data_A2N
#

_chem_comp.id                                   A2N
_chem_comp.name                                 "[(2R,3S,4R,5R)-4-(acetylamino)-3,5-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H26 N6 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2'-N-Acetyl ADP ribose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-11-16
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       600.368
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    A2N
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3PKJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A2N  N1      N1    N  0  1  Y  N  N  51.189  62.557  45.146  -8.785   3.475  -0.589  N1    A2N   1  
A2N  C2      C2    C  0  1  Y  N  N  50.332  61.536  45.093  -8.381   3.229   0.645  C2    A2N   2  
A2N  N3      N3    N  0  1  Y  N  N  49.897  61.057  43.925  -7.399   2.395   0.914  N3    A2N   3  
A2N  C4      C4    C  0  1  Y  N  N  50.321  61.605  42.768  -6.766   1.756  -0.065  C4    A2N   4  
A2N  C5      C5    C  0  1  Y  N  N  51.211  62.670  42.788  -7.159   1.983  -1.395  C5    A2N   5  
A2N  C6      C6    C  0  1  Y  N  N  51.649  63.144  44.020  -8.212   2.883  -1.631  C6    A2N   6  
A2N  N6      N6    N  0  1  N  N  N  52.488  64.173  44.087  -8.642   3.147  -2.920  N6    A2N   7  
A2N  N7      N7    N  0  1  Y  N  N  51.453  63.015  41.527  -6.363   1.220  -2.182  N7    A2N   8  
A2N  C8      C8    C  0  1  Y  N  N  50.734  62.207  40.742  -5.527   0.555  -1.438  C8    A2N   9  
A2N  N9      N9    N  0  1  Y  N  N  50.037  61.354  41.500  -5.736   0.852  -0.124  N9    A2N  10  
A2N  "C1'"   C1*   C  0  1  N  N  R  49.179  60.243  41.036  -4.996   0.306   1.017  C1*   A2N  11  
A2N  "C2'"   C2*   C  0  1  N  N  R  48.342  60.581  39.822  -5.710  -0.948   1.581  C2*   A2N  12  
A2N  "O2'"   O2*   O  0  1  N  N  N  47.072  61.035  40.271  -6.710  -0.580   2.533  O2*   A2N  13  
A2N  "C3'"   C3*   C  0  1  N  N  S  48.219  59.229  39.111  -4.546  -1.704   2.267  C3*   A2N  14  
A2N  "O3'"   O3*   O  0  1  N  N  N  46.955  58.611  39.394  -4.530  -1.430   3.670  O3*   A2N  15  
A2N  "C4'"   C4*   C  0  1  N  N  R  49.324  58.378  39.734  -3.281  -1.139   1.593  C4*   A2N  16  
A2N  "O4'"   O4*   O  0  1  N  N  N  50.082  59.260  40.558  -3.710  -0.197   0.595  O4*   A2N  17  
A2N  "C5'"   C5*   C  0  1  N  N  N  50.266  57.912  38.638  -2.492  -2.274   0.936  C5*   A2N  18  
A2N  "O5'"   O5*   O  0  1  N  N  N  49.653  56.921  37.850  -1.264  -1.760   0.415  O5*   A2N  19  
A2N  CAA     CAA   C  0  1  N  N  N  56.148  50.387  30.322  10.077   4.186   0.173  CAA   A2N  20  
A2N  OAC     OAC   O  0  1  N  N  N  56.026  52.726  29.814   9.584   2.524   1.775  OAC   A2N  21  
A2N  OAD     OAD   O  0  1  N  N  N  50.080  58.190  35.697  -0.819  -3.233  -1.717  OAD   A2N  22  
A2N  OAE     OAE   O  0  1  N  N  N  53.072  54.528  37.445   3.093  -3.357  -0.378  OAE   A2N  23  
