data_5VN
# 
_chem_comp.id                                    5VN 
_chem_comp.name                                  Caulophyllogenin 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H48 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-12-09 
_chem_comp.pdbx_modified_date                    2016-06-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        488.699 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5VN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5F9B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5VN C21 C1  C 0 1 N N N 38.688 -9.672  40.073 0.723  0.895  -1.591 C21 5VN 1  
5VN C20 C2  C 0 1 N N S 37.673 -10.058 41.098 0.879  -0.247 -0.570 C20 5VN 2  
5VN C34 C3  C 0 1 N N N 37.910 -11.518 41.327 1.638  -1.370 -1.252 C34 5VN 3  
5VN C31 C4  C 0 1 N N R 39.243 -11.804 42.118 3.139  -1.116 -1.355 C31 5VN 4  
5VN O33 O1  O 0 1 N N N 40.467 -11.386 41.474 3.415  -0.133 -2.345 O33 5VN 5  
5VN C27 C5  C 0 1 N N R 38.997 -11.168 43.426 3.753  -0.764 -0.011 C27 5VN 6  
5VN C28 C6  C 0 1 N N N 37.721 -11.911 43.785 3.502  -1.918 0.947  C28 5VN 7  
5VN O30 O2  O 0 1 N N N 36.637 -11.281 43.875 3.980  -3.140 0.664  O30 5VN 8  
5VN O29 O3  O 0 1 N N N 37.842 -13.148 43.807 2.873  -1.736 1.962  O29 5VN 9  
5VN C35 C7  C 0 1 N N N 40.084 -11.447 44.478 5.264  -0.606 -0.118 C35 5VN 10 
5VN C36 C8  C 0 1 N N N 41.339 -10.598 44.273 5.679  0.670  -0.829 C36 5VN 11 
5VN C37 C9  C 0 1 N N N 40.972 -9.122  44.322 5.032  1.906  -0.211 C37 5VN 12 
5VN C38 C10 C 0 1 N N N 40.342 -8.782  45.657 5.582  2.151  1.195  C38 5VN 13 
5VN C39 C11 C 0 1 N N N 42.194 -8.228  44.210 5.366  3.126  -1.087 C39 5VN 14 
5VN C40 C12 C 0 1 N N N 40.036 -8.836  43.173 3.513  1.744  -0.161 C40 5VN 15 
5VN C25 C13 C 0 1 N N S 38.744 -9.653  43.320 3.117  0.483  0.583  C25 5VN 16 
5VN C22 C14 C 0 1 N N N 37.854 -9.299  42.294 1.608  0.322  0.609  C22 5VN 17 
5VN C23 C15 C 0 1 N N N 37.213 -8.080  42.523 1.013  0.711  1.706  C23 5VN 18 
5VN C24 C16 C 0 1 N N N 36.307 -7.535  41.631 -0.459 0.569  1.969  C24 5VN 19 
5VN C14 C17 C 0 1 N N R 36.586 -8.143  40.259 -1.204 0.397  0.645  C14 5VN 20 
5VN C16 C18 C 0 1 N N R 36.372 -9.702  40.349 -0.543 -0.697 -0.178 C16 5VN 21 
5VN C17 C19 C 0 1 N N N 35.099 -10.210 41.079 -0.395 -1.976 0.662  C17 5VN 22 
5VN C18 C20 C 0 1 N N N 36.423 -10.312 38.907 -1.342 -1.031 -1.436 C18 5VN 23 
5VN C19 C21 C 0 1 N N N 35.585 -9.537  37.876 -2.808 -1.319 -1.074 C19 5VN 24 
5VN C1  C22 C 0 1 N N R 36.124 -8.104  37.820 -3.376 -0.041 -0.461 C1  5VN 25 
5VN C3  C23 C 0 1 N N R 35.845 -7.395  39.175 -2.706 0.220  0.882  C3  5VN 26 
5VN C4  C24 C 0 1 N N N 34.402 -7.283  39.623 -2.983 -0.880 1.899  C4  5VN 27 
5VN C5  C25 C 0 1 N N N 36.381 -6.006  39.067 -3.252 1.541  1.451  C5  5VN 28 
5VN C6  C26 C 0 1 N N N 35.651 -5.272  37.952 -4.764 1.427  1.633  C6  5VN 29 
5VN C7  C27 C 0 1 N N S 36.092 -5.870  36.657 -5.438 1.214  0.285  C7  5VN 30 
5VN O9  O4  O 0 1 N N N 35.536 -5.139  35.561 -6.848 1.036  0.485  O9  5VN 31 
