data_5ZN
#

_chem_comp.id                                   5ZN
_chem_comp.name                                 "2-chloro-4-[4-(2,6-dioxo-1,2,5,6-tetrahydropyrimidine-4-carbonyl)piperazin-1-yl]benzaldehyde"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H15 Cl N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-29
_chem_comp.pdbx_modified_date                   2021-11-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       362.768
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5ZN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RMT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5ZN  C8    C1   C   0  1  N  N  N  107.054  -1.061  110.297   0.731   2.199   0.172  C8    5ZN   1  
5ZN  C9    C2   C   0  1  N  N  N  108.463  -1.510  110.674  -0.634   2.722  -0.288  C9    5ZN   2  
5ZN  C1    C3   C   0  1  N  N  N  110.461  -3.740  108.304  -3.693   0.475   0.142  C1    5ZN   3  
5ZN  C10   C4   C   0  1  Y  N  N  104.764  -1.968  110.420   2.460   0.716  -0.431  C10   5ZN   4  
5ZN  C11   C5   C   0  1  Y  N  N  104.274  -1.085  111.419   3.488   1.656  -0.452  C11   5ZN   5  
5ZN  C12   C6   C   0  1  Y  N  N  102.922  -0.872  111.572   4.769   1.281  -0.169  C12   5ZN   6  
5ZN  C13   C7   C   0  1  Y  N  N  102.457  -2.375  109.782   4.022  -1.002   0.166  C13   5ZN   7  
5ZN  C14   C8   C   0  1  Y  N  N  103.806  -2.615  109.597   2.733  -0.614  -0.120  C14   5ZN   8  
5ZN  C16   C9   C   0  1  N  N  N  111.636  -5.855  108.490  -4.246  -1.583  -0.763  C16   5ZN   9  
5ZN  C19   C10  C   0  1  N  N  N  110.663  -5.130  106.326  -5.829  -0.812   0.786  C19   5ZN  10  
5ZN  C2    C11  C   0  1  N  N  N  110.051  -2.553  109.138  -2.769   1.635   0.233  C2    5ZN  11  
5ZN  C21   C12  C   0  1  N  N  N  110.199  -3.923  106.987  -4.962   0.421   0.970  C21   5ZN  12  
5ZN  C22   C13  C   0  1  Y  N  N  101.957  -1.503  110.766   5.056  -0.054   0.144  C22   5ZN  13  
5ZN  C23   C14  C   0  1  N  N  N  100.540  -1.231  110.985   6.432  -0.459   0.449  C23   5ZN  14  
5ZN  C5    C15  C   0  1  N  N  N  107.976  -3.767  109.885  -1.149   0.398  -1.130  C5    5ZN  15  
5ZN  C6    C16  C   0  1  N  N  N  106.589  -3.326  109.440   0.236  -0.034  -0.637  C6    5ZN  16  
5ZN  N15   N1   N   0  1  N  N  N  111.155  -4.681  109.023  -3.440  -0.522  -0.653  N15   5ZN  17  
5ZN  N18   N2   N   0  1  N  N  N  111.359  -6.018  107.147  -5.388  -1.748  -0.084  N18   5ZN  18  
5ZN  N4    N3   N   0  1  N  N  N  108.904  -2.633  109.841  -1.566   1.587  -0.370  N4    5ZN  19  
5ZN  N7    N4   N   0  1  N  N  N  106.116  -2.193  110.256   1.158   1.108  -0.715  N7    5ZN  20  
5ZN  O17   O1   O   0  1  N  N  N  112.254  -6.675  109.158  -3.918  -2.462  -1.536  O17   5ZN  21  
5ZN  O20   O2   O   0  1  N  N  N  110.484  -5.400  105.135  -6.865  -0.955   1.400  O20   5ZN  22  
5ZN  O24   O3   O   0  1  N  N  N  100.110  -0.542  111.913   7.325   0.363   0.429  O24   5ZN  23  
5ZN  O3    O4   O   0  1  N  N  N  110.805  -1.567  109.137  -3.099   2.627   0.852  O3    5ZN  24  
5ZN  CL25  CL1  CL  0  0  N  N  N  101.335  -3.222  108.711   4.367  -2.658   0.555  CL25  5ZN  25  
5ZN  H1    H1   H   0  1  N  N  N  107.084  -0.587  109.305   1.462   3.006   0.133  H1    5ZN  26  
5ZN  H2    H2   H   0  1  N  N  N  106.701  -0.332  111.041   0.653   1.828   1.194  H2    5ZN  27  
5ZN  H3    H3   H   0  1  N  N  N  108.470  -1.822  111.729  -1.007   3.451   0.431  H3    5ZN  28  
5ZN  H4    H4   H   0  1  N  N  N  109.157  -0.667  110.536  -0.535   3.191  -1.267  H4    5ZN  29  
5ZN  H5    H5   H   0  1  N  N  N  104.971  -0.574  112.067   3.270   2.686  -0.694  H5    5ZN  30  
5ZN  H6    H6   H   0  1  N  N  N  102.589  -0.193  112.343   5.563   2.014  -0.187  H6    5ZN  31  
