data_9PN
# 
_chem_comp.id                                    9PN 
_chem_comp.name                                  
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[4-(3-pyridin-1-ium-1-ylpropyl)-1,2,3-triazol-1-yl]oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H43 N4 O15" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2017-06-20 
_chem_comp.pdbx_modified_date                    2018-04-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        675.659 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9PN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5O9Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9PN C4  C1  C 0 1 N N R -9.071  13.305 21.774 4.632   1.815  1.357  C4  9PN 1  
9PN C5  C2  C 0 1 N N R -9.537  11.868 22.032 3.308   2.300  1.952  C5  9PN 2  
9PN C6  C3  C 0 1 N N N -8.551  11.128 22.941 3.566   3.506  2.857  C6  9PN 3  
9PN C3  C4  C 0 1 N N S -10.146 14.069 21.006 4.359   0.646  0.406  C3  9PN 4  
9PN CBP C5  C 0 1 Y N N -22.786 6.697  17.019 -9.651  -3.542 -0.354 CBP 9PN 5  
9PN CBO C6  C 0 1 Y N N -23.042 6.416  15.681 -10.854 -3.579 -1.033 CBO 9PN 6  
9PN CBT C7  C 0 1 Y N N -22.213 6.939  14.693 -11.825 -2.633 -0.742 CBT 9PN 7  
9PN CBS C8  C 0 1 Y N N -21.124 7.742  15.037 -11.547 -1.679 0.225  CBS 9PN 8  
9PN CBR C9  C 0 1 Y N N -20.854 8.033  16.376 -10.321 -1.704 0.863  CBR 9PN 9  
9PN NBQ N1  N 1 1 Y N N -21.694 7.504  17.390 -9.422  -2.620 0.561  NBQ 9PN 10 
9PN CBN C10 C 0 1 N N N -21.501 7.752  18.848 -8.137  -2.616 1.264  CBN 9PN 11 
9PN CBU C11 C 0 1 N N N -20.150 8.342  19.194 -7.138  -1.748 0.496  CBU 9PN 12 
9PN CBM C12 C 0 1 N N N -20.001 8.053  20.671 -5.795  -1.745 1.230  CBM 9PN 13 
9PN CBL C13 C 0 1 Y N N -18.799 8.878  21.158 -4.812  -0.889 0.474  CBL 9PN 14 
9PN CBH C14 C 0 1 Y N N -17.607 8.444  21.526 -4.101  0.154  0.964  CBH 9PN 15 
9PN NBK N2  N 0 1 Y N N -18.806 10.196 21.289 -4.464  -1.015 -0.812 NBK 9PN 16 
9PN NBJ N3  N 0 1 Y N N -17.721 10.539 21.698 -3.600  -0.107 -1.100 NBJ 9PN 17 
9PN NBI N4  N 0 1 Y N N -16.952 9.558  21.851 -3.353  0.616  -0.064 NBI 9PN 18 
9PN CAG C15 C 0 1 N N R -15.572 9.649  22.362 -2.420  1.744  -0.008 CAG 9PN 19 
9PN CAK C16 C 0 1 N N R -14.839 10.948 21.985 -1.039  1.289  -0.486 CAK 9PN 20 
9PN OBA O1  O 0 1 N N N -14.460 10.898 20.597 -0.540  0.278  0.391  OBA 9PN 21 
9PN OAY O2  O 0 1 N N N -15.802 9.602  23.777 -2.892  2.796  -0.853 OAY 9PN 22 
9PN CAI C17 C 0 1 N N R -14.589 9.645  24.548 -2.065  3.961  -0.851 CAI 9PN 23 
9PN CAJ C18 C 0 1 N N N -14.886 9.368  26.031 -2.680  5.025  -1.763 CAJ 9PN 24 
9PN OBB O3  O 0 1 N N N -16.186 9.843  26.356 -3.932  5.450  -1.222 OBB 9PN 25 
9PN CAH C19 C 0 1 N N R -13.942 11.000 24.336 -0.669  3.595  -1.363 CAH 9PN 26 
9PN OAZ O4  O 0 1 N N N -12.740 11.127 25.117 0.176   4.746  -1.308 OAZ 9PN 27 
9PN CAL C20 C 0 1 N N S -13.593 11.132 22.859 -0.085  2.488  -0.481 CAL 9PN 28 