A2N  OAF     OAF   O  0  1  N  N  N  51.983  53.972  30.890   6.755   1.536   2.579  OAF   A2N  24  
A2N  OAI     OAI   O  0  1  N  N  N  55.266  52.658  33.995   7.478   0.995  -2.058  OAI   A2N  25  
A2N  OAJ     OAJ   O  0  1  N  N  N  48.977  55.870  35.644   0.193  -3.819   0.520  OAJ   A2N  26  
A2N  OAK     OAK   O  0  1  N  N  N  50.561  54.233  37.812   2.663  -2.473  -2.703  OAK   A2N  27  
A2N  CAO     CAO   C  0  1  N  N  N  52.528  52.609  35.330   5.017  -0.969  -0.984  CAO   A2N  28  
A2N  NAS     NAS   N  0  1  N  N  N  54.709  51.869  31.497   8.434   2.359  -0.115  NAS   A2N  29  
A2N  OAU     OAU   O  0  1  N  N  N  51.604  53.690  35.519   3.601  -0.920  -0.800  OAU   A2N  30  
A2N  OAV     OAV   O  0  1  N  N  N  51.850  52.824  32.946   5.476   0.594   0.836  OAV   A2N  31  
A2N  OAX     OAX   O  0  1  N  N  N  51.462  56.123  36.266   1.127  -1.803  -0.678  OAX   A2N  32  
A2N  CAY     CAY   C  0  1  N  N  N  55.614  51.795  30.515   9.348   2.964   0.669  CAY   A2N  33  
A2N  CBC     CBC   C  0  1  N  N  R  52.510  52.890  31.647   6.476   1.579   1.179  CBC   A2N  34  
A2N  CBF     CBF   C  0  1  N  N  S  54.059  53.214  33.452   7.156   0.361  -0.818  CBF   A2N  35  
A2N  CBH     CBH   C  0  1  N  N  R  52.863  52.368  33.857   5.629   0.375  -0.584  CBH   A2N  36  
A2N  CBI     CBI   C  0  1  N  N  R  54.013  53.090  31.924   7.726   1.171   0.368  CBI   A2N  37  
A2N  PBL     PBL   P  0  1  N  N  N  50.039  56.847  36.315  -0.183  -2.679  -0.346  PBL   A2N  38  
A2N  PBM     PBM   P  0  1  N  N  N  51.734  54.630  36.808   2.631  -2.164  -1.123  PBM   A2N  39  
A2N  H2      H2    H  0  1  N  N  N  49.984  61.088  46.012  -8.875   3.732   1.463  H2    A2N  40  
A2N  HN6     HN6   H  0  1  N  N  N  52.678  64.387  45.045  -8.215   2.708  -3.673  HN6   A2N  41  
A2N  HN6A    HN6A  H  0  0  N  N  N  53.342  63.937  43.623  -9.370   3.770  -3.070  HN6A  A2N  42  
A2N  H8      H8    H  0  1  N  N  N  50.718  62.238  39.663  -4.778  -0.130  -1.807  H8    A2N  43  
A2N  "H1'"   H1*   H  0  1  N  N  N  48.513  59.960  41.865  -4.876   1.062   1.793  H1*   A2N  44  
A2N  "H2'"   H2*   H  0  1  N  N  N  48.760  61.363  39.171  -6.142  -1.545   0.778  H2*   A2N  45  
A2N  "HO2'"  HO2*  H  0  0  N  N  N  46.530  61.253  39.522  -7.186  -1.330   2.915  HO2*  A2N  46  
A2N  "H3'"   H3*   H  0  1  N  N  N  48.298  59.337  38.019  -4.630  -2.776   2.090  H3*   A2N  47  
A2N  "HO3'"  HO3*  H  0  0  N  N  N  46.902  57.776  38.943  -5.330  -1.712   4.135  HO3*  A2N  48  
A2N  "H4'"   H4*   H  0  1  N  N  N  48.901  57.521  40.278  -2.660  -0.634   2.334  H4*   A2N  49  
A2N  "H5'"   H5*   H  0  1  N  N  N  50.528  58.769  38.000  -2.278  -3.045   1.676  H5*   A2N  50  
A2N  "H5'A"  H5*A  H  0  0  N  N  N  51.175  57.496  39.097  -3.080  -2.702   0.124  H5*A  A2N  51  