5ZN  H7    H7   H   0  1  N  N  N  104.131  -3.296  108.825   1.934  -1.340  -0.104  H7    5ZN  32  
5ZN  H8    H8   H   0  1  N  N  N  110.646  -3.073  106.451  -4.685   0.487   2.022  H8    5ZN  33  
5ZN  H9    H9   H   0  1  N  N  N  109.105  -3.895  106.872  -5.563   1.297   0.727  H9    5ZN  34  
5ZN  H10   H10  H   0  1  N  N  N   99.827  -1.658  110.295   6.652  -1.488   0.691  H10   5ZN  35  
5ZN  H11   H11  H   0  1  N  N  N  107.922  -4.153  110.914  -1.100   0.640  -2.191  H11   5ZN  36  
5ZN  H12   H12  H   0  1  N  N  N  108.338  -4.560  109.214  -1.862  -0.410  -0.971  H12   5ZN  37  
5ZN  H13   H13  H   0  1  N  N  N  106.629  -3.019  108.384   0.165  -0.374   0.396  H13   5ZN  38  
5ZN  H14   H14  H   0  1  N  N  N  105.890  -4.168  109.551   0.609  -0.845  -1.262  H14   5ZN  39  
5ZN  H15   H15  H   0  1  N  N  N  111.691  -6.859  106.719  -5.915  -2.549  -0.228  H15   5ZN  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5ZN  O20   C19  DOUB  N  N   1  
5ZN  C19   C21  SING  N  N   2  
5ZN  C19   N18  SING  N  N   3  
5ZN  C21   C1   SING  N  N   4  
5ZN  N18   C16  SING  N  N   5  
5ZN  C1    N15  DOUB  N  N   6  
5ZN  C1    C2   SING  N  N   7  
5ZN  C16   N15  SING  N  N   8  
5ZN  C16   O17  DOUB  N  N   9  
5ZN  CL25  C13  SING  N  N  10  
5ZN  O3    C2   DOUB  N  N  11  
5ZN  C2    N4   SING  N  N  12  
5ZN  C6    C5   SING  N  N  13  
5ZN  C6    N7   SING  N  N  14  
5ZN  C14   C13  DOUB  Y  N  15  
5ZN  C14   C10  SING  Y  N  16  
5ZN  C13   C22  SING  Y  N  17  
5ZN  N4    C5   SING  N  N  18  
5ZN  N4    C9   SING  N  N  19  
5ZN  N7    C8   SING  N  N  20  
5ZN  N7    C10  SING  N  N  21  
5ZN  C8    C9   SING  N  N  22  
5ZN  C10   C11  DOUB  Y  N  23  
5ZN  C22   C23  SING  N  N  24  
5ZN  C22   C12  DOUB  Y  N  25  
5ZN  C23   O24  DOUB  N  N  26  
5ZN  C11   C12  SING  Y  N  27  
5ZN  C8    H1   SING  N  N  28  
5ZN  C8    H2   SING  N  N  29  
5ZN  C9    H3   SING  N  N  30  
5ZN  C9    H4   SING  N  N  31  
5ZN  C11   H5   SING  N  N  32  
5ZN  C12   H6   SING  N  N  33  
5ZN  C14   H7   SING  N  N  34  
5ZN  C21   H8   SING  N  N  35  
5ZN  C21   H9   SING  N  N  36  
5ZN  C23   H10  SING  N  N  37  
5ZN  C5    H11  SING  N  N  38  
5ZN  C5    H12  SING  N  N  39  
5ZN  C6    H13  SING  N  N  40  
5ZN  C6    H14  SING  N  N  41  
5ZN  N18   H15  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5ZN  SMILES            ACDLabs               12.01  "O=C(C=1CC(=O)NC(=O)N=1)N1CCN(CC1)c1ccc(C=O)c(Cl)c1"  
5ZN  InChI             InChI                 1.03   "InChI=1S/C16H15ClN4O4/c17-12-7-11(2-1-10(12)9-22)20-3-5-21(6-4-20)15(24)13-8-14(23)19-16(25)18-13/h1-2,7,9H,3-6,8H2,(H,19,23,25)"  
5ZN  InChIKey          InChI                 1.03   KUILKXDVCXJXPR-UHFFFAOYSA-N  
5ZN  SMILES_CANONICAL  CACTVS                3.385  "Clc1cc(ccc1C=O)N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3"  
5ZN  SMILES            CACTVS                3.385  "Clc1cc(ccc1C=O)N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3"  
5ZN  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3)Cl)C=O"  
5ZN  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3)Cl)C=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5ZN  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-chloro-4-[4-(2,6-dioxo-1,2,5,6-tetrahydropyrimidine-4-carbonyl)piperazin-1-yl]benzaldehyde"  
5ZN  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-[4-[[2,6-bis(oxidanylidene)-5~{H}-pyrimidin-4-yl]carbonyl]piperazin-1-yl]-2-chloranyl-benzaldehyde"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5ZN  "Create component"  2021-07-29  RCSB  
5ZN  "Initial release"   2021-11-10  RCSB  
##
