data_DVN
# 
_chem_comp.id                                    DVN 
_chem_comp.name                                  "[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5S)-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H24 N5 O17 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-06-12 
_chem_comp.pdbx_modified_date                    2013-03-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        639.296 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DVN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4F46 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DVN "O3'" "O3'" O 0 1 N N N -402.500 -933.545 -2.700 7.877  2.835  -1.297 "O3'" DVN 1  
DVN "C3'" "C3'" C 0 1 N N S -401.681 -933.497 -1.463 8.169  1.713  -0.462 "C3'" DVN 2  
DVN "C2'" "C2'" C 0 1 N N R -401.365 -932.074 -0.977 8.972  2.158  0.781  "C2'" DVN 3  
DVN "O2'" "O2'" O 0 1 N N N -401.218 -931.172 -2.085 9.200  3.568  0.752  "O2'" DVN 4  
DVN "C1'" "C1'" C 0 1 N N S -402.588 -931.733 -0.109 8.061  1.781  1.970  "C1'" DVN 5  
DVN "O1'" "O1'" O 0 1 N N N -403.641 -931.159 -0.881 7.270  2.904  2.366  "O1'" DVN 6  
DVN "O4'" "O4'" O 0 1 N N N -403.108 -932.985 0.389  7.216  0.723  1.468  "O4'" DVN 7  
DVN "C4'" "C4'" C 0 1 N N R -402.388 -934.096 -0.244 6.868  1.121  0.123  "C4'" DVN 8  
DVN "C5'" "C5'" C 0 1 N N N -401.359 -934.586 0.758  6.422  -0.095 -0.692 "C5'" DVN 9  
DVN "O5'" "O5'" O 0 1 N N N -402.158 -934.922 1.922  5.160  -0.556 -0.208 "O5'" DVN 10 
DVN PBM   PBM   P 0 1 N N N -402.345 -936.438 2.530  4.389  -1.823 -0.836 PBM   DVN 11 
DVN OAK   OAK   O 0 1 N N N -400.878 -937.110 2.629  5.253  -3.157 -0.581 OAK   DVN 12 
DVN OAC   OAC   O 0 1 N N N -403.278 -937.222 1.667  4.212  -1.620 -2.291 OAC   DVN 13 
DVN OAY   OAY   O 0 1 N N N -402.996 -936.313 3.996  2.947  -1.975 -0.136 OAY   DVN 14 
DVN PBN   PBN   P 0 1 N N N -402.439 -935.432 5.240  1.612  -2.799 -0.494 PBN   DVN 15 
DVN OAL   OAL   O 0 1 N N N -401.550 -936.478 6.106  1.790  -4.333 -0.039 OAL   DVN 16 
DVN OAD   OAD   O 0 1 N N N -403.622 -934.928 5.981  1.373  -2.742 -1.954 OAD   DVN 17 
DVN OAU   OAU   O 0 1 N N N -401.482 -934.243 4.700  0.358  -2.152 0.281  OAU   DVN 18 
DVN CAP   CAP   C 0 1 N N N -401.964 -932.925 4.338  -0.988 -2.594 0.089  CAP   DVN 19 
DVN CBH   CBH   C 0 1 N N R -400.865 -931.900 4.634  -1.926 -1.771 0.974  CBH   DVN 20 
DVN OAW   OAW   O 0 1 N N N -400.769 -931.877 6.074  -1.944 -0.404 0.529  OAW   DVN 21 
DVN CBF   CBF   C 0 1 N N R -399.494 -932.348 4.119  -3.365 -2.310 0.856  CBF   DVN 22 
DVN OAH   OAH   O 0 1 N N N -398.696 -931.219 3.777  -3.842 -2.743 2.131  OAH   DVN 23 
DVN CBI   CBI   C 0 1 N N R -398.856 -933.036 5.324  -4.185 -1.096 0.354  CBI   DVN 24 
DVN OAX   OAX   O 0 1 N N N -397.403 -933.006 5.240  -5.447 -1.024 1.019  OAX   DVN 25 
DVN PBL   PBL   P 0 1 N N N -396.572 -934.383 5.488  -6.854 -1.059 0.237  PBL   DVN 26 
DVN OAI   OAI   O 0 1 N N N -395.016 -933.926 5.549  -6.987 0.254  -0.687 OAI   DVN 27 
DVN OAJ   OAJ   O 0 1 N N N -396.767 -935.274 4.140  -6.915 -2.269 -0.613 OAJ   DVN 28 
DVN OAB   OAB   O 0 1 N N N -397.038 -935.105 6.708  -8.060 -1.089 1.302  OAB   DVN 29 