9PN O1  O5  O 0 1 N N N -13.072 12.451 22.666 1.187   2.088  -0.995 O1  9PN 29 
9PN C1  C21 C 0 1 N N S -11.836 12.511 21.948 2.093   1.611  0.002  C1  9PN 30 
9PN C2  C22 C 0 1 N N R -11.483 13.973 21.735 3.369   1.099  -0.671 C2  9PN 31 
9PN O2  O6  O 0 1 N N N -12.526 14.602 20.970 3.050   -0.004 -1.522 O2  9PN 32 
9PN O5  O7  O 0 1 N N N -10.801 11.884 22.713 2.422   2.677  0.896  O5  9PN 33 
9PN O6  O8  O 0 1 N N N -8.457  11.799 24.200 2.349   3.886  3.502  O6  9PN 34 
9PN O4  O9  O 0 1 N N N -7.854  13.288 21.011 5.499   1.384  2.409  O4  9PN 35 
9PN O3  O10 O 0 1 N N N -9.753  15.447 20.924 5.581   0.234  -0.210 O3  9PN 36 
9PN CAM C23 C 0 1 N N S -9.987  16.061 19.647 5.621   -1.152 -0.553 CAM 9PN 37 
9PN OBD O11 O 0 1 N N N -9.210  15.391 18.648 5.576   -1.940 0.638  OBD 9PN 38 
9PN CAO C24 C 0 1 N N R -9.469  15.901 17.331 5.585   -3.350 0.406  CAO 9PN 39 
9PN CAP C25 C 0 1 N N N -8.722  15.009 16.331 5.505   -4.088 1.744  CAP 9PN 40 
9PN OBG O12 O 0 1 N N N -7.370  14.819 16.759 4.247   -3.815 2.365  OBG 9PN 41 
9PN CAN C26 C 0 1 N N S -9.007  17.355 17.258 6.878   -3.739 -0.315 CAN 9PN 42 
9PN OBE O13 O 0 1 N N N -9.356  17.904 15.977 6.863   -5.139 -0.600 OBE 9PN 43 
9PN CAR C27 C 0 1 N N S -9.700  18.177 18.352 6.979   -2.951 -1.625 CAR 9PN 44 
9PN OBC O14 O 0 1 N N N -9.119  19.480 18.410 8.218   -3.253 -2.270 OBC 9PN 45 
9PN CAQ C28 C 0 1 N N R -9.547  17.516 19.720 6.915   -1.453 -1.314 CAQ 9PN 46 
9PN OBF O15 O 0 1 N N N -10.331 18.236 20.682 6.936   -0.710 -2.534 OBF 9PN 47 
9PN H1  H1  H 0 1 N N N -8.904  13.802 22.741 5.104   2.629  0.807  H1  9PN 48 
9PN H2  H2  H 0 1 N N N -9.619  11.335 21.074 2.856   1.497  2.536  H2  9PN 49 
9PN H3  H3  H 0 1 N N N -8.904  10.098 23.101 4.310   3.244  3.609  H3  9PN 50 
9PN H4  H4  H 0 1 N N N -7.560  11.106 22.464 3.934   4.338  2.257  H4  9PN 51 
9PN H5  H5  H 0 1 N N N -10.249 13.637 20.000 3.933   -0.187 0.966  H5  9PN 52 
9PN H6  H6  H 0 1 N N N -23.433 6.291  17.783 -8.892  -4.278 -0.571 H6  9PN 53 
9PN H7  H7  H 0 1 N N N -23.882 5.794  15.410 -11.036 -4.337 -1.781 H7  9PN 54 
9PN H8  H8  H 0 1 N N N -22.413 6.722  13.654 -12.774 -2.638 -1.258 H8  9PN 55 
9PN H9  H9  H 0 1 N N N -20.486 8.141  14.262 -12.280 -0.926 0.477  H9  9PN 56 
9PN H10 H10 H 0 1 N N N -20.012 8.656  16.638 -10.097 -0.964 1.618  H10 9PN 57 
9PN H11 H11 H 0 1 N N N -22.281 8.449  19.187 -8.272  -2.213 2.267  H11 9PN 58 
9PN H12 H12 H 0 1 N N N -21.608 6.795  19.380 -7.756  -3.636 1.330  H12 9PN 59 
9PN H13 H13 H 0 1 N N N -19.350 7.856  18.616 -7.002  -2.151 -0.507 H13 9PN 60 
9PN H14 H14 H 0 1 N N N -20.134 9.425  19.003 -7.518  -0.729 0.430  H14 9PN 61 
9PN H15 H15 H 0 1 N N N -20.911 8.353  21.211 -5.931  -1.342 2.234  H15 9PN 62 
9PN H16 H16 H 0 1 N N N -19.816 6.981  20.832 -5.415  -2.764 1.296  H16 9PN 63 
9PN H17 H17 H 0 1 N N N -17.248 7.426  21.556 -4.126  0.539  1.972  H17 9PN 64 
9PN H18 H18 H 0 1 N N N -14.981 8.783  22.029 -2.349  2.106  1.018  H18 9PN 65 
