data_83N
# 
_chem_comp.id                                    83N 
_chem_comp.name                                  "tert-butyl-N-[(2S)-1-[(2S,4S)-4-methoxy-2-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H40 N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "tert-butyl-N-[(2S)-1-[(2S,4S)-4-methoxy-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-09-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        484.586 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     83N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PT9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
83N C1  C1  C 0 1 N N N N N N 25.775 3.788  -31.364 1.248  5.737  1.936  C1  83N 1  
83N C10 C2  C 0 1 N N N N N N 17.699 7.784  -25.540 -4.127 -4.302 -0.008 C10 83N 2  
83N C11 C3  C 0 1 N N N N N N 16.990 5.585  -25.808 -5.485 -2.783 1.107  C11 83N 3  
83N C12 C4  C 0 1 N N N N N N 21.347 3.169  -24.781 -4.738 1.209  -1.806 C12 83N 4  
83N C13 C5  C 0 1 N N N N N N 22.861 6.010  -30.858 1.095  2.697  0.862  C13 83N 5  
83N C14 C6  C 0 1 N N N N N N 20.486 6.177  -30.044 0.868  0.394  -0.105 C14 83N 6  
83N C15 C7  C 0 1 N N S N N N 20.312 7.498  -30.791 2.329  0.359  -0.474 C15 83N 7  
83N C16 C8  C 0 1 N N N N N N 20.130 7.433  -33.223 4.184  -1.138 0.030  C16 83N 8  
83N C17 C9  C 0 1 N N N N N N 19.491 7.350  -35.604 6.107  -2.465 0.521  C17 83N 9  
83N C18 C10 C 0 1 N N N N N N 20.176 8.660  -35.920 6.471  -1.624 1.746  C18 83N 10 
83N C19 C11 C 0 1 N N N N N N 18.152 7.256  -36.299 6.872  -1.948 -0.698 C19 83N 11 
83N C2  C12 C 0 1 N N S N N N 23.646 4.705  -30.905 0.079  3.703  1.442  C2  83N 12 
83N C20 C13 C 0 1 N N N N N N 20.377 6.172  -35.938 6.481  -3.926 0.776  C20 83N 13 
83N C21 C14 C 0 1 N N N N N N 19.609 8.524  -29.885 2.487  0.687  -1.960 C21 83N 14 
83N C22 C15 C 0 1 N N N N N N 20.437 8.856  -28.655 2.006  2.115  -2.221 C22 83N 15 
83N C23 C16 C 0 1 N N N N N N 19.267 9.796  -30.649 3.961  0.565  -2.354 C23 83N 16 
83N C3  C17 C 0 1 N N N N N N 23.483 4.182  -29.489 -1.264 3.239  0.818  C3  83N 17 
83N C4  C18 C 0 1 N N S N N N 22.006 4.474  -29.185 -1.080 1.701  0.792  C4  83N 18 
83N C5  C19 C 0 1 N N N N N N 21.797 4.837  -27.721 -1.955 1.087  -0.269 C5  83N 19 
83N C6  C20 C 0 1 N N S N N N 20.704 4.287  -25.597 -4.061 0.100  -0.998 C6  83N 20 
83N C7  C21 C 0 1 N N N N N N 19.194 4.374  -25.348 -5.129 -0.772 -0.335 C7  83N 21 
83N C8  C22 C 0 1 N N S N N N 18.494 5.576  -25.989 -4.458 -1.956 0.364  C8  83N 22 
83N C9  C23 C 0 1 N N N N N N 18.926 6.922  -25.423 -3.864 -2.934 -0.676 C9  83N 23 
83N N1  N1  N 0 1 N N N N N N 20.974 4.059  -27.017 -3.210 0.698  0.034  N1  83N 24 
83N N2  N2  N 0 1 N N N N N N 16.608 6.809  -25.522 -5.279 -4.091 0.876  N2  83N 25 