DVN CBJ   CBJ   C 0 1 N N R -399.390 -932.148 6.447  -3.279 0.096  0.756  CBJ   DVN 30 
DVN N9    N9    N 0 1 Y N N -399.495 -932.820 7.771  -3.547 1.257  -0.096 N9    DVN 31 
DVN C8    C8    C 0 1 Y N N -399.948 -934.046 8.041  -2.921 1.558  -1.269 C8    DVN 32 
DVN N7    N7    N 0 1 Y N N -399.900 -934.233 9.364  -3.407 2.661  -1.762 N7    DVN 33 
DVN C5    C5    C 0 1 Y N N -399.415 -933.117 9.918  -4.372 3.136  -0.939 C5    DVN 34 
DVN C4    C4    C 0 1 Y N N -399.177 -932.234 8.926  -4.477 2.238  0.138  C4    DVN 35 
DVN N3    N3    N 0 1 Y N N -398.688 -931.002 9.180  -5.368 2.478  1.094  N3    DVN 36 
DVN C2    C2    C 0 1 Y N N -398.426 -930.639 10.498 -6.145 3.539  1.036  C2    DVN 37 
DVN N1    N1    N 0 1 Y N N -398.693 -931.576 11.508 -6.085 4.409  0.045  N1    DVN 38 
DVN C6    C6    C 0 1 Y N N -399.177 -932.787 11.195 -5.220 4.256  -0.953 C6    DVN 39 
DVN N6    N6    N 0 1 N N N -399.443 -933.710 12.138 -5.166 5.172  -1.989 N6    DVN 40 
DVN H1    H1    H 0 1 N N N -402.656 -934.450 -2.942 8.661  3.283  -1.643 H1    DVN 41 
DVN H2    H2    H 0 1 N N N -400.735 -934.035 -1.627 8.719  0.956  -1.021 H2    DVN 42 
DVN H3    H3    H 0 1 N N N -400.459 -932.087 -0.353 9.917  1.619  0.838  H3    DVN 43 
DVN H4    H4    H 0 1 N N N -401.023 -930.300 -1.761 9.700  3.902  1.509  H4    DVN 44 
DVN H5    H5    H 0 1 N N N -402.287 -931.071 0.716  8.659  1.423  2.808  H5    DVN 45 
DVN H6    H6    H 0 1 N N N -404.378 -930.961 -0.315 6.678  2.726  3.110  H6    DVN 46 
DVN H7    H7    H 0 1 N N N -403.068 -934.907 -0.543 6.082  1.875  0.142  H7    DVN 47 
DVN H8    H8    H 0 1 N N N -400.828 -935.470 0.376  6.328  0.187  -1.741 H8    DVN 48 
DVN H9    H9    H 0 1 N N N -400.632 -933.795 0.994  7.162  -0.889 -0.594 H9    DVN 49 
DVN H10   H10   H 0 1 N N N -400.858 -937.906 2.111  5.409  -3.352 0.354  H10   DVN 50 
DVN H11   H11   H 0 1 N N N -401.944 -936.596 6.962  1.950  -4.447 0.907  H11   DVN 51 
DVN H12   H12   H 0 1 N N N -402.862 -932.685 4.926  -1.268 -2.464 -0.956 H12   DVN 52 
DVN H13   H13   H 0 1 N N N -402.211 -932.903 3.266  -1.066 -3.648 0.358  H13   DVN 53 
DVN H14   H14   H 0 1 N N N -401.132 -930.915 4.223  -1.594 -1.818 2.011  H14   DVN 54 
DVN H15   H15   H 0 1 N N N -399.604 -933.052 3.281  -3.409 -3.125 0.134  H15   DVN 55 
DVN H16   H16   H 0 1 N N N -397.850 -931.513 3.460  -3.328 -3.464 2.520  H16   DVN 56 
DVN H17   H17   H 0 1 N N N -399.236 -934.063 5.429  -4.318 -1.137 -0.727 H17   DVN 57 
DVN H18   H18   H 0 1 N N N -394.554 -934.271 4.794  -6.955 1.086  -0.195 H18   DVN 58 
DVN H19   H19   H 0 1 N N N -397.366 -935.962 6.463  -8.940 -1.111 0.900  H19   DVN 59 
DVN H20   H20   H 0 1 N N N -398.801 -931.222 6.519  -3.421 0.349  1.807  H20   DVN 60 
DVN H21   H21   H 0 1 N N N -400.295 -934.765 7.314  -2.138 0.969  -1.723 H21   DVN 61 
DVN H22   H22   H 0 1 N N N -398.028 -929.664 10.737 -6.859 3.704  1.830  H22   DVN 62 
DVN H23   H23   H 0 1 N N N -399.224 -933.338 13.040 -4.536 5.044  -2.717 H23   DVN 63 
DVN H24   H24   H 0 1 N N N -400.413 -933.952 12.103 -5.756 5.941  -1.988 H24   DVN 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DVN "O3'" "C3'" SING N N 1  
DVN "O2'" "C2'" SING N N 2  
DVN "C3'" "C2'" SING N N 3  
