data_6VN
# 
_chem_comp.id                                    6VN 
_chem_comp.name                                  "2-[(4-propan-2-ylphenyl)amino]-1-[(1~{S},5~{S})-3,3,5-trimethylcyclohexyl]benzimidazole-5-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H33 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-07 
_chem_comp.pdbx_modified_date                    2017-02-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        419.559 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6VN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LGE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6VN C1  C1  C 0 1 Y N N -28.057 -102.446 25.243 -2.149 0.532  -0.045 C1  6VN 1  
6VN C2  C2  C 0 1 Y N N -28.928 -102.803 27.464 -2.034 2.947  0.060  C2  6VN 2  
6VN C3  C3  C 0 1 Y N N -26.768 -102.667 25.727 -3.536 0.597  -0.094 C3  6VN 3  
6VN C4  C4  C 0 1 Y N N -27.636 -103.026 27.944 -3.425 2.993  0.009  C4  6VN 4  
6VN C8  C5  C 0 1 Y N N -31.684 -98.149  21.487 4.840  1.320  -0.088 C8  6VN 5  
6VN C9  C6  C 0 1 Y N N -32.059 -99.354  20.891 4.743  0.100  0.555  C9  6VN 6  
6VN C10 C7  C 0 1 Y N N -30.973 -98.185  22.687 3.727  1.879  -0.690 C10 6VN 7  
6VN C11 C8  C 0 1 Y N N -31.732 -100.566 21.482 3.533  -0.565 0.598  C11 6VN 8  
6VN C12 C9  C 0 1 Y N N -30.637 -99.404  23.279 2.515  1.219  -0.651 C12 6VN 9  
6VN C13 C10 C 0 1 Y N N -31.017 -100.597 22.675 2.414  -0.007 -0.006 C13 6VN 10 
6VN C14 C11 C 0 1 N N N -32.050 -96.803  20.827 6.160  2.046  -0.128 C14 6VN 11 
6VN C15 C12 C 0 1 N N N -26.706 -103.020 22.615 -1.015 -2.638 1.135  C15 6VN 12 
6VN C16 C13 C 0 1 N N N -26.150 -103.033 21.201 -1.348 -4.130 1.069  C16 6VN 13 
6VN C17 C14 C 0 1 N N S -27.830 -101.979 22.769 -1.561 -1.938 -0.112 C17 6VN 14 
6VN C18 C15 C 0 1 N N N -25.678 -101.601 20.841 -0.709 -4.741 -0.180 C18 6VN 15 
6VN C19 C16 C 0 1 N N N -27.223 -100.579 22.587 -0.921 -2.549 -1.361 C19 6VN 16 
6VN C20 C17 C 0 1 N N S -26.721 -100.498 21.129 -1.255 -4.041 -1.427 C20 6VN 17 
6VN C21 C18 C 0 1 N N N -26.151 -99.118  20.785 -0.615 -4.651 -2.675 C21 6VN 18 
6VN C24 C19 C 0 1 N N N -33.330 -96.256  21.457 6.626  2.336  1.301  C24 6VN 19 
6VN C25 C20 C 0 1 N N N -30.900 -95.786  20.917 7.200  1.176  -0.836 C25 6VN 20 
6VN C23 C21 C 0 1 N N N -24.952 -103.975 21.178 -0.803 -4.830 2.315  C23 6VN 21 
6VN C22 C22 C 0 1 N N N -27.227 -103.557 20.245 -2.866 -4.311 1.005  C22 6VN 22 
6VN N1  N1  N 0 1 Y N N -28.565 -102.151 24.047 -1.242 -0.510 -0.049 N1  6VN 23 
6VN C5  C23 C 0 1 Y N N -26.551 -102.970 27.065 -4.167 1.808  -0.067 C5  6VN 24 
6VN C7  C24 C 0 1 N N N -27.430 -103.336 29.436 -4.120 4.295  0.036  C7  6VN 25 
6VN O1  O1  O 0 1 N N N -28.433 -103.289 30.185 -5.465 4.342  -0.013 O1  6VN 26 
6VN O   O2  O 0 1 N N N -26.273 -103.606 29.834 -3.478 5.324  0.103  O   6VN 27 
6VN C   C25 C 0 1 Y N N -29.139 -102.515 26.119 -1.388 1.713  0.033  C   6VN 28 
6VN N   N2  N 0 1 Y N N -30.246 -102.265 25.428 -0.079 1.344  0.066  N   6VN 29 
6VN C6  C26 C 0 1 Y N N -29.882 -102.029 24.174 0.008  0.038  0.018  C6  6VN 30 
