5)C)C" 
GYN SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C[C@@H]1C[C@@H]2CC[C@@H](/C(=C/[C@H]3C(=C(CC[C@@]34CCCN=C4CC\C=C(\[C@@H]1O2)/C)[C@@H]5C[C@@H](C(=O)O5)C)C)/C)O" 
GYN SMILES           "OpenEye OEToolkits" 1.6.1 "CC1CC2CCC(C(=CC3C(=C(CCC34CCCN=C4CCC=C(C1O2)C)C5CC(C(=O)O5)C)C)C)O" 
GYN InChI            InChI                1.03  
"InChI=1S/C32H47NO4/c1-19-8-6-9-29-32(13-7-15-33-29)14-12-25(28-18-22(4)31(35)37-28)23(5)26(32)17-20(2)27(34)11-10-24-16-21(3)30(19)36-24/h8,17,21-22,24,26-28,30,34H,6-7,9-16,18H2,1-5H3/b19-8+,20-17+/t21-,22+,24+,26+,27+,28+,30+,32+/m1/s1" 
GYN InChIKey         InChI                1.03  LFQBHRXYGKMZFS-XGHAUHBHSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GYN "SYSTEMATIC NAME" ACDLabs 10.04 
"(3S,5S)-5-[(4aR,8aS,9E,11S,14S,16R,17R,18E)-11-hydroxy-8,10,16,18-tetramethyl-3,4,5,6,8a,11,12,13,14,15,16,17,20,21-tetradecahydro-2H-14,17-epoxybenzo[2,3]cyclohexadeca[1,2-b]pyridin-7-yl]-3-methyldihydrofuran-2(3H)-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GYN "Create component"  2009-12-04 EBI  
GYN "Modify descriptor" 2011-06-04 RCSB 
# 