5VN C10 C28 C 0 1 N N R 35.626 -7.307  36.576 -4.887 -0.000 -0.460 C10 5VN 32 
5VN C11 C29 C 0 1 N N N 34.113 -7.333  36.419 -5.516 -1.279 0.090  C11 5VN 33 
5VN C12 C30 C 0 1 N N N 36.238 -7.898  35.321 -5.366 0.138  -1.926 C12 5VN 34 
5VN O13 O5  O 0 1 N N N 35.709 -7.244  34.165 -6.794 0.157  -1.961 O13 5VN 35 
5VN H1  H1  H 0 1 N N N 39.697 -9.869  40.463 0.192  0.528  -2.469 H1  5VN 36 
5VN H2  H2  H 0 1 N N N 38.527 -10.261 39.158 0.158  1.711  -1.140 H2  5VN 37 
5VN H3  H3  H 0 1 N N N 38.587 -8.601  39.842 1.709  1.256  -1.886 H3  5VN 38 
5VN H4  H4  H 0 1 N N N 37.066 -11.925 41.903 1.481  -2.339 -0.783 H4  5VN 39 
5VN H5  H5  H 0 1 N N N 37.965 -12.022 40.351 1.247  -1.468 -2.284 H5  5VN 40 
5VN H6  H6  H 0 1 N N N 39.290 -12.892 42.275 3.602  -2.059 -1.698 H6  5VN 41 
5VN H7  H7  H 0 1 N N N 41.207 -11.602 42.029 3.116  -0.373 -3.232 H7  5VN 42 
5VN H8  H8  H 0 1 N N N 35.919 -11.897 43.963 3.795  -3.843 1.303  H8  5VN 43 
5VN H9  H9  H 0 1 N N N 39.672 -11.230 45.475 5.694  -0.629 0.888  H9  5VN 44 
5VN H10 H10 H 0 1 N N N 40.365 -12.509 44.420 5.670  -1.469 -0.666 H10 5VN 45 
5VN H11 H11 H 0 1 N N N 41.783 -10.832 43.294 6.772  0.776  -0.754 H11 5VN 46 
5VN H12 H12 H 0 1 N N N 42.065 -10.821 45.068 5.439  0.616  -1.888 H12 5VN 47 
5VN H13 H13 H 0 1 N N N 41.054 -9.004  46.466 6.659  2.304  1.142  H13 5VN 48 
5VN H14 H14 H 0 1 N N N 40.084 -7.713  45.679 5.109  3.036  1.621  H14 5VN 49 
5VN H15 H15 H 0 1 N N N 39.431 -9.382  45.796 5.368  1.286  1.824  H15 5VN 50 
5VN H16 H16 H 0 1 N N N 42.878 -8.434  45.046 4.978  2.968  -2.093 H16 5VN 51 
5VN H17 H17 H 0 1 N N N 42.708 -8.428  43.258 4.909  4.018  -0.657 H17 5VN 52 
5VN H18 H18 H 0 1 N N N 41.881 -7.174  44.244 6.447  3.257  -1.130 H18 5VN 53 
5VN H19 H19 H 0 1 N N N 40.530 -9.105  42.228 3.088  2.619  0.350  H19 5VN 54 
5VN H20 H20 H 0 1 N N N 39.788 -7.764  43.165 3.138  1.737  -1.185 H20 5VN 55 
5VN H21 H21 H 0 1 N N N 38.294 -9.349  44.277 3.453  0.569  1.634  H21 5VN 56 
5VN H22 H22 H 0 1 N N N 37.433 -7.541  43.433 1.633  1.136  2.485  H22 5VN 57 
5VN H23 H23 H 0 1 N N N 36.432 -6.443  41.590 -0.615 -0.268 2.641  H23 5VN 58 
5VN H24 H24 H 0 1 N N N 35.281 -7.775  41.946 -0.807 1.478  2.468  H24 5VN 59 
5VN H25 H25 H 0 1 N N N 37.659 -7.996  40.066 -1.103 1.358  0.098  H25 5VN 60 
5VN H26 H26 H 0 1 N N N 35.061 -9.783  42.092 -1.382 -2.382 0.882  H26 5VN 61 
5VN H27 H27 H 0 1 N N N 34.206 -9.900  40.517 0.184  -2.712 0.104  H27 5VN 62 
5VN H28 H28 H 0 1 N N N 35.128 -11.308 41.145 0.117  -1.741 1.595  H28 5VN 63 
5VN H29 H29 H 0 1 N N N 36.047 -11.345 38.954 -1.350 -0.214 -2.146 H29 5VN 64 
5VN H30 H30 H 0 1 N N N 37.470 -10.318 38.569 -0.919 -1.914 -1.912 H30 5VN 65 
5VN H31 H31 H 0 1 N N N 34.529 -9.528  38.182 -3.335 -1.563 -1.999 H31 5VN 66 
5VN H32 H32 H 0 1 N N N 35.676 -10.010 36.887 -2.871 -2.159 -0.400 H32 5VN 67 
5VN H33 H33 H 0 1 N N N 37.217 -8.179  37.725 -3.041 0.786  -1.133 H33 5VN 68 
5VN H34 H34 H 0 1 N N N 34.357 -6.762  40.591 -2.790 -1.852 1.445  H34 5VN 69 
5VN H35 H35 H 0 1 N N N 33.829 -6.716  38.875 -2.332 -0.747 2.763  H35 5VN 70 
