data_C0N
# 
_chem_comp.id                                    C0N 
_chem_comp.name                                  "2-[4-[4-[bis(oxidanylidene)-$l^5-sulfanyl]oxyphenyl]carbonylpiperazin-1-yl]-6-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-N-prop-2-ynyl-pyrimidine-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H25 N8 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2023-05-23 
_chem_comp.pdbx_modified_date                    2024-02-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        549.582 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C0N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JF4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C0N N1  N1  N 0 1 Y N N N N N -1.944 -34.293 2.206  -3.559 -0.687 -0.068 N1  C0N 1  
C0N N3  N2  N 0 1 N N N N N N -0.103 -37.508 2.853  -5.666 -2.408 0.726  N3  C0N 2  
C0N C4  C1  C 0 1 Y N N N N N -1.614 -34.005 4.989  -3.588 1.965  0.454  C4  C0N 3  
C0N C5  C2  C 0 1 N N N N N N -0.580 -36.365 2.121  -5.720 -1.091 1.006  C5  C0N 4  
C0N C6  C3  C 0 1 N N N N N N 0.545  -38.601 2.179  -6.759 -3.290 1.141  C6  C0N 5  
C0N C7  C4  C 0 1 N N N N N N -0.227 -39.040 0.943  -6.464 -4.670 0.720  C7  C0N 6  
C0N C8  C5  C 0 1 N N N N N N -0.822 -39.379 -0.035 -6.228 -5.770 0.385  C8  C0N 7  
C0N C10 C6  C 0 1 Y N N N N N -2.630 -31.685 6.794  -1.336 3.659  -0.316 C10 C0N 8  
C0N C13 C7  C 0 1 N N N N N N -5.331 -29.744 8.216  1.972  5.542  -0.506 C13 C0N 9  
C0N C15 C8  C 0 1 N N N N N N -3.216 -32.157 0.796  -1.666 -1.893 -1.306 C15 C0N 10 
C0N C17 C9  C 0 1 N N N N N N -4.413 -29.993 2.313  0.945  -0.608 -1.307 C17 C0N 11 
C0N C20 C10 C 0 1 Y N N N N N -6.016 -27.923 0.894  3.062  -2.485 -0.985 C20 C0N 12 
C0N C21 C11 C 0 1 Y N N N N N -5.421 -26.719 0.688  3.583  -1.174 -1.410 C21 C0N 13 
C0N C22 C12 C 0 1 Y N N N N N -5.970 -25.454 1.369  4.799  -0.766 -1.003 C22 C0N 14 
C0N C24 C13 C 0 1 Y N N N N N -7.699 -26.888 2.407  5.085  -2.965 0.301  C24 C0N 15 
C0N C1  C14 C 0 1 Y N N N N N -1.073 -35.029 4.334  -4.657 1.163  0.870  C1  C0N 16 
C0N C2  C15 C 0 1 Y N N N N N -1.249 -35.194 2.860  -4.611 -0.197 0.586  C2  C0N 17 
C0N C3  C16 C 0 1 Y N N N N N -2.536 -33.171 2.931  -2.567 0.102  -0.446 C3  C0N 18 
C0N N2  N3  N 0 1 Y N N N N N -2.377 -33.035 4.263  -2.574 1.403  -0.193 N2  C0N 19 
C0N O1  O1  O 0 1 N N N N N N -0.443 -36.292 0.905  -6.675 -0.635 1.603  O1  C0N 20 
C0N N4  N4  N 0 1 N N N N N N -1.413 -33.897 6.411  -3.588 3.326  0.715  N4  C0N 21 
C0N C9  C17 C 0 1 Y N N N N N -2.152 -32.953 7.206  -2.469 4.101  0.387  C9  C0N 22 
C0N C11 C18 C 0 1 Y N N N N N -3.279 -31.096 7.856  -0.484 4.703  -0.429 C11 C0N 23 
C0N N5  N5  N 0 1 Y N N N N N -3.208 -31.984 8.940  -1.051 5.767  0.178  N5  C0N 24 
C0N N6  N6  N 0 1 Y N N N N N -2.509 -33.130 8.527  -2.295 5.368  0.682  N6  C0N 25 
C0N C12 C19 C 0 1 N N N N N N -4.030 -29.606 7.921  0.860  4.682  -1.110 C12 C0N 26 
C0N C14 C20 C 0 1 N N N N N N -4.219 -29.020 6.728  1.312  5.959  -1.822 C14 C0N 27 
C0N N7  N7  N 0 1 N N N N N N -3.297 -32.189 2.230  -1.491 -0.446 -1.123 N7  C0N 28 
C0N C16 C21 C 0 1 N N N N N N -4.384 -31.388 0.195  -0.552 -2.428 -2.212 C16 C0N 29 
C0N N8  N8  N 0 1 N N N N N N -4.756 -30.219 0.941  0.744  -2.025 -1.646 N8  C0N 30 