83N N3  N3  N 0 1 N N N N N N 21.700 5.622  -30.033 0.343  1.497  0.465  N3  83N 26 
83N N4  N4  N 0 1 N N N N N N 19.575 7.235  -32.012 2.867  -0.978 -0.208 N4  83N 27 
83N O1  O1  O 0 1 N N N N N N 25.002 4.975  -31.241 0.395  5.034  1.030  O1  83N 28 
83N O2  O2  O 0 1 N N N N N N 22.375 5.808  -27.229 -1.531 0.941  -1.396 O2  83N 29 
83N O3  O3  O 0 1 N N N N N N 16.244 4.617  -25.992 -6.365 -2.332 1.808  O3  83N 30 
83N O4  O4  O 0 1 N N N N N N 21.257 3.419  -23.398 -5.627 1.941  -0.960 O4  83N 31 
83N O5  O5  O 0 1 N N N N N N 19.539 5.637  -29.467 0.165  -0.570 -0.320 O5  83N 32 
83N O6  O6  O 0 1 N N N N N N 21.292 7.706  -33.413 4.925  -0.175 0.023  O6  83N 33 
83N O7  O7  O 0 1 N N N N N N 19.190 7.303  -34.156 4.679  -2.366 0.274  O7  83N 34 
83N H1  H1  H 0 1 N N N N N N 26.811 4.050  -31.624 1.440  6.738  1.551  H1  83N 35 
83N H2  H2  H 0 1 N N N N N N 25.763 3.242  -30.409 0.763  5.808  2.909  H2  83N 36 
83N H3  H3  H 0 1 N N N N N N 25.348 3.153  -32.154 2.191  5.199  2.037  H3  83N 37 
83N H16 H4  H 0 1 N N N N N N 17.704 8.354  -26.481 -4.363 -5.051 -0.764 H16 83N 38 
83N H15 H5  H 0 1 N N N N N N 17.622 8.479  -24.691 -3.258 -4.611 0.572  H15 83N 39 
83N H21 H8  H 0 1 N N N N N N 23.443 6.813  -30.381 1.590  3.129  -0.007 H21 83N 40 
83N H22 H9  H 0 1 N N N N N N 22.551 6.329  -31.864 1.835  2.436  1.619  H22 83N 41 
83N H23 H10 H 0 1 N N N N N N 21.309 7.888  -31.043 2.872  1.094  0.120  H23 83N 42 
83N H25 H11 H 0 1 N N N N N N 21.146 8.701  -35.402 5.925  -1.992 2.615  H25 83N 43 
83N H26 H12 H 0 1 N N N N N N 20.336 8.737  -37.006 7.542  -1.697 1.932  H26 83N 44 
83N H27 H13 H 0 1 N N N N N N 19.544 9.495  -35.582 6.204  -0.582 1.564  H27 83N 45 
83N H30 H14 H 0 1 N N N N N N 17.538 8.128  -36.032 6.606  -0.906 -0.880 H30 83N 46 
83N H28 H15 H 0 1 N N N N N N 18.305 7.235  -37.388 7.944  -2.021 -0.512 H28 83N 47 
83N H29 H16 H 0 1 N N N N N N 17.639 6.336  -35.983 6.613  -2.547 -1.571 H29 83N 48 
83N H4  H17 H 0 1 N N N N N N 23.182 4.011  -31.621 0.044  3.633  2.529  H4  83N 49 
83N H31 H18 H 0 1 N N N N N N 21.339 6.276  -35.415 6.221  -4.525 -0.097 H31 83N 50 
83N H32 H19 H 0 1 N N N N N N 19.885 5.241  -35.619 7.552  -4.000 0.962  H32 83N 51 
83N H33 H20 H 0 1 N N N N N N 20.551 6.141  -37.024 5.935  -4.294 1.645  H33 83N 52 
83N H34 H21 H 0 1 N N N N N N 18.665 8.074  -29.544 1.894  -0.011 -2.551 H34 83N 53 
83N H35 H22 H 0 1 N N N N N N 19.899 9.590  -28.037 2.563  2.807  -1.591 H35 83N 54 
83N H36 H23 H 0 1 N N N N N N 20.608 7.940  -28.070 2.167  2.367  -3.269 H36 83N 55 
83N H37 H24 H 0 1 N N N N N N 21.404 9.278  -28.967 0.943  2.188  -1.990 H37 83N 56 
83N H39 H25 H 0 1 N N N N N N 18.767 10.506 -29.974 4.304  -0.453 -2.168 H39 83N 57 
83N H40 H26 H 0 1 N N N N N N 20.191 10.249 -31.039 4.074  0.798  -3.413 H40 83N 58 
