data_DKN
# 
_chem_comp.id                                    DKN 
_chem_comp.name                                  "Disorazole Z" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C40 H46 N2 O12" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-01-23 
_chem_comp.pdbx_modified_date                    2018-05-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        746.799 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DKN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6FJM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DKN CAB C1  C 0 1 Y N N 23.061 -28.255 -46.289 -4.577 -4.752 0.474  CAB DKN 1   
DKN CAC C2  C 0 1 Y N N 22.338 -28.794 -45.270 -4.083 -3.489 0.565  CAC DKN 2   
DKN CAE C3  C 0 1 Y N N 24.084 -28.005 -44.419 -2.414 -4.858 0.669  CAE DKN 3   
DKN CAF C4  C 0 1 N N N 25.111 -27.589 -43.486 -1.024 -5.320 0.791  CAF DKN 4   
DKN CAG C5  C 0 1 N N N 25.969 -26.580 -43.746 -0.066 -4.363 0.740  CAG DKN 5   
DKN CAH C6  C 0 1 N N N 26.983 -26.165 -42.802 1.307  -4.626 0.915  CAH DKN 6   
DKN CAI C7  C 0 1 N N N 27.839 -25.158 -43.079 2.154  -3.567 0.880  CAI DKN 7   
DKN CAJ C8  C 0 1 N N N 28.863 -24.727 -42.137 3.591  -3.715 1.096  CAJ DKN 8   
DKN CAK C9  C 0 1 N N N 29.759 -23.735 -42.310 4.363  -2.622 1.043  CAK DKN 9   
DKN CAL C10 C 0 1 N N N 29.940 -22.831 -43.511 3.725  -1.293 0.741  CAL DKN 10  
DKN CAM C11 C 0 1 N N S 28.764 -21.928 -44.007 4.780  -0.183 0.718  CAM DKN 11  
DKN CAO C12 C 0 1 N N S 29.089 -20.891 -45.136 5.644  -0.323 -0.537 CAO DKN 12  
DKN CAP C13 C 0 1 N N S 30.401 -20.104 -44.823 5.739  -1.798 -0.929 CAP DKN 13  
DKN CAQ C14 C 0 1 N N N 29.323 -21.741 -46.414 5.012  0.470  -1.683 CAQ DKN 14  
DKN CAR C15 C 0 1 N N N 27.995 -19.823 -45.238 7.025  0.213  -0.257 CAR DKN 15  
DKN CAS C16 C 0 1 N N N 30.428 -19.573 -43.407 6.751  -1.961 -2.034 CAS DKN 16  
DKN CAU C17 C 0 1 N N N 31.523 -19.525 -42.648 7.802  -2.722 -1.854 CAU DKN 17  
DKN CAV C18 C 0 1 N N N 31.496 -18.994 -41.244 8.814  -2.884 -2.958 CAV DKN 18  
DKN CAW C19 C 0 1 N N N 26.363 -22.496 -43.348 4.826  2.226  0.546  CAW DKN 19  
DKN CAX C20 C 0 1 Y N N 25.176 -23.126 -43.903 4.082  3.506  0.548  CAX DKN 20  
DKN CBA C21 C 0 1 Y N N 23.266 -24.000 -44.028 2.410  4.876  0.651  CBA DKN 21  
DKN CBC C22 C 0 1 Y N N 24.984 -23.472 -45.202 4.573  4.768  0.437  CBC DKN 22  
DKN CBD C23 C 0 1 N N N 21.940 -24.527 -43.759 1.023  5.338  0.777  CBD DKN 23  
DKN CBE C24 C 0 1 N N N 21.309 -25.390 -44.591 0.067  4.378  0.757  CBE DKN 24  
DKN CBF C25 C 0 1 N N N 19.982 -25.921 -44.337 -1.308 4.643  0.926  CBF DKN 25  
DKN CBG C26 C 0 1 N N N 19.391 -26.784 -45.192 -2.154 3.585  0.902  CBG DKN 26  