A2N  HAA     HAA   H  0  1  N  N  N  56.895  50.385  29.514  10.771   4.532   0.939  HAA   A2N  52  
A2N  HAAA    HAAA  H  0  0  N  N  N  56.617  50.042  31.255  10.631   3.936  -0.732  HAAA  A2N  53  
A2N  HAAB    HAAB  H  0  0  N  N  N  55.319  49.714  30.057   9.357   4.974  -0.048  HAAB  A2N  54  
A2N  HOAD    HOAD  H  0  0  N  N  N  49.448  58.233  34.989  -1.089  -2.539  -2.334  HOAD  A2N  55  
A2N  HOAF    HOAF  H  0  0  N  N  N  52.417  54.009  30.046   5.993   1.736   3.139  HOAF  A2N  56  
A2N  HOAI    HOAI  H  0  0  N  N  N  55.261  52.752  34.940   7.095   0.561  -2.832  HOAI  A2N  57  
A2N  HOAK    HOAK  H  0  0  N  N  N  50.931  53.997  38.655   2.372  -1.733  -3.254  HOAK  A2N  58  
A2N  HAO     HAO   H  0  1  N  N  N  52.078  51.692  35.738   5.437  -1.759  -0.363  HAO   A2N  59  
A2N  HAOA    HAOA  H  0  0  N  N  N  53.459  52.851  35.863   5.240  -1.172  -2.031  HAOA  A2N  60  
A2N  HNAS    HNAS  H  0  0  N  N  N  54.488  51.022  31.981   8.245   2.710  -0.999  HNAS  A2N  61  
A2N  HBC     HBC   H  0  1  N  N  N  52.345  51.972  31.063   6.142   2.575   0.889  HBC   A2N  62  
A2N  HBF     HBF   H  0  1  N  N  N  54.035  54.254  33.809   7.536  -0.661  -0.803  HBF   A2N  63  
A2N  HBH     HBH   H  0  1  N  N  N  53.008  51.280  33.791   5.167   1.186  -1.145  HBH   A2N  64  
A2N  HBI     HBI   H  0  1  N  N  N  54.472  53.948  31.411   8.388   0.552   0.973  HBI   A2N  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A2N  C6     N1      DOUB  Y  N   1  
A2N  C2     N1      SING  Y  N   2  
A2N  N3     C2      DOUB  Y  N   3  
A2N  C2     H2      SING  N  N   4  
A2N  C4     N3      SING  Y  N   5  
A2N  N9     C4      SING  Y  N   6  
A2N  C4     C5      DOUB  Y  N   7  
A2N  N7     C5      SING  Y  N   8  
A2N  C5     C6      SING  Y  N   9  
A2N  C6     N6      SING  N  N  10  
A2N  N6     HN6     SING  N  N  11  
A2N  N6     HN6A    SING  N  N  12  
A2N  C8     N7      DOUB  Y  N  13  
A2N  C8     N9      SING  Y  N  14  
A2N  C8     H8      SING  N  N  15  
A2N  "C1'"  N9      SING  N  N  16  
A2N  "C2'"  "C1'"   SING  N  N  17  
A2N  "O4'"  "C1'"   SING  N  N  18  
A2N  "C1'"  "H1'"   SING  N  N  19  
A2N  "C3'"  "C2'"   SING  N  N  20  
A2N  "C2'"  "O2'"   SING  N  N  21  
A2N  "C2'"  "H2'"   SING  N  N  22  
A2N  "O2'"  "HO2'"  SING  N  N  23  
A2N  "C3'"  "O3'"   SING  N  N  24  
A2N  "C3'"  "C4'"   SING  N  N  25  
A2N  "C3'"  "H3'"   SING  N  N  26  
A2N  "O3'"  "HO3'"  SING  N  N  27  
A2N  "C5'"  "C4'"   SING  N  N  28  
A2N  "C4'"  "O4'"   SING  N  N  29  
A2N  "C4'"  "H4'"   SING  N  N  30  
A2N  "O5'"  "C5'"   SING  N  N  31  
A2N  "C5'"  "H5'"   SING  N  N  32  
A2N  "C5'"  "H5'A"  SING  N  N  33  
A2N  PBL    "O5'"   SING  N  N  34  
A2N  CAA    CAY     SING  N  N  35  
A2N  CAA    HAA     SING  N  N  36  
A2N  CAA    HAAA    SING  N  N  37  
A2N  CAA    HAAB    SING  N  N  38  