83N H38 H27 H 0 1 N N N N N N 18.597 9.552  -31.486 4.554  1.263  -1.763 H38 83N 59 
83N H6  H28 H 0 1 N N N N N N 23.692 3.103  -29.439 -2.106 3.521  1.451  H6  83N 60 
83N H5  H29 H 0 1 N N N N N N 24.144 4.716  -28.791 -1.384 3.636  -0.190 H5  83N 61 
83N H7  H30 H 0 1 N N N N N N 21.387 3.606  -29.454 -1.311 1.275  1.768  H7  83N 62 
83N H9  H31 H 0 1 N N N N N N 21.158 5.242  -25.293 -3.451 -0.513 -1.662 H9  83N 63 
83N H11 H32 H 0 1 N N N N N N 19.031 4.425  -24.261 -5.678 -0.181 0.397  H11 83N 64 
83N H10 H33 H 0 1 N N N N N N 18.731 3.459  -25.745 -5.818 -1.142 -1.094 H10 83N 65 
83N H12 H34 H 0 1 N N N N N N 18.714 5.567  -27.067 -3.683 -1.608 1.047  H12 83N 66 
83N H14 H35 H 0 1 N N N N N N 19.234 6.822  -24.372 -2.795 -2.762 -0.806 H14 83N 67 
83N H13 H36 H 0 1 N N N N N N 19.756 7.343  -26.009 -4.389 -2.857 -1.628 H13 83N 68 
83N H8  H37 H 0 1 N N N N N N 20.525 3.292  -27.476 -3.549 0.814  0.935  H8  83N 69 
83N H17 H38 H 0 1 N N N N N N 15.661 7.052  -25.312 -5.823 -4.805 1.246  H17 83N 70 
83N H24 H39 H 0 1 N N N N N N 18.635 6.900  -31.953 2.276  -1.747 -0.203 H24 83N 71 
83N H18 H40 H 0 1 N N N N N N 20.835 2.222  -25.007 -3.979 1.883  -2.205 H18 83N 72 
83N H19 H41 H 0 1 N Y N N N N 22.408 3.088  -25.061 -5.300 0.768  -2.629 H19 83N 73 
83N H20 H42 H 0 1 N N N N N N 21.665 2.707  -22.920 -6.091 2.661  -1.407 H20 83N 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
83N C19 C17 SING N N 1  
83N C20 C17 SING N N 2  
83N C18 C17 SING N N 3  
83N C17 O7  SING N N 4  
83N O7  C16 SING N N 5  
83N O6  C16 DOUB N N 6  
83N C16 N4  SING N N 7  
83N N4  C15 SING N N 8  
83N C1  O1  SING N N 9  
83N O1  C2  SING N N 10 
83N C2  C13 SING N N 11 
83N C2  C3  SING N N 12 
83N C13 N3  SING N N 13 
83N C15 C14 SING N N 14 
83N C15 C21 SING N N 15 
83N C23 C21 SING N N 16 
83N C14 N3  SING N N 17 
83N C14 O5  DOUB N N 18 
83N N3  C4  SING N N 19 
83N C21 C22 SING N N 20 
83N C3  C4  SING N N 21 
83N C4  C5  SING N N 22 
83N C5  O2  DOUB N N 23 
83N C5  N1  SING N N 24 
83N N1  C6  SING N N 25 
83N O3  C11 DOUB N N 26 
83N C8  C11 SING N N 27 
83N C8  C9  SING N N 28 
83N C8  C7  SING N N 29 
83N C11 N2  SING N N 30 
83N C6  C7  SING N N 31 
83N C6  C12 SING N N 32 
83N C10 N2  SING N N 33 
83N C10 C9  SING N N 34 
83N C12 O4  SING N N 35 
83N C1  H1  SING N N 36 
83N C1  H2  SING N N 37 
83N C1  H3  SING N N 38 
83N C10 H16 SING N N 39 
83N C10 H15 SING N N 40 
83N C13 H21 SING N N 41 
83N C13 H22 SING N N 42 
83N C15 H23 SING N N 43 
83N C18 H25 SING N N 44 
83N C18 H26 SING N N 45 
83N C18 H27 SING N N 46 
83N C19 H30 SING N N 47 
83N C19 H28 SING N N 48 
83N C19 H29 SING N N 49 
83N C2  H4  SING N N 50 
83N C20 H31 SING N N 51 
83N C20 H32 SING N N 52 
83N C20 H33 SING N N 53 
83N C21 H34 SING N N 54 
83N C22 H35 SING N N 55 