DKN CBH C27 C 0 1 N N N 18.058 -27.344 -44.977 -3.592 3.735  1.106  CBH DKN 27  
DKN CBI C28 C 0 1 N N N 17.416 -28.207 -45.792 -4.364 2.640  1.059  CBI DKN 28  
DKN CBJ C29 C 0 1 N N N 17.922 -28.792 -47.099 -3.721 1.309  0.778  CBJ DKN 29  
DKN CBK C30 C 0 1 N N S 19.137 -29.778 -47.003 -4.777 0.202  0.724  CBK DKN 30  
DKN CBM C31 C 0 1 N N S 19.414 -30.864 -48.106 -5.622 0.360  -0.541 CBM DKN 31  
DKN CBN C32 C 0 1 N N S 20.437 -31.911 -47.519 -5.808 1.848  -0.848 CBN DKN 32  
DKN CBO C33 C 0 1 N N N 18.080 -31.626 -48.354 -4.914 -0.317 -1.716 CBO DKN 33  
DKN CBP C34 C 0 1 N N N 20.077 -30.196 -49.331 -6.969 -0.281 -0.329 CBP DKN 34  
DKN CBR C35 C 0 1 N N N 21.676 -32.208 -48.344 -6.796 2.009  -1.974 CBR DKN 35  
DKN CBS C36 C 0 1 N N N 22.917 -32.114 -47.850 -7.902 2.684  -1.783 CBS DKN 36  
DKN CBT C37 C 0 1 N N N 24.140 -32.419 -48.665 -8.890 2.846  -2.910 CBT DKN 37  
DKN CBU C38 C 0 1 N N N 21.049 -29.455 -45.364 -4.827 -2.209 0.563  CBU DKN 38  
DKN CBY C39 C 0 1 N N N 27.316 -19.083 -47.433 9.071  0.271  0.964  CBY DKN 39  
DKN CCB C40 C 0 1 N N N 18.294 -29.543 -50.878 -9.005 -0.592 0.869  CCB DKN 40  
DKN NAD N1  N 0 1 Y N N 22.989 -28.624 -44.095 -2.738 -3.580 0.673  NAD DKN 41  
DKN NAZ N2  N 0 1 Y N N 24.087 -23.466 -43.166 2.737  3.598  0.669  NAZ DKN 42  
DKN OAA O1  O 0 1 Y N N 24.210 -27.729 -45.770 -3.526 -5.594 0.540  OAA DKN 43  
DKN OAN O2  O 0 1 N N N 27.453 -22.508 -44.162 4.103  1.097  0.706  OAN DKN 44  
DKN OAT O3  O 0 1 N N N 30.582 -19.027 -45.750 4.463  -2.254 -1.381 OAT DKN 45  
DKN OAY O4  O 0 1 N N N 26.405 -21.990 -42.226 6.032  2.193  0.407  OAY DKN 46  
DKN OBB O5  O 0 1 Y N N 23.749 -24.038 -45.321 3.522  5.610  0.502  OBB DKN 47  
DKN OBL O6  O 0 1 N N N 20.348 -29.191 -46.496 -4.101 -1.079 0.700  OBL DKN 48  
DKN OBQ O7  O 0 1 N N N 19.766 -33.146 -47.249 -4.554 2.416  -1.229 OBQ DKN 49  
DKN OBV O8  O 0 1 N N N 20.602 -30.208 -44.499 -6.036 -2.177 0.442  OBV DKN 50  
DKN OBW O9  O 0 1 N N N 27.086 -19.804 -44.417 7.481  1.097  -0.944 OBW DKN 51  
DKN OBX O10 O 0 1 N N N 27.880 -18.823 -46.153 7.749  -0.293 0.753  OBX DKN 52  
DKN OBZ O11 O 0 1 N N N 21.186 -29.679 -49.230 -7.374 -1.109 -1.111 OBZ DKN 53  
DKN OCA O12 O 0 1 N N N 19.595 -30.064 -50.603 -7.719 0.066  0.728  OCA DKN 54  
DKN HAB H1  H 0 1 N N N 22.775 -28.245 -47.330 -5.616 -5.028 0.372  HAB DKN 55  
DKN HAF H2  H 0 1 N N N 25.194 -28.108 -42.543 -0.789 -6.357 0.900  HAF DKN 56  
DKN HAG H3  H 0 1 N N N 25.896 -26.064 -44.692 -0.379 -3.337 0.551  HAG DKN 57  
DKN HAH H4  H 0 1 N N N 27.057 -26.673 -41.852 1.671  -5.624 1.071  HAH DKN 58  
