data_G3N
# 
_chem_comp.id                                    G3N 
_chem_comp.name                                  "(2R,3R,4S,5S)-5-amino-3,4-dihydroxytetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H23 N3 O15 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-04-06 
_chem_comp.pdbx_modified_date                    2016-05-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        535.291 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G3N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5J63 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G3N O2B   O1  O 0 1 N N N 30.874 40.030 -27.595 3.486  0.253  2.465  O2B   G3N 1  
G3N PB    P1  P 0 1 N N N 29.457 40.020 -27.744 3.207  0.737  0.955  PB    G3N 2  
G3N O1B   O2  O 0 1 N N N 29.008 41.306 -28.279 3.726  2.111  0.774  O1B   G3N 3  
G3N O3B   O3  O 0 1 N N N 28.965 38.953 -28.803 3.947  -0.257 -0.073 O3B   G3N 4  
G3N "C1'" C1  C 0 1 N N R 27.727 39.015 -29.490 5.369  -0.384 -0.144 "C1'" G3N 5  
G3N "O5'" O4  O 0 1 N N N 27.919 38.392 -30.764 5.801  -1.411 0.751  "O5'" G3N 6  
G3N "C5'" C2  C 0 1 N N N 26.757 38.177 -31.558 7.216  -1.604 0.778  "C5'" G3N 7  
G3N "C4'" C3  C 0 1 N N S 25.729 37.343 -30.833 7.699  -2.020 -0.614 "C4'" G3N 8  
G3N "N4'" N1  N 0 1 N N N 24.459 37.469 -31.552 9.161  -2.161 -0.605 "N4'" G3N 9  
G3N "C3'" C4  C 0 1 N N S 25.491 37.829 -29.409 7.296  -0.944 -1.628 "C3'" G3N 10 
G3N "O3'" O5  O 0 1 N N N 24.715 38.975 -29.451 7.947  0.286  -1.304 "O3'" G3N 11 
G3N "C2'" C5  C 0 1 N N R 26.722 38.245 -28.646 5.778  -0.750 -1.573 "C2'" G3N 12 
G3N "O2'" O6  O 0 1 N N N 27.318 37.087 -28.070 5.127  -1.962 -1.960 "O2'" G3N 13 
G3N O3A   O7  O 0 1 N N N 28.723 39.623 -26.421 1.622  0.720  0.670  O3A   G3N 14 
G3N PA    P2  P 0 1 N N N 29.029 38.386 -25.466 0.412  1.722  1.020  PA    G3N 15 
G3N O1A   O8  O 0 1 N N N 28.735 37.137 -26.083 0.823  3.113  0.725  O1A   G3N 16 
G3N O2A   O9  O 0 1 N N N 28.104 38.465 -24.370 0.041  1.592  2.582  O2A   G3N 17 
G3N O5D   O10 O 0 1 N N N 30.474 38.363 -24.899 -0.874 1.342  0.130  O5D   G3N 18 
G3N C5D   C6  C 0 1 N N N 31.046 39.488 -24.272 -2.078 2.112  0.133  C5D   G3N 19 
G3N C4D   C7  C 0 1 N N R 31.735 39.105 -22.987 -3.093 1.476  -0.819 C4D   G3N 20 
G3N C3D   C8  C 0 1 N N S 32.470 40.292 -22.442 -4.356 2.359  -0.928 C3D   G3N 21 
G3N O3D   O11 O 0 1 N N N 32.764 40.085 -21.070 -4.302 3.168  -2.105 O3D   G3N 22 
G3N C2D   C9  C 0 1 N N R 33.728 40.271 -23.269 -5.517 1.344  -1.021 C2D   G3N 23 
G3N O2D   O12 O 0 1 N N N 34.775 40.996 -22.683 -6.215 1.495  -2.259 O2D   G3N 24 
G3N O4D   O13 O 0 1 N N N 32.773 38.248 -23.305 -3.566 0.220  -0.285 O4D   G3N 25 
G3N C1D   C10 C 0 1 N N R 34.034 38.819 -23.189 -4.818 -0.032 -0.958 C1D   G3N 26 
G3N N1    N2  N 0 1 N N N 34.834 38.289 -24.262 -5.628 -0.981 -0.190 N1    G3N 27 