DVN "C3'" "C4'" SING N N 4  
DVN "C2'" "C1'" SING N N 5  
DVN "O1'" "C1'" SING N N 6  
DVN "C4'" "O4'" SING N N 7  
DVN "C4'" "C5'" SING N N 8  
DVN "C1'" "O4'" SING N N 9  
DVN "C5'" "O5'" SING N N 10 
DVN OAC   PBM   DOUB N N 11 
DVN "O5'" PBM   SING N N 12 
DVN PBM   OAK   SING N N 13 
DVN PBM   OAY   SING N N 14 
DVN OAH   CBF   SING N N 15 
DVN OAY   PBN   SING N N 16 
DVN CBF   CBH   SING N N 17 
DVN CBF   CBI   SING N N 18 
DVN OAJ   PBL   DOUB N N 19 
DVN CAP   CBH   SING N N 20 
DVN CAP   OAU   SING N N 21 
DVN CBH   OAW   SING N N 22 
DVN OAU   PBN   SING N N 23 
DVN PBN   OAD   DOUB N N 24 
DVN PBN   OAL   SING N N 25 
DVN OAX   CBI   SING N N 26 
DVN OAX   PBL   SING N N 27 
DVN CBI   CBJ   SING N N 28 
DVN PBL   OAI   SING N N 29 
DVN PBL   OAB   SING N N 30 
DVN OAW   CBJ   SING N N 31 
DVN CBJ   N9    SING N N 32 
DVN N9    C8    SING Y N 33 
DVN N9    C4    SING Y N 34 
DVN C8    N7    DOUB Y N 35 
DVN C4    N3    DOUB Y N 36 
DVN C4    C5    SING Y N 37 
DVN N3    C2    SING Y N 38 
DVN N7    C5    SING Y N 39 
DVN C5    C6    DOUB Y N 40 
DVN C2    N1    DOUB Y N 41 
DVN C6    N1    SING Y N 42 
DVN C6    N6    SING N N 43 
DVN "O3'" H1    SING N N 44 
DVN "C3'" H2    SING N N 45 
DVN "C2'" H3    SING N N 46 
DVN "O2'" H4    SING N N 47 
DVN "C1'" H5    SING N N 48 
DVN "O1'" H6    SING N N 49 
DVN "C4'" H7    SING N N 50 
DVN "C5'" H8    SING N N 51 
DVN "C5'" H9    SING N N 52 
DVN OAK   H10   SING N N 53 
DVN OAL   H11   SING N N 54 
DVN CAP   H12   SING N N 55 
DVN CAP   H13   SING N N 56 
DVN CBH   H14   SING N N 57 
DVN CBF   H15   SING N N 58 
DVN OAH   H16   SING N N 59 
DVN CBI   H17   SING N N 60 
DVN OAI   H18   SING N N 61 
DVN OAB   H19   SING N N 62 
DVN CBJ   H20   SING N N 63 
DVN C8    H21   SING N N 64 
DVN C2    H22   SING N N 65 
DVN N6    H23   SING N N 66 
DVN N6    H24   SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DVN SMILES           ACDLabs              12.01 "O=P(O)(O)OC3C(O)C(OC3n1c2ncnc(N)c2nc1)COP(=O)(O)OP(=O)(O)OCC4OC(O)C(O)C4O" 
DVN InChI            InChI                1.03  
"InChI=1S/C15H24N5O17P3/c16-12-7-13(18-3-17-12)20(4-19-7)14-11(36-38(25,26)27)9(22)6(34-14)2-33-40(30,31)37-39(28,29)32-1-5-8(21)10(23)15(24)35-5/h3-6,8-11,14-15,21-24H,1-2H2,(H,28,29)(H,30,31)(H2,16,17,18)(H2,25,26,27)/t5-,6-,8-,9-,10-,11-,14-,15+/m1/s1" 
DVN InChIKey         InChI                1.03  ICNHOLCERMYLRZ-ZQSHOCFMSA-N 
DVN SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O[P](O)(O)=O" 
DVN SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O[P](O)(O)=O" 
DVN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@H](O4)O)O)O)O)OP(=O)(O)O)N" 
DVN SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)O)O)O)O)OP(=O)(O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DVN "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl [(2R,3S,4R,5S)-3,4,5-trihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
DVN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5S)-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"                     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DVN "Create component" 2012-06-12 PDBJ 
DVN "Initial release"  2013-04-03 RCSB 
# 