83N C22 H36 SING N N 56 
83N C22 H37 SING N N 57 
83N C23 H39 SING N N 58 
83N C23 H40 SING N N 59 
83N C23 H38 SING N N 60 
83N C3  H6  SING N N 61 
83N C3  H5  SING N N 62 
83N C4  H7  SING N N 63 
83N C6  H9  SING N N 64 
83N C7  H11 SING N N 65 
83N C7  H10 SING N N 66 
83N C8  H12 SING N N 67 
83N C9  H14 SING N N 68 
83N C9  H13 SING N N 69 
83N N1  H8  SING N N 70 
83N N2  H17 SING N N 71 
83N N4  H24 SING N N 72 
83N C12 H18 SING N N 73 
83N C12 H19 SING N N 74 
83N O4  H20 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
83N InChI            InChI                1.06  "InChI=1S/C23H40N4O7/c1-13(2)18(26-22(32)34-23(3,4)5)21(31)27-11-16(33-6)10-17(27)20(30)25-15(12-28)9-14-7-8-24-19(14)29/h13-18,28H,7-12H2,1-6H3,(H,24,29)(H,25,30)(H,26,32)/t14-,15-,16-,17-,18-/m0/s1" 
83N InChIKey         InChI                1.06  AUPBHARHTRTBTF-ATIWLJMLSA-N                                                                                                                                                                              
83N SMILES_CANONICAL CACTVS               3.385 "CO[C@H]1C[C@H](N(C1)C(=O)[C@@H](NC(=O)OC(C)(C)C)C(C)C)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O"                                                                                                                   
83N SMILES           CACTVS               3.385 "CO[CH]1C[CH](N(C1)C(=O)[CH](NC(=O)OC(C)(C)C)C(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O"                                                                                                                          
83N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N1C[C@H](C[C@H]1C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)OC)NC(=O)OC(C)(C)C"                                                                                                                    
83N SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)N1CC(CC1C(=O)NC(CC2CCNC2=O)CO)OC)NC(=O)OC(C)(C)C"                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           83N 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{tert}-butyl ~{N}-[(2~{S})-1-[(2~{S},4~{S})-4-methoxy-2-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      83N 
_pdbx_chem_comp_synonyms.name         "tert-butyl-N-[(2S)-1-[(2S,4S)-4-methoxy-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         precursor 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
83N "Create component"     2021-10-04 PDBE 
83N "Modify formula"       2021-10-04 PDBE 
83N "Modify aromatic_flag" 2021-10-04 PDBE 
83N "Modify descriptor"    2022-08-22 RCSB 
83N "Initial release"      2023-05-03 RCSB 
83N "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            83N 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