C0N C18 C22 C 0 1 N N N N N N -4.101 -31.303 3.035  -0.228 -0.144 -0.437 C18 C0N 31 
C0N C19 C23 C 0 1 N N N N N N -5.536 -29.229 0.223  1.722  -2.930 -1.443 C19 C0N 32 
C0N C23 C24 C 0 1 Y N N N N N -7.055 -25.517 2.199  5.618  -1.643 -0.123 C23 C0N 33 
C0N C25 C25 C 0 1 Y N N N N N -7.221 -28.012 1.806  3.866  -3.359 -0.114 C25 C0N 34 
C0N O2  O2  O 0 1 N N N N N N -7.611 -24.370 2.869  6.726  -1.278 0.250  O2  C0N 35 
C0N O3  O3  O 0 1 N N N N N N -5.815 -29.435 -0.953 1.507  -4.110 -1.635 O3  C0N 36 
C0N S1  S1  S 1 1 N N N N N N -6.780 -23.147 3.253  6.799  -0.424 1.672  S1  C0N 37 
C0N O4  O4  O 0 1 N N N N N N -5.856 -22.592 2.193  7.412  1.118  1.684  O4  C0N 38 
C0N O5  O5  O 0 1 N N N N N N -7.693 -21.965 3.491  6.260  -1.114 3.082  O5  C0N 39 
C0N H2  H1  H 0 1 N N N N N N -0.224 -37.543 3.845  -4.903 -2.772 0.250  H2  C0N 40 
C0N H4  H2  H 0 1 N N N N N N 0.621  -39.452 2.872  -6.863 -3.256 2.226  H4  C0N 41 
C0N H3  H3  H 0 1 N N N N N N 1.554  -38.284 1.875  -7.688 -2.960 0.677  H3  C0N 42 
C0N H5  H4  H 0 1 N N N N N N -1.350 -39.680 -0.903 -6.017 -6.754 0.085  H5  C0N 43 
C0N H7  H5  H 0 1 N N N N N N -2.506 -31.253 5.812  -1.173 2.661  -0.696 H7  C0N 44 
C0N H11 H6  H 0 1 N N N N N N -5.855 -30.709 8.149  1.731  6.123  0.384  H11 C0N 45 
C0N H26 H7  H 0 1 N N N N N N -5.847 -29.096 8.940  2.990  5.155  -0.554 H26 C0N 46 
C0N H14 H9  H 0 1 N N N N N N -3.230 -33.188 0.413  -1.618 -2.390 -0.338 H14 C0N 47 
C0N H15 H10 H 0 1 N N N N N N -2.275 -31.669 0.501  -2.635 -2.087 -1.768 H15 C0N 48 
C0N H18 H11 H 0 1 N N N N N N -3.528 -29.341 2.358  1.878  -0.492 -0.755 H18 C0N 49 
C0N H19 H12 H 0 1 N N N N N N -5.258 -29.500 2.816  0.983  -0.012 -2.219 H19 C0N 50 
C0N H22 H13 H 0 1 N N N N N N -4.558 -26.650 0.043  2.988  -0.539 -2.049 H22 C0N 51 
C0N H23 H14 H 0 1 N N N N N N -5.492 -24.502 1.189  5.180  0.195  -1.316 H23 C0N 52 
C0N H24 H15 H 0 1 N N N N N N -8.562 -26.967 3.052  5.673  -3.607 0.940  H24 C0N 53 
C0N H1  H16 H 0 1 N N N N N N -0.493 -35.758 4.881  -5.496 1.590  1.400  H1  C0N 54 
C0N H6  H17 H 0 1 N N N N N N -0.744 -34.492 6.856  -4.363 3.741  1.125  H6  C0N 55 
C0N H8  H18 H 0 1 N N N N N N -3.590 -31.828 9.851  -0.664 6.654  0.251  H8  C0N 56 
C0N H9  H19 H 0 1 N N N N N N -3.486 -28.971 8.636  1.146  3.729  -1.556 H9  C0N 57 
C0N H27 H20 H 0 1 N N N N N N -4.073 -27.942 6.567  0.637  6.815  -1.798 H27 C0N 58 
C0N H12 H21 H 0 1 N N N N N N -4.081 -29.554 5.776  1.895  5.847  -2.736 H12 C0N 59 
C0N H16 H23 H 0 1 N N N N N N -4.106 -31.076 -0.823 -0.609 -3.516 -2.259 H16 C0N 60 
C0N H17 H24 H 0 1 N N N N N N -5.254 -32.060 0.148  -0.660 -2.010 -3.213 H17 C0N 61 
C0N H20 H25 H 0 1 N N N N N N -5.048 -31.807 3.280  -0.200 -0.666 0.519  H20 C0N 62 
C0N H21 H26 H 0 1 N N N N N N -3.556 -31.075 3.963  -0.153 0.930  -0.268 H21 C0N 63 
C0N H25 H27 H 0 1 N N N N N N -7.700 -28.964 1.979  3.478  -4.319 0.193  H25 C0N 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C0N O3  C19 DOUB N N 1  
C0N C8  C7  TRIP N N 2  
C0N C16 C15 SING N N 3  
C0N C16 N8  SING N N 4  
C0N C19 C20 SING N N 5  
C0N C19 N8  SING N N 6  
C0N C21 C20 DOUB Y N 7  
C0N C21 C22 SING Y N 8  
C0N C15 N7  SING N N 9  
C0N C20 C25 SING Y N 10 
C0N O1  C5  DOUB N N 11 
C0N N8  C17 SING N N 12 