A2N  OAC    CAY     DOUB  N  N  39  
A2N  OAD    PBL     SING  N  N  40  
A2N  OAD    HOAD    SING  N  N  41  
A2N  PBM    OAE     DOUB  N  N  42  
A2N  OAF    CBC     SING  N  N  43  
A2N  OAF    HOAF    SING  N  N  44  
A2N  CBF    OAI     SING  N  N  45  
A2N  OAI    HOAI    SING  N  N  46  
A2N  OAJ    PBL     DOUB  N  N  47  
A2N  PBM    OAK     SING  N  N  48  
A2N  OAK    HOAK    SING  N  N  49  
A2N  CBH    CAO     SING  N  N  50  
A2N  CAO    OAU     SING  N  N  51  
A2N  CAO    HAO     SING  N  N  52  
A2N  CAO    HAOA    SING  N  N  53  
A2N  CAY    NAS     SING  N  N  54  
A2N  NAS    CBI     SING  N  N  55  
A2N  NAS    HNAS    SING  N  N  56  
A2N  OAU    PBM     SING  N  N  57  
A2N  CBC    OAV     SING  N  N  58  
A2N  OAV    CBH     SING  N  N  59  
A2N  OAX    PBL     SING  N  N  60  
A2N  OAX    PBM     SING  N  N  61  
A2N  CBC    CBI     SING  N  N  62  
A2N  CBC    HBC     SING  N  N  63  
A2N  CBI    CBF     SING  N  N  64  
A2N  CBF    CBH     SING  N  N  65  
A2N  CBF    HBF     SING  N  N  66  
A2N  CBH    HBH     SING  N  N  67  
A2N  CBI    HBI     SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A2N  SMILES            ACDLabs               12.01  "O=C(NC1C(O)C(OC1O)COP(=O)(O)OP(=O)(OCC4OC(n2c3ncnc(N)c3nc2)C(O)C4O)O)C"  
A2N  SMILES_CANONICAL  CACTVS                3.370  "CC(=O)N[C@H]1[C@H](O)O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@H]1O"  
A2N  SMILES            CACTVS                3.370  "CC(=O)N[CH]1[CH](O)O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH]1O"  
A2N  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CC(=O)N[C@@H]1[C@@H]([C@H](O[C@H]1O)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O"  
A2N  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(=O)NC1C(C(OC1O)COP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O"  
A2N  InChI             InChI                 1.03   "InChI=1S/C17H26N6O14P2/c1-6(24)22-9-11(25)7(36-17(9)28)2-33-38(29,30)37-39(31,32)34-3-8-12(26)13(27)16(35-8)23-5-21-10-14(18)19-4-20-15(10)23/h4-5,7-9,11-13,16-17,25-28H,2-3H2,1H3,(H,22,24)(H,29,30)(H,31,32)(H2,18,19,20)/t7-,8-,9-,11-,12-,13-,16-,17-/m1/s1"  
A2N  InChIKey          InChI                 1.03   YKUBGMLROVEQHG-YUGVQSHHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A2N  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(2R,3S,4R,5R)-4-(acetylamino)-3,5-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
A2N  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "[[(2R,3S,4R,5R)-4-acetamido-3,5-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A2N  "Create component"      2010-11-16  RCSB  
A2N  "Modify aromatic_flag"  2011-06-04  RCSB  
A2N  "Modify descriptor"     2011-06-04  RCSB  
A2N  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     A2N
_pdbx_chem_comp_synonyms.name        "2'-N-Acetyl ADP ribose"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