DKN HAI H5  H 0 1 N N N 27.762 -24.655 -44.032 1.747  -2.581 0.680  HAI DKN 59  
DKN HAJ H6  H 0 1 N N N 28.909 -25.260 -41.199 4.024  -4.680 1.295  HAJ DKN 60  
DKN HAK H7  H 0 1 N N N 30.435 -23.563 -41.486 5.424  -2.697 1.214  HAK DKN 61  
DKN HAM H8  H 0 1 N N N 30.217 -23.480 -44.355 3.233  -1.342 -0.230 HAM DKN 62  
DKN HAL H9  H 0 1 N N N 30.777 -22.157 -43.276 2.984  -1.067 1.508  HAL DKN 63  
DKN HAN H10 H 0 1 N N N 28.624 -21.264 -43.141 5.408  -0.256 1.605  HAN DKN 64  
DKN HAP H11 H 0 1 N N N 31.237 -20.810 -44.933 6.049  -2.385 -0.064 HAP DKN 65  
DKN HAQ H12 H 0 1 N N N 30.125 -22.471 -46.228 3.977  0.154  -1.815 HAQ DKN 66  
DKN HAS H13 H 0 1 N N N 28.396 -22.273 -46.675 5.041  1.534  -1.447 HAS DKN 67  
DKN HAR H14 H 0 1 N N N 29.613 -21.081 -47.245 5.569  0.286  -2.602 HAR DKN 68  
DKN HAT H15 H 0 1 N N N 29.503 -19.210 -42.984 6.610  -1.449 -2.975 HAT DKN 69  
DKN HAU H16 H 0 1 N N N 32.458 -19.879 -43.056 7.943  -3.233 -0.913 HAU DKN 70  
DKN HAV H17 H 0 1 N N N 32.506 -19.050 -40.811 9.234  -1.910 -3.212 HAV DKN 71  
DKN HAW H18 H 0 1 N N N 31.159 -17.947 -41.255 9.611  -3.549 -2.626 HAW DKN 72  
DKN HAX H19 H 0 1 N N N 30.803 -19.596 -40.638 8.328  -3.309 -3.836 HAX DKN 73  
DKN HBC H20 H 0 1 N N N 25.690 -23.324 -46.005 5.610  5.044  0.319  HBC DKN 74  
DKN HBD H21 H 0 1 N N N 21.435 -24.217 -42.856 0.786  6.377  0.865  HBD DKN 75  
DKN HBE H22 H 0 1 N N N 21.820 -25.699 -45.491 0.381  3.347  0.600  HBE DKN 76  
DKN HBF H23 H 0 1 N N N 19.455 -25.619 -43.444 -1.672 5.643  1.069  HBF DKN 77  
DKN HBG H24 H 0 1 N N N 19.931 -27.075 -46.081 -1.745 2.595  0.722  HBG DKN 78  
DKN HBH H25 H 0 1 N N N 17.538 -27.038 -44.081 -4.028 4.701  1.292  HBH DKN 79  
DKN HBI H26 H 0 1 N N N 16.430 -28.517 -45.479 -5.426 2.716  1.218  HBI DKN 80  
DKN HBJ H27 H 0 1 N N N 18.222 -27.954 -47.745 -3.199 1.355  -0.178 HBJ DKN 81  
DKN HBK H28 H 0 1 N N N 17.088 -29.335 -47.567 -3.003 1.083  1.568  HBK DKN 82  
DKN HBL H29 H 0 1 N N N 18.823 -30.413 -46.161 -5.416 0.262  1.605  HBL DKN 83  
DKN HBN H30 H 0 1 N N N 20.784 -31.498 -46.560 -6.183 2.357  0.040  HBN DKN 84  
DKN HBO H31 H 0 1 N N N 17.718 -32.051 -47.406 -3.903 0.080  -1.809 HBO DKN 85  
DKN HBP H32 H 0 1 N N N 17.329 -30.929 -48.754 -4.866 -1.392 -1.541 HBP DKN 86  
DKN HBQ H33 H 0 1 N N N 18.250 -32.437 -49.078 -5.467 -0.123 -2.635 HBQ DKN 87  
DKN HBR H34 H 0 1 N N N 21.551 -32.508 -49.374 -6.592 1.568  -2.938 HBR DKN 88  
DKN HBS H35 H 0 1 N N N 23.043 -31.806 -46.823 -8.106 3.126  -0.819 HBS DKN 89  
DKN HBV H36 H 0 1 N N N 25.039 -32.272 -48.048 -9.742 3.433  -2.565 HBV DKN 90  
