data_8AN
# 
_chem_comp.id                                    8AN 
_chem_comp.name                                  
;3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H15 N6 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-03-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        346.236 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     8AN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3CMA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8AN O3P    O3P    O 0 1 N Y N N N N 77.833 113.927 95.663  -5.876 0.054  -0.167 O3P    8AN 1  
8AN P      P      P 0 1 N N N N N N 78.315 115.051 96.681  -4.860 -0.958 0.203  P      8AN 2  
8AN O1P    O1P    O 0 1 N N N N N N 79.701 114.694 96.908  -5.342 -1.744 1.522  O1P    8AN 3  
8AN O2P    O2P    O 0 1 N N N N N N 77.958 116.408 96.227  -4.677 -2.003 -1.008 O2P    8AN 4  
8AN "O5'"  "O5'"  O 0 1 N N N N N N 77.449 114.724 97.954  -3.457 -0.226 0.497  "O5'"  8AN 5  
8AN "C5'"  "C5'"  C 0 1 N N N N N N 76.312 115.481 98.268  -2.818 0.640  -0.444 "C5'"  8AN 6  
8AN "C4'"  "C4'"  C 0 1 N N S N N N 75.115 115.231 97.483  -1.509 1.163  0.151  "C4'"  8AN 7  
8AN "O4'"  "O4'"  O 0 1 N N N N N N 75.027 113.918 96.997  -0.540 0.097  0.249  "O4'"  8AN 8  
8AN "C1'"  "C1'"  C 0 1 N N R N N N 73.748 113.409 97.241  0.743  0.756  0.331  "C1'"  8AN 9  
8AN N9     N9     N 0 1 Y N N N N N 73.890 112.203 98.088  1.815  -0.166 -0.053 N9     8AN 10 
8AN C4     C4     C 0 1 Y N N N N N 73.287 110.968 97.934  3.132  -0.079 0.320  C4     8AN 11 
8AN N3     N3     N 0 1 Y N N N N N 72.448 110.590 96.955  3.843  0.759  1.068  N3     8AN 12 
8AN C2     C2     C 0 1 Y N N N N N 72.043 109.345 97.143  5.134  0.571  1.245  C2     8AN 13 
8AN N1     N1     N 0 1 Y N N N N N 72.356 108.488 98.125  5.784  -0.441 0.699  N1     8AN 14 
8AN C6     C6     C 0 1 Y N N N N N 73.213 108.892 99.093  5.157  -1.330 -0.065 C6     8AN 15 
8AN N6     N6     N 0 1 N N N N N N 73.528 108.046 100.071 5.848  -2.387 -0.632 N6     8AN 16 
8AN C5     C5     C 0 1 Y N N N N N 73.719 110.192 99.007  3.778  -1.172 -0.282 C5     8AN 17 
8AN N7     N7     N 0 1 Y N N N N N 74.603 110.904 99.805  2.839  -1.857 -0.979 N7     8AN 18 
8AN C8     C8     C 0 1 Y N N N N N 74.673 112.082 99.220  1.685  -1.271 -0.841 C8     8AN 19 
8AN "C2'"  "C2'"  C 0 1 N N R N N N 72.834 114.542 97.696  0.652  1.924  -0.675 "C2'"  8AN 20 
8AN "O2'"  "O2'"  O 0 1 N N N N N N 71.960 114.809 96.630  1.330  3.075  -0.169 "O2'"  8AN 21 
8AN "C3'"  "C3'"  C 0 1 N N S N N N 73.827 115.588 98.183  -0.864 2.198  -0.797 "C3'"  8AN 22 
8AN "N3'"  "N3'"  N 0 1 N N N N N N 73.593 116.888 97.639  -1.176 3.564  -0.356 "N3'"  8AN 23 
8AN HO1P   HO1P   H 0 0 N N N N N N 80.149 114.616 96.074  -6.183 -2.210 1.418  HO1P   8AN 24 
8AN HO2P   HO2P   H 0 0 N N N N N N 77.881 116.984 96.979  -4.025 -2.695 -0.835 HO2P   8AN 25 
8AN "H5'"  "H5'"  H 0 1 N N N N N N 76.060 115.265 99.317  -2.606 0.088  -1.360 "H5'"  8AN 26 
8AN "H5'A" "H5'A" H 0 0 N N N N N N 76.589 116.523 98.051  -3.476 1.479  -0.670 "H5'A" 8AN 27 
8AN "H4'"  "H4'"  H 0 1 N N N N N N 75.235 115.915 96.630  -1.689 1.606  1.131  "H4'"  8AN 28 
8AN "H1'"  "H1'"  H 0 1 N N N N N N 73.221 113.035 96.351  0.910  1.135  1.339  "H1'"  8AN 29 
8AN H2     H2     H 0 1 N N N N N N 71.361 108.964 96.397  5.681  1.270  1.859  H2     8AN 30 
8AN HN6    HN6    H 0 1 N N N N N N 73.607 107.121 99.700  6.800  -2.485 -0.475 HN6    8AN 31 
8AN HN6A   HN6A   H 0 0 N N N N N N 74.400 108.317 100.478 5.379  -3.029 -1.188 HN6A   8AN 32 
8AN H8     H8     H 0 1 N N N N N N 75.290 112.886 99.594  0.762  -1.609 -1.287 H8     8AN 33 
8AN "H2'"  "H2'"  H 0 1 N N N N N N 72.127 114.391 98.525  1.065  1.630  -1.640 "H2'"  8AN 34 