9PN H19 H19 H 0 1 N N N -15.518 11.796 22.157 -1.117  0.890  -1.497 H19 9PN 66 
9PN H20 H20 H 0 1 N N N -14.007 11.700 20.363 -1.098  -0.510 0.441  H20 9PN 67 
9PN H21 H21 H 0 1 N N N -13.898 8.870  24.187 -1.989  4.352  0.163  H21 9PN 68 
9PN H22 H22 H 0 1 N N N -14.835 8.285  26.218 -2.006  5.878  -1.832 H22 9PN 69 
9PN H23 H23 H 0 1 N N N -14.142 9.884  26.656 -2.838  4.604  -2.757 H23 9PN 70 
9PN H24 H24 H 0 1 N N N -16.367 9.671  27.273 -4.380  6.125  -1.750 H24 9PN 71 
9PN H25 H25 H 0 1 N N N -14.658 11.789 24.608 -0.740  3.243  -2.392 H25 9PN 72 
9PN H26 H26 H 0 1 N N N -12.951 11.046 26.040 -0.136  5.489  -1.841 H26 9PN 73 
9PN H27 H27 H 0 1 N N N -12.844 10.373 22.590 0.032   2.856  0.538  H27 9PN 74 
9PN H28 H28 H 0 1 N N N -11.938 12.019 20.969 1.626   0.800  0.560  H28 9PN 75 
9PN H29 H29 H 0 1 N N N -11.388 14.463 22.715 3.815   1.899  -1.262 H29 9PN 76 
9PN H30 H30 H 0 1 N N N -13.349 14.532 21.439 2.427   0.211  -2.229 H30 9PN 77 
9PN H31 H31 H 0 1 N N N -7.845  11.337 24.761 2.438   4.647  4.093  H31 9PN 78 
9PN H32 H32 H 0 1 N N N -7.186  12.812 21.490 5.711   2.075  3.052  H32 9PN 79 
9PN H33 H33 H 0 1 N N N -11.056 16.020 19.393 4.765   -1.396 -1.182 H33 9PN 80 
9PN H34 H34 H 0 1 N N N -10.546 15.857 17.111 4.728   -3.622 -0.210 H34 9PN 81 
9PN H35 H35 H 0 1 N N N -8.727  15.489 15.341 5.602   -5.160 1.574  H35 9PN 82 
9PN H36 H36 H 0 1 N N N -9.225  14.033 16.268 6.312   -3.749 2.394  H36 9PN 83 
9PN H37 H37 H 0 1 N N N -6.915  14.266 16.135 4.128   -4.251 3.220  H37 9PN 84 
9PN H38 H38 H 0 1 N N N -7.918  17.397 17.411 7.733   -3.504 0.318  H38 9PN 85 
9PN H39 H39 H 0 1 N N N -9.069  18.808 15.931 7.654   -5.456 -1.058 H39 9PN 86 
9PN H40 H40 H 0 1 N N N -10.771 18.251 18.112 6.151   -3.224 -2.280 H40 9PN 87 
9PN H41 H41 H 0 1 N N N -9.548  19.989 19.088 8.349   -2.788 -3.108 H41 9PN 88 
9PN H42 H42 H 0 1 N N N -8.485  17.547 20.007 7.771   -1.172 -0.700 H42 9PN 89 
9PN H43 H43 H 0 1 N N N -10.239 17.828 21.535 6.893   0.249  -2.412 H43 9PN 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9PN CBT CBS DOUB Y N 1  
9PN CBT CBO SING Y N 2  
9PN CBS CBR SING Y N 3  
9PN CBO CBP DOUB Y N 4  
9PN OBE CAN SING N N 5  
9PN CAP OBG SING N N 6  
9PN CAP CAO SING N N 7  
9PN CBR NBQ DOUB Y N 8  
9PN CBP NBQ SING Y N 9  
9PN CAN CAO SING N N 10 
9PN CAN CAR SING N N 11 
9PN CAO OBD SING N N 12 
9PN NBQ CBN SING N N 13 
9PN CAR OBC SING N N 14 
9PN CAR CAQ SING N N 15 
9PN OBD CAM SING N N 16 
9PN CBN CBU SING N N 17 
9PN CBU CBM SING N N 18 
9PN CAM CAQ SING N N 19 
9PN CAM O3  SING N N 20 
9PN CAQ OBF SING N N 21 
9PN OBA CAK SING N N 22 
9PN CBM CBL SING N N 23 
9PN O3  C3  SING N N 24 
9PN O2  C2  SING N N 25 
9PN C3  C2  SING N N 26 
9PN C3  C4  SING N N 27 
9PN O4  C4  SING N N 28 
9PN CBL NBK SING Y N 29 
9PN CBL CBH DOUB Y N 30 
9PN NBK NBJ DOUB Y N 31 
9PN CBH NBI SING Y N 32 
9PN NBJ NBI SING Y N 33 
9PN C2  C1  SING N N 34 