6VN N2  N3  N 0 1 N N N -30.737 -101.783 23.181 1.188  -0.678 0.036  N2  6VN 31 
6VN H1  H1  H 0 1 N N N -29.768 -102.854 28.140 -1.461 3.860  0.119  H1  6VN 32 
6VN H2  H2  H 0 1 N N N -25.927 -102.602 25.052 -4.116 -0.312 -0.154 H2  6VN 33 
6VN H3  H3  H 0 1 N N N -32.609 -99.343  19.961 5.614  -0.333 1.025  H3  6VN 34 
6VN H4  H4  H 0 1 N N N -30.680 -97.261  23.163 3.807  2.832  -1.192 H4  6VN 35 
6VN H5  H5  H 0 1 N N N -32.034 -101.491 21.013 3.458  -1.518 1.100  H5  6VN 36 
6VN H6  H6  H 0 1 N N N -30.082 -99.420  24.206 1.646  1.655  -1.122 H6  6VN 37 
6VN H7  H7  H 0 1 N N N -32.250 -96.994  19.762 6.042  2.985  -0.669 H7  6VN 38 
6VN H8  H8  H 0 1 N N N -27.107 -104.017 22.851 -1.470 -2.203 2.024  H8  6VN 39 
6VN H9  H9  H 0 1 N N N -25.894 -102.776 23.316 0.066  -2.509 1.180  H9  6VN 40 
6VN H10 H10 H 0 1 N N N -28.540 -102.139 21.944 -2.642 -2.067 -0.157 H10 6VN 41 
6VN H11 H11 H 0 1 N N N -25.438 -101.577 19.768 0.372  -4.612 -0.135 H11 6VN 42 
6VN H12 H12 H 0 1 N N N -24.772 -101.380 21.424 -0.947 -5.804 -0.227 H12 6VN 43 
6VN H13 H13 H 0 1 N N N -26.385 -100.436 23.285 -1.310 -2.050 -2.248 H13 6VN 44 
6VN H14 H14 H 0 1 N N N -27.987 -99.808  22.768 0.160  -2.420 -1.315 H14 6VN 45 
6VN H15 H15 H 0 1 N N N -27.584 -100.677 20.470 -2.336 -4.170 -1.472 H15 6VN 46 
6VN H16 H16 H 0 1 N N N -26.906 -98.346  20.996 -0.853 -5.714 -2.722 H16 6VN 47 
6VN H17 H17 H 0 1 N N N -25.254 -98.930  21.394 -1.004 -4.153 -3.563 H17 6VN 48 
6VN H18 H18 H 0 1 N N N -25.883 -99.087  19.718 0.466  -4.522 -2.630 H18 6VN 49 
6VN H19 H19 H 0 1 N N N -34.130 -97.007  21.375 5.885  2.956  1.806  H19 6VN 50 
6VN H20 H20 H 0 1 N N N -33.148 -96.028  22.518 6.743  1.397  1.842  H20 6VN 51 
6VN H21 H21 H 0 1 N N N -33.634 -95.339  20.932 7.580  2.861  1.272  H21 6VN 52 
6VN H22 H22 H 0 1 N N N -29.997 -96.211  20.455 7.318  0.237  -0.296 H22 6VN 53 
6VN H23 H23 H 0 1 N N N -31.183 -94.865  20.387 6.868  0.970  -1.854 H23 6VN 54 
6VN H24 H24 H 0 1 N N N -30.697 -95.554  21.973 8.155  1.701  -0.865 H24 6VN 55 
6VN H25 H25 H 0 1 N N N -24.177 -103.601 21.864 -1.258 -4.395 3.204  H25 6VN 56 
6VN H26 H26 H 0 1 N N N -25.269 -104.979 21.496 -1.040 -5.893 2.268  H26 6VN 57 
6VN H27 H27 H 0 1 N N N -24.545 -104.025 20.157 0.278  -4.701 2.360  H27 6VN 58 
6VN H28 H28 H 0 1 N N N -27.523 -104.573 20.547 -3.255 -3.813 0.117  H28 6VN 59 
6VN H29 H29 H 0 1 N N N -28.104 -102.894 20.281 -3.104 -5.374 0.958  H29 6VN 60 
6VN H30 H30 H 0 1 N N N -26.827 -103.581 19.220 -3.322 -3.876 1.895  H30 6VN 61 
6VN H31 H31 H 0 1 N N N -25.550 -103.161 27.424 -5.246 1.851  -0.106 H31 6VN 62 
6VN H32 H32 H 0 1 N N N -28.172 -103.487 31.077 -5.875 5.218  0.008  H32 6VN 63 
6VN H33 H33 H 0 1 N N N -31.209 -102.569 22.783 1.166  -1.647 0.077  H33 6VN 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6VN C22 C16 SING N N 1  
6VN C21 C20 SING N N 2  
6VN C14 C25 SING N N 3  
6VN C14 C24 SING N N 4  
6VN C14 C8  SING N N 5  
6VN C18 C20 SING N N 6  
6VN C18 C16 SING N N 7  
6VN C9  C11 DOUB Y N 8  
6VN C9  C8  SING Y N 9  
6VN C20 C19 SING N N 10 
6VN C23 C16 SING N N 11 
6VN C16 C15 SING N N 12 