8AN "HO2'" "HO2'" H 0 0 N N N N N N 71.070 114.869 96.957  2.275  2.939  -0.016 "HO2'" 8AN 35 
8AN "H3'"  "H3'"  H 0 1 N N N N N N 73.792 115.601 99.282  -1.200 2.040  -1.821 "H3'"  8AN 36 
8AN "HN3'" "HN3'" H 0 0 N N N N N N 73.538 117.556 98.381  -0.758 4.247  -0.970 "HN3'" 8AN 37 
8AN HN3A   HN3A   H 0 0 N N N N N N 74.344 117.133 97.026  -2.174 3.703  -0.288 HN3A   8AN 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8AN O3P   P      DOUB N N 1  
8AN O2P   P      SING N N 2  
8AN P     O1P    SING N N 3  
8AN P     "O5'"  SING N N 4  
8AN O1P   HO1P   SING N N 5  
8AN O2P   HO2P   SING N N 6  
8AN "O5'" "C5'"  SING N N 7  
8AN "C4'" "C5'"  SING N N 8  
8AN "C5'" "H5'"  SING N N 9  
8AN "C5'" "H5'A" SING N N 10 
8AN "O4'" "C4'"  SING N N 11 
8AN "C4'" "C3'"  SING N N 12 
8AN "C4'" "H4'"  SING N N 13 
8AN "O4'" "C1'"  SING N N 14 
8AN "C1'" "C2'"  SING N N 15 
8AN "C1'" N9     SING N N 16 
8AN "C1'" "H1'"  SING N N 17 
8AN C4    N9     SING Y N 18 
8AN N9    C8     SING Y N 19 
8AN N3    C4     DOUB Y N 20 
8AN C4    C5     SING Y N 21 
8AN N3    C2     SING Y N 22 
8AN C2    N1     DOUB Y N 23 
8AN C2    H2     SING N N 24 
8AN N1    C6     SING Y N 25 
8AN C5    C6     DOUB Y N 26 
8AN C6    N6     SING N N 27 
8AN N6    HN6    SING N N 28 
8AN N6    HN6A   SING N N 29 
8AN C5    N7     SING Y N 30 
8AN C8    N7     DOUB Y N 31 
8AN C8    H8     SING N N 32 
8AN "O2'" "C2'"  SING N N 33 
8AN "C2'" "C3'"  SING N N 34 
8AN "C2'" "H2'"  SING N N 35 
8AN "O2'" "HO2'" SING N N 36 
8AN "N3'" "C3'"  SING N N 37 
8AN "C3'" "H3'"  SING N N 38 
8AN "N3'" "HN3'" SING N N 39 
8AN "N3'" HN3A   SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8AN SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3N"                                                                                                                     
8AN SMILES_CANONICAL CACTVS               3.341 "N[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23"                                                                                                
8AN SMILES           CACTVS               3.341 "N[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23"                                                                                                       
8AN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)N)O)N"                                                                                             
8AN SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)N)O)N"                                                                                                               
8AN InChI            InChI                1.03  "InChI=1S/C10H15N6O6P/c11-5-4(1-21-23(18,19)20)22-10(7(5)17)16-3-15-6-8(12)13-2-14-9(6)16/h2-5,7,10,17H,1,11H2,(H2,12,13,14)(H2,18,19,20)/t4-,5-,7-,10-/m1/s1" 
8AN InChIKey         InChI                1.03  WIVGZDLLXCRANL-QYYRPYCUSA-N                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8AN "SYSTEMATIC NAME" ACDLabs              10.04 
;3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate)
;
8AN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,4R,5R)-3-amino-5-(6-aminopurin-9-yl)-4-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8AN "Create component"     2008-03-27 RCSB 
8AN "Modify aromatic_flag" 2011-06-04 RCSB 
8AN "Modify descriptor"    2011-06-04 RCSB 
8AN "Modify PCM"           2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 8AN CYS None "Covalent chemical modification" "Amino-acid backbone" C-terminal "N3'" C ? ? 
2 8AN ILE None "Covalent chemical modification" "Amino-acid backbone" C-terminal "N3'" C ? ? 
# 