G3N C6    C11 C 0 1 N N N 34.371 38.316 -25.490 -5.846 -0.761 1.143  C6    G3N 28 
G3N C5    C12 C 0 1 N N N 35.153 37.775 -26.490 -6.597 -1.632 1.850  C5    G3N 29 
G3N C4    C13 C 0 1 N N N 36.352 37.190 -26.202 -7.146 -2.760 1.194  C4    G3N 30 
G3N O4    O14 O 0 1 N N N 37.065 36.723 -27.071 -7.827 -3.559 1.810  O4    G3N 31 
G3N N3    N3  N 0 1 N N N 36.779 37.179 -24.976 -6.908 -2.941 -0.121 N3    G3N 32 
G3N C2    C14 C 0 1 N N N 36.045 37.687 -24.019 -6.155 -2.056 -0.802 C2    G3N 33 
G3N O2    O15 O 0 1 N N N 36.499 37.635 -22.893 -5.953 -2.229 -1.988 O2    G3N 34 
G3N H1    H1  H 0 1 N N N 31.216 40.870 -27.876 3.172  -0.641 2.656  H1    G3N 35 
G3N H2    H2  H 0 1 N N N 27.390 40.056 -29.608 5.833  0.562  0.136  H2    G3N 36 
G3N H3    H3  H 0 1 N N N 27.049 37.658 -32.483 7.705  -0.675 1.070  H3    G3N 37 
G3N H4    H4  H 0 1 N N N 26.312 39.151 -31.809 7.463  -2.386 1.496  H4    G3N 38 
G3N H5    H5  H 0 1 N N N 26.053 36.292 -30.812 7.242  -2.970 -0.890 H5    G3N 39 
G3N H6    H6  H 0 1 N N N 23.759 36.924 -31.091 9.452  -2.862 0.060  H6    G3N 40 
G3N H7    H7  H 0 1 N N N 24.178 38.429 -31.567 9.510  -2.372 -1.528 H7    G3N 41 
G3N H9    H9  H 0 1 N N N 24.977 37.035 -28.848 7.588  -1.260 -2.630 H9    G3N 42 
G3N H10   H10 H 0 1 N N N 24.561 39.286 -28.567 7.737  1.013  -1.906 H10   G3N 43 
G3N H11   H11 H 0 1 N N N 26.398 38.912 -27.834 5.488  0.052  -2.252 H11   G3N 44 
G3N H12   H12 H 0 1 N N N 27.826 37.338 -27.307 4.162  -1.913 -1.944 H12   G3N 45 
G3N H13   H13 H 0 1 N N N 27.563 37.684 -24.355 -0.237 0.704  2.847  H13   G3N 46 
G3N H14   H14 H 0 1 N N N 31.782 39.942 -24.952 -2.492 2.135  1.141  H14   G3N 47 
G3N H15   H15 H 0 1 N N N 30.253 40.217 -24.050 -1.860 3.128  -0.194 H15   G3N 48 
G3N H16   H16 H 0 1 N N N 31.027 38.691 -22.254 -2.648 1.328  -1.803 H16   G3N 49 
G3N H17   H17 H 0 1 N N N 31.903 41.219 -22.612 -4.462 2.984  -0.041 H17   G3N 50 
G3N H18   H18 H 0 1 N N N 31.958 40.102 -20.567 -5.070 3.743  -2.222 H18   G3N 51 
G3N H19   H19 H 0 1 N N N 33.525 40.581 -24.305 -6.200 1.464  -0.181 H19   G3N 52 
G3N H20   H20 H 0 1 N N N 34.584 41.925 -22.732 -6.673 2.342  -2.351 H20   G3N 53 
G3N H21   H21 H 0 1 N N N 34.491 38.586 -22.216 -4.639 -0.413 -1.964 H21   G3N 54 
G3N H22   H22 H 0 1 N N N 33.407 38.749 -25.711 -5.419 0.105  1.628  H22   G3N 55 
G3N H23   H23 H 0 1 N N N 34.812 37.815 -27.514 -6.777 -1.471 2.903  H23   G3N 56 
G3N H24   H24 H 0 1 N N N 37.671 36.781 -24.762 -7.280 -3.711 -0.578 H24   G3N 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G3N "C5'" "C4'" SING N N 1  
G3N "C5'" "O5'" SING N N 2  
G3N "N4'" "C4'" SING N N 3  
G3N "C4'" "C3'" SING N N 4  
G3N "O5'" "C1'" SING N N 5  
G3N "C1'" O3B   SING N N 6  
G3N "C1'" "C2'" SING N N 7  
G3N "O3'" "C3'" SING N N 8  
G3N "C3'" "C2'" SING N N 9  
G3N O3B   PB    SING N N 10 