6VN C11 C13 SING Y N 13 
6VN C8  C10 DOUB Y N 14 
6VN C19 C17 SING N N 15 
6VN C15 C17 SING N N 16 
6VN C13 N2  SING N N 17 
6VN C13 C12 DOUB Y N 18 
6VN C10 C12 SING Y N 19 
6VN C17 N1  SING N N 20 
6VN N2  C6  SING N N 21 
6VN N1  C6  SING Y N 22 
6VN N1  C1  SING Y N 23 
6VN C6  N   DOUB Y N 24 
6VN C1  C3  DOUB Y N 25 
6VN C1  C   SING Y N 26 
6VN N   C   SING Y N 27 
6VN C3  C5  SING Y N 28 
6VN C   C2  DOUB Y N 29 
6VN C5  C4  DOUB Y N 30 
6VN C2  C4  SING Y N 31 
6VN C4  C7  SING N N 32 
6VN C7  O   DOUB N N 33 
6VN C7  O1  SING N N 34 
6VN C2  H1  SING N N 35 
6VN C3  H2  SING N N 36 
6VN C9  H3  SING N N 37 
6VN C10 H4  SING N N 38 
6VN C11 H5  SING N N 39 
6VN C12 H6  SING N N 40 
6VN C14 H7  SING N N 41 
6VN C15 H8  SING N N 42 
6VN C15 H9  SING N N 43 
6VN C17 H10 SING N N 44 
6VN C18 H11 SING N N 45 
6VN C18 H12 SING N N 46 
6VN C19 H13 SING N N 47 
6VN C19 H14 SING N N 48 
6VN C20 H15 SING N N 49 
6VN C21 H16 SING N N 50 
6VN C21 H17 SING N N 51 
6VN C21 H18 SING N N 52 
6VN C24 H19 SING N N 53 
6VN C24 H20 SING N N 54 
6VN C24 H21 SING N N 55 
6VN C25 H22 SING N N 56 
6VN C25 H23 SING N N 57 
6VN C25 H24 SING N N 58 
6VN C23 H25 SING N N 59 
6VN C23 H26 SING N N 60 
6VN C23 H27 SING N N 61 
6VN C22 H28 SING N N 62 
6VN C22 H29 SING N N 63 
6VN C22 H30 SING N N 64 
6VN C5  H31 SING N N 65 
6VN O1  H32 SING N N 66 
6VN N2  H33 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6VN InChI            InChI                1.03  "InChI=1S/C26H33N3O2/c1-16(2)18-6-9-20(10-7-18)27-25-28-22-13-19(24(30)31)8-11-23(22)29(25)21-12-17(3)14-26(4,5)15-21/h6-11,13,16-17,21H,12,14-15H2,1-5H3,(H,27,28)(H,30,31)/t17-,21+/m1/s1" 
6VN InChIKey         InChI                1.03  GWMNDWCQEWDFPA-UTKZUKDTSA-N                                                                                                                                                                  
6VN SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1C[C@@H](CC(C)(C)C1)n2c(Nc3ccc(cc3)C(C)C)nc4cc(ccc24)C(O)=O"                                                                                                                         
6VN SMILES           CACTVS               3.385 "C[CH]1C[CH](CC(C)(C)C1)n2c(Nc3ccc(cc3)C(C)C)nc4cc(ccc24)C(O)=O"                                                                                                                             
6VN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C[C@@H]1C[C@@H](CC(C1)(C)C)n2c3ccc(cc3nc2Nc4ccc(cc4)C(C)C)C(=O)O"                                                                                                                           
6VN SMILES           "OpenEye OEToolkits" 2.0.5 "CC1CC(CC(C1)(C)C)n2c3ccc(cc3nc2Nc4ccc(cc4)C(C)C)C(=O)O"                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6VN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "2-[(4-propan-2-ylphenyl)amino]-1-[(1~{S},5~{S})-3,3,5-trimethylcyclohexyl]benzimidazole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6VN "Create component" 2016-07-07 EBI  
6VN "Initial release"  2017-02-08 RCSB 
# 