DKN HBT H37 H 0 1 N N N 24.099 -33.463 -49.010 -8.410 3.357  -3.744 HBT DKN 91  
DKN HBU H38 H 0 1 N N N 24.178 -31.746 -49.535 -9.234 1.864  -3.235 HBU DKN 92  
DKN HB0 H39 H 0 1 N N N 27.309 -18.157 -48.026 9.547  -0.225 1.810  HB0 DKN 93  
DKN HBY H40 H 0 1 N N N 27.917 -19.845 -47.950 9.675  0.124  0.069  HBY DKN 94  
DKN HBZ H41 H 0 1 N N N 26.286 -19.449 -47.312 8.982  1.337  1.172  HBZ DKN 95  
DKN HCD H42 H 0 1 N N N 18.126 -29.530 -51.965 -9.619 -0.382 -0.007 HCD DKN 96  
DKN HCB H43 H 0 1 N N N 17.536 -30.178 -50.397 -8.855 -1.668 0.958  HCB DKN 97  
DKN HCC H44 H 0 1 N N N 18.218 -28.519 -50.484 -9.508 -0.221 1.763  HCC DKN 98  
DKN HCE H45 H 0 1 N N N 31.384 -18.562 -45.543 4.124  -1.776 -2.151 HCE DKN 99  
DKN HCF H46 H 0 1 N N N 18.987 -32.977 -46.732 -4.161 2.010  -2.014 HCF DKN 100 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DKN CCB OCA SING N N 1   
DKN OCA CBP SING N N 2   
DKN CBP OBZ DOUB N N 3   
DKN CBP CBM SING N N 4   
DKN CBT CBS SING N N 5   
DKN CBO CBM SING N N 6   
DKN CBR CBS DOUB N E 7   
DKN CBR CBN SING N N 8   
DKN CBM CBN SING N N 9   
DKN CBM CBK SING N N 10  
DKN CBN OBQ SING N N 11  
DKN CBY OBX SING N N 12  
DKN CBJ CBK SING N N 13  
DKN CBJ CBI SING N N 14  
DKN CBK OBL SING N N 15  
DKN OBL CBU SING N N 16  
DKN CAQ CAO SING N N 17  
DKN CAB OAA SING Y N 18  
DKN CAB CAC DOUB Y N 19  
DKN OBX CAR SING N N 20  
DKN CBI CBH DOUB N Z 21  
DKN OAA CAE SING Y N 22  
DKN OAT CAP SING N N 23  
DKN CBU CAC SING N N 24  
DKN CBU OBV DOUB N N 25  
DKN OBB CBC SING Y N 26  
DKN OBB CBA SING Y N 27  
DKN CAC NAD SING Y N 28  
DKN CAR CAO SING N N 29  
DKN CAR OBW DOUB N N 30  
DKN CBC CAX DOUB Y N 31  
DKN CBG CBH SING N N 32  
DKN CBG CBF DOUB N E 33  
DKN CAO CAP SING N N 34  
DKN CAO CAM SING N N 35  
DKN CAP CAS SING N N 36  
DKN CBE CBF SING N N 37  
DKN CBE CBD DOUB N E 38  
DKN CAE NAD DOUB Y N 39  
DKN CAE CAF SING N N 40  
DKN OAN CAM SING N N 41  
DKN OAN CAW SING N N 42  
DKN CBA CBD SING N N 43  
DKN CBA NAZ DOUB Y N 44  
DKN CAM CAL SING N N 45  
DKN CAX CAW SING N N 46  
DKN CAX NAZ SING Y N 47  
DKN CAG CAF DOUB N E 48  
DKN CAG CAH SING N N 49  
DKN CAL CAK SING N N 50  
DKN CAS CAU DOUB N E 51  
DKN CAW OAY DOUB N N 52  
DKN CAI CAH DOUB N E 53  
DKN CAI CAJ SING N N 54  
DKN CAU CAV SING N N 55  
DKN CAK CAJ DOUB N Z 56  
DKN CAB HAB SING N N 57  
DKN CAF HAF SING N N 58  
DKN CAG HAG SING N N 59  
DKN CAH HAH SING N N 60  
DKN CAI HAI SING N N 61  
DKN CAJ HAJ SING N N 62  
DKN CAK HAK SING N N 63  
DKN CAL HAM SING N N 64  
DKN CAL HAL SING N N 65  
DKN CAM HAN SING N N 66  
DKN CAP HAP SING N N 67  
DKN CAQ HAQ SING N N 68  
DKN CAQ HAS SING N N 69  