C0N C7  C6  SING N N 13 
C0N C22 C23 DOUB Y N 14 
C0N C25 C24 DOUB Y N 15 
C0N C5  N3  SING N N 16 
C0N C5  C2  SING N N 17 
C0N C6  N3  SING N N 18 
C0N O4  S1  DOUB N N 19 
C0N C23 C24 SING Y N 20 
C0N C23 O2  SING N N 21 
C0N N1  C2  DOUB Y N 22 
C0N N1  C3  SING Y N 23 
C0N N7  C3  SING N N 24 
C0N N7  C18 SING N N 25 
C0N C17 C18 SING N N 26 
C0N C2  C1  SING Y N 27 
C0N O2  S1  SING N N 28 
C0N C3  N2  DOUB Y N 29 
C0N S1  O5  DOUB N N 30 
C0N N2  C4  SING Y N 31 
C0N C1  C4  DOUB Y N 32 
C0N C4  N4  SING N N 33 
C0N N4  C9  SING N N 34 
C0N C14 C12 SING N N 35 
C0N C10 C9  SING Y N 36 
C0N C10 C11 DOUB Y N 37 
C0N C9  N6  DOUB Y N 38 
C0N C11 C12 SING N N 39 
C0N C11 N5  SING Y N 40 
C0N C12 C13 SING N N 41 
C0N N6  N5  SING Y N 42 
C0N N3  H2  SING N N 43 
C0N C6  H4  SING N N 44 
C0N C6  H3  SING N N 45 
C0N C8  H5  SING N N 46 
C0N C10 H7  SING N N 47 
C0N C13 H11 SING N N 48 
C0N C13 H26 SING N N 49 
C0N C15 H14 SING N N 50 
C0N C15 H15 SING N N 51 
C0N C17 H18 SING N N 52 
C0N C17 H19 SING N N 53 
C0N C21 H22 SING N N 54 
C0N C22 H23 SING N N 55 
C0N C24 H24 SING N N 56 
C0N C1  H1  SING N N 57 
C0N N4  H6  SING N N 58 
C0N N5  H8  SING N N 59 
C0N C12 H9  SING N N 60 
C0N C14 H27 SING N N 61 
C0N C14 H12 SING N N 62 
C0N C16 H16 SING N N 63 
C0N C16 H17 SING N N 64 
C0N C18 H20 SING N N 65 
C0N C18 H21 SING N N 66 
C0N C25 H25 SING N N 67 
C0N C13 C14 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C0N InChI            InChI                1.06  "InChI=1S/C25H24N8O5S/c1-2-9-26-23(34)20-15-21(28-22-14-19(30-31-22)16-3-4-16)29-25(27-20)33-12-10-32(11-13-33)24(35)17-5-7-18(8-6-17)38-39(36)37/h1,5-8,14-16H,3-4,9-13H2,(H2-,26,27,28,29,30,31,34)/p+1" 
C0N InChIKey         InChI                1.06  VFSFZYIOAHMZEA-UHFFFAOYSA-O                                                                                                                                                                                
C0N SMILES_CANONICAL CACTVS               3.385 "O=C(NCC#C)c1cc(Nc2cc([nH]n2)C3CC3)nc(n1)N4CCN(CC4)C(=O)c5ccc(O[S+](=O)=O)cc5"                                                                                                                             
C0N SMILES           CACTVS               3.385 "O=C(NCC#C)c1cc(Nc2cc([nH]n2)C3CC3)nc(n1)N4CCN(CC4)C(=O)c5ccc(O[S+](=O)=O)cc5"                                                                                                                             
C0N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C#CCNC(=O)c1cc(nc(n1)N2CCN(CC2)C(=O)c3ccc(cc3)O[S+](=O)=O)Nc4cc([nH]n4)C5CC5"                                                                                                                             
C0N SMILES           "OpenEye OEToolkits" 2.0.7 "C#CCNC(=O)c1cc(nc(n1)N2CCN(CC2)C(=O)c3ccc(cc3)O[S+](=O)=O)Nc4cc([nH]n4)C5CC5"                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           C0N 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[4-[4-[bis(oxidanylidene)-$l^{5}-sulfanyl]oxyphenyl]carbonylpiperazin-1-yl]-6-[(5-cyclopropyl-1~{H}-pyrazol-3-yl)amino]-~{N}-prop-2-ynyl-pyrimidine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C0N "Create component" 2023-05-23 PDBC 
C0N "Initial release"  2024-02-14 RCSB 
# 