9PN C4  C5  SING N N 35 
9PN NBI CAG SING N N 36 
9PN C1  O1  SING N N 37 
9PN C1  O5  SING N N 38 
9PN CAK CAG SING N N 39 
9PN CAK CAL SING N N 40 
9PN C5  O5  SING N N 41 
9PN C5  C6  SING N N 42 
9PN CAG OAY SING N N 43 
9PN O1  CAL SING N N 44 
9PN CAL CAH SING N N 45 
9PN C6  O6  SING N N 46 
9PN OAY CAI SING N N 47 
9PN CAH CAI SING N N 48 
9PN CAH OAZ SING N N 49 
9PN CAI CAJ SING N N 50 
9PN CAJ OBB SING N N 51 
9PN C4  H1  SING N N 52 
9PN C5  H2  SING N N 53 
9PN C6  H3  SING N N 54 
9PN C6  H4  SING N N 55 
9PN C3  H5  SING N N 56 
9PN CBP H6  SING N N 57 
9PN CBO H7  SING N N 58 
9PN CBT H8  SING N N 59 
9PN CBS H9  SING N N 60 
9PN CBR H10 SING N N 61 
9PN CBN H11 SING N N 62 
9PN CBN H12 SING N N 63 
9PN CBU H13 SING N N 64 
9PN CBU H14 SING N N 65 
9PN CBM H15 SING N N 66 
9PN CBM H16 SING N N 67 
9PN CBH H17 SING N N 68 
9PN CAG H18 SING N N 69 
9PN CAK H19 SING N N 70 
9PN OBA H20 SING N N 71 
9PN CAI H21 SING N N 72 
9PN CAJ H22 SING N N 73 
9PN CAJ H23 SING N N 74 
9PN OBB H24 SING N N 75 
9PN CAH H25 SING N N 76 
9PN OAZ H26 SING N N 77 
9PN CAL H27 SING N N 78 
9PN C1  H28 SING N N 79 
9PN C2  H29 SING N N 80 
9PN O2  H30 SING N N 81 
9PN O6  H31 SING N N 82 
9PN O4  H32 SING N N 83 
9PN CAM H33 SING N N 84 
9PN CAO H34 SING N N 85 
9PN CAP H35 SING N N 86 
9PN CAP H36 SING N N 87 
9PN OBG H37 SING N N 88 
9PN CAN H38 SING N N 89 
9PN OBE H39 SING N N 90 
9PN CAR H40 SING N N 91 
9PN OBC H41 SING N N 92 
9PN CAQ H42 SING N N 93 
9PN OBF H43 SING N N 94 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9PN InChI            InChI                1.03  
;InChI=1S/C28H43N4O15/c33-10-14-17(36)20(39)21(40)27(44-14)47-25-19(38)16(12-35)45-28(23(25)42)46-24-18(37)15(11-34)43-26(22(24)41)32-9-13(29-30-32)5-4-8-31-6-2-1-3-7-31/h1-3,6-7,9,14-28,33-42H,4-5,8,10-12H2/q+1/t14-,15-,16-,17-,18-,19-,20+,21-,22-,23-,24+,25+,26-,27+,28+/m1/s1
;
9PN InChIKey         InChI                1.03  KBNJHYMTJQZFJJ-ZJLPYKFYSA-N 
9PN SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@H](O)[C@@H](CO)O[C@H]([C@@H]3O)n4cc(CCC[n+]5ccccc5)nn4)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" 
9PN SMILES           CACTVS               3.385 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](CO)O[CH](O[CH]3[CH](O)[CH](CO)O[CH]([CH]3O)n4cc(CCC[n+]5ccccc5)nn4)[CH]2O)[CH](O)[CH](O)[CH]1O" 
9PN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc[n+](cc1)CCCc2cn(nn2)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)O)O" 
9PN SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc[n+](cc1)CCCc2cn(nn2)C3C(C(C(C(O3)CO)O)OC4C(C(C(C(O4)CO)O)OC5C(C(C(C(O5)CO)O)O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9PN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[4-(3-pyridin-1-ium-1-ylpropyl)-1,2,3-triazol-1-yl]oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9PN "Create component" 2017-06-20 RCSB 
9PN "Initial release"  2018-05-02 RCSB 
# 