G3N "C2'" "O2'" SING N N 11 
G3N O1B   PB    DOUB N N 12 
G3N PB    O2B   SING N N 13 
G3N PB    O3A   SING N N 14 
G3N O4    C4    DOUB N N 15 
G3N C5    C4    SING N N 16 
G3N C5    C6    DOUB N N 17 
G3N O3A   PA    SING N N 18 
G3N C4    N3    SING N N 19 
G3N O1A   PA    DOUB N N 20 
G3N C6    N1    SING N N 21 
G3N PA    O5D   SING N N 22 
G3N PA    O2A   SING N N 23 
G3N N3    C2    SING N N 24 
G3N O5D   C5D   SING N N 25 
G3N C5D   C4D   SING N N 26 
G3N N1    C2    SING N N 27 
G3N N1    C1D   SING N N 28 
G3N C2    O2    DOUB N N 29 
G3N O4D   C1D   SING N N 30 
G3N O4D   C4D   SING N N 31 
G3N C2D   C1D   SING N N 32 
G3N C2D   O2D   SING N N 33 
G3N C2D   C3D   SING N N 34 
G3N C4D   C3D   SING N N 35 
G3N C3D   O3D   SING N N 36 
G3N O2B   H1    SING N N 37 
G3N "C1'" H2    SING N N 38 
G3N "C5'" H3    SING N N 39 
G3N "C5'" H4    SING N N 40 
G3N "C4'" H5    SING N N 41 
G3N "N4'" H6    SING N N 42 
G3N "N4'" H7    SING N N 43 
G3N "C3'" H9    SING N N 44 
G3N "O3'" H10   SING N N 45 
G3N "C2'" H11   SING N N 46 
G3N "O2'" H12   SING N N 47 
G3N O2A   H13   SING N N 48 
G3N C5D   H14   SING N N 49 
G3N C5D   H15   SING N N 50 
G3N C4D   H16   SING N N 51 
G3N C3D   H17   SING N N 52 
G3N O3D   H18   SING N N 53 
G3N C2D   H19   SING N N 54 
G3N O2D   H20   SING N N 55 
G3N C1D   H21   SING N N 56 
G3N C6    H22   SING N N 57 
G3N C5    H23   SING N N 58 
G3N N3    H24   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G3N SMILES           ACDLabs              12.01 "OP(OP(OCC1C(O)C(C(O1)N2C(NC(C=C2)=O)=O)O)(O)=O)(=O)OC3C(C(C(CO3)N)O)O" 
G3N InChI            InChI                1.03  
"InChI=1S/C14H23N3O15P2/c15-5-3-28-13(11(22)8(5)19)31-34(26,27)32-33(24,25)29-4-6-9(20)10(21)12(30-6)17-2-1-7(18)16-14(17)23/h1-2,5-6,8-13,19-22H,3-4,15H2,(H,24,25)(H,26,27)(H,16,18,23)/t5-,6+,8-,9+,10+,11+,12+,13+/m0/s1" 
G3N InChIKey         InChI                1.03  GWBAKYBSWHQNMQ-IAZOVDBXSA-N 
G3N SMILES_CANONICAL CACTVS               3.385 "N[C@H]1CO[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](O)[C@H]1O" 
G3N SMILES           CACTVS               3.385 "N[CH]1CO[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH]1O" 
G3N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C1[C@@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)O)O)N" 
G3N SMILES           "OpenEye OEToolkits" 2.0.4 "C1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G3N "SYSTEMATIC NAME" ACDLabs              12.01 
"(2R,3R,4S,5S)-5-amino-3,4-dihydroxytetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"       
G3N "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 
"[(2~{R},3~{R},4~{S},5~{S})-5-azanyl-3,4-bis(oxidanyl)oxan-2-yl] [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G3N "Create component" 2016-04-06 RCSB 
G3N "Initial release"  2016-05-25 RCSB 
# 