DKN CAQ HAR SING N N 70  
DKN CAS HAT SING N N 71  
DKN CAU HAU SING N N 72  
DKN CAV HAV SING N N 73  
DKN CAV HAW SING N N 74  
DKN CAV HAX SING N N 75  
DKN CBC HBC SING N N 76  
DKN CBD HBD SING N N 77  
DKN CBE HBE SING N N 78  
DKN CBF HBF SING N N 79  
DKN CBG HBG SING N N 80  
DKN CBH HBH SING N N 81  
DKN CBI HBI SING N N 82  
DKN CBJ HBJ SING N N 83  
DKN CBJ HBK SING N N 84  
DKN CBK HBL SING N N 85  
DKN CBN HBN SING N N 86  
DKN CBO HBO SING N N 87  
DKN CBO HBP SING N N 88  
DKN CBO HBQ SING N N 89  
DKN CBR HBR SING N N 90  
DKN CBS HBS SING N N 91  
DKN CBT HBV SING N N 92  
DKN CBT HBT SING N N 93  
DKN CBT HBU SING N N 94  
DKN CBY HB0 SING N N 95  
DKN CBY HBY SING N N 96  
DKN CBY HBZ SING N N 97  
DKN CCB HCD SING N N 98  
DKN CCB HCB SING N N 99  
DKN CCB HCC SING N N 100 
DKN OAT HCE SING N N 101 
DKN OBQ HCF SING N N 102 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DKN InChI            InChI                1.03  
;InChI=1S/C40H46N2O12/c1-7-19-29(43)39(3,37(47)49-5)31-21-15-11-9-13-17-24-34-42-28(26-52-34)36(46)54-32(40(4,38(48)50-6)30(44)20-8-2)22-16-12-10-14-18-23-33-41-27(25-51-33)35(45)53-31/h7-20,23-26,29-32,43-44H,21-22H2,1-6H3/b13-9+,14-10+,15-11-,16-12-,19-7+,20-8+,23-18+,24-17+/t29-,30-,31-,32-,39-,40-/m0/s1
;
DKN InChIKey         InChI                1.03  JPGLRCPHPQBPKN-MEZWVJKXSA-N 
DKN SMILES_CANONICAL CACTVS               3.385 "COC(=O)[C@@](C)([C@@H](O)\C=C\C)[C@@H]1C/C=C\C=C\C=C\c2occ(n2)C(=O)O[C@@H](C/C=C\C=C\C=C\c3occ(n3)C(=O)O1)[C@](C)([C@@H](O)\C=C\C)C(=O)OC" 
DKN SMILES           CACTVS               3.385 "COC(=O)[C](C)([CH](O)C=CC)[CH]1CC=CC=CC=Cc2occ(n2)C(=O)O[CH](CC=CC=CC=Cc3occ(n3)C(=O)O1)[C](C)([CH](O)C=CC)C(=O)OC" 
DKN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C/C=C/[C@H](O)[C@](C(=O)OC)([C@H]1OC(=O)c2nc(oc2)/C=C/C=C/C=C\C[C@H](OC(=O)c3nc(oc3)/C=C/C=C/C=C\C1)[C@@](C(=O)OC)([C@@H](O)/C=C/C)C)C" 
DKN SMILES           "OpenEye OEToolkits" 2.0.6 "CC=CC(C(C)(C1CC=CC=CC=Cc2nc(co2)C(=O)OC(CC=CC=CC=Cc3nc(co3)C(=O)O1)C(C)(C(C=CC)O)C(=O)OC)C(=O)OC)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DKN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
;methyl (~{E},2~{S},3~{S})-2-[(4~{S},6~{Z},8~{E},10~{E},18~{S},20~{Z},22~{E},24~{E})-18-[(~{E},2~{S},3~{S})-1-methoxy-2-methyl-3-oxidanyl-1-oxidanylidene-hex-4-en-2-yl]-2,16-bis(oxidanylidene)-3,13,17,27-tetraoxa-29,30-diazatricyclo[24.2.1.1^{12,15}]triaconta-1(28),6,8,10,12(30),14,20,22,24,26(29)-decaen-4-yl]-2-methyl-3-oxidanyl-hex-4-enoate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DKN "Create component" 2018-01-23 RCSB 
DKN "Initial release"  2018-05-30 RCSB 
# 