5VN H36 H36 H 0 1 N N N 33.972 -8.290  39.728 -4.024 -0.827 2.216  H36 5VN 71 
5VN H37 H37 H 0 1 N N N 37.457 -6.044  38.840 -2.781 1.729  2.415  H37 5VN 72 
5VN H38 H38 H 0 1 N N N 36.226 -5.477  40.019 -3.020 2.350  0.762  H38 5VN 73 
5VN H39 H39 H 0 1 N N N 35.905 -4.202  37.977 -5.017 0.626  2.319  H39 5VN 74 
5VN H40 H40 H 0 1 N N N 34.564 -5.394  38.071 -5.134 2.364  2.072  H40 5VN 75 
5VN H41 H41 H 0 1 N N N 37.191 -5.849  36.605 -5.290 2.106  -0.333 H41 5VN 76 
5VN H42 H42 H 0 1 N N N 35.824 -4.235  35.604 -7.283 1.789  0.909  H42 5VN 77 
5VN H43 H43 H 0 1 N N N 33.643 -6.908  37.318 -6.578 -1.296 -0.158 H43 5VN 78 
5VN H44 H44 H 0 1 N N N 33.825 -6.738  35.540 -5.026 -2.145 -0.354 H44 5VN 79 
5VN H45 H45 H 0 1 N N N 33.776 -8.372  36.285 -5.395 -1.307 1.173  H45 5VN 80 
5VN H46 H46 H 0 1 N N N 36.003 -8.972  35.272 -4.980 1.066  -2.349 H46 5VN 81 
5VN H47 H47 H 0 1 N N N 37.329 -7.762  35.349 -4.999 -0.706 -2.510 H47 5VN 82 
5VN H48 H48 H 0 1 N N N 36.097 -7.619  33.383 -7.165 0.241  -2.850 H48 5VN 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5VN O13 C12 SING N N 1  
5VN C12 C10 SING N N 2  
5VN O9  C7  SING N N 3  
5VN C11 C10 SING N N 4  
5VN C10 C7  SING N N 5  
5VN C10 C1  SING N N 6  
5VN C7  C6  SING N N 7  
5VN C1  C19 SING N N 8  
5VN C1  C3  SING N N 9  
5VN C19 C18 SING N N 10 
5VN C6  C5  SING N N 11 
5VN C18 C16 SING N N 12 
5VN C5  C3  SING N N 13 
5VN C3  C4  SING N N 14 
5VN C3  C14 SING N N 15 
5VN C21 C20 SING N N 16 
5VN C14 C16 SING N N 17 
5VN C14 C24 SING N N 18 
5VN C16 C17 SING N N 19 
5VN C16 C20 SING N N 20 
5VN C20 C34 SING N N 21 
5VN C20 C22 SING N N 22 
5VN C34 C31 SING N N 23 
5VN O33 C31 SING N N 24 
5VN C24 C23 SING N N 25 
5VN C31 C27 SING N N 26 
5VN C22 C23 DOUB N N 27 
5VN C22 C25 SING N N 28 
5VN C40 C25 SING N N 29 
5VN C40 C37 SING N N 30 
5VN C25 C27 SING N N 31 
5VN C27 C28 SING N N 32 
5VN C27 C35 SING N N 33 
5VN C28 O29 DOUB N N 34 
5VN C28 O30 SING N N 35 
5VN C39 C37 SING N N 36 
5VN C36 C37 SING N N 37 
5VN C36 C35 SING N N 38 
5VN C37 C38 SING N N 39 
5VN C21 H1  SING N N 40 
5VN C21 H2  SING N N 41 
5VN C21 H3  SING N N 42 
5VN C34 H4  SING N N 43 
5VN C34 H5  SING N N 44 
5VN C31 H6  SING N N 45 
5VN O33 H7  SING N N 46 
5VN O30 H8  SING N N 47 
5VN C35 H9  SING N N 48 
5VN C35 H10 SING N N 49 
5VN C36 H11 SING N N 50 
5VN C36 H12 SING N N 51 
5VN C38 H13 SING N N 52 
5VN C38 H14 SING N N 53 
5VN C38 H15 SING N N 54 
5VN C39 H16 SING N N 55 
5VN C39 H17 SING N N 56 
5VN C39 H18 SING N N 57 
5VN C40 H19 SING N N 58 
5VN C40 H20 SING N N 59 
5VN C25 H21 SING N N 60 
5VN C23 H22 SING N N 61 
5VN C24 H23 SING N N 62 
5VN C24 H24 SING N N 63 
5VN C14 H25 SING N N 64 
5VN C17 H26 SING N N 65 
5VN C17 H27 SING N N 66 
5VN C17 H28 SING N N 67 
5VN C18 H29 SING N N 68 
5VN C18 H30 SING N N 69 
5VN C19 H31 SING N N 70 
5VN C19 H32 SING N N 71 
5VN C1  H33 SING N N 72 
5VN C4  H34 SING N N 73 
5VN C4  H35 SING N N 74 
5VN C4  H36 SING N N 75 
5VN C5  H37 SING N N 76 
5VN C5  H38 SING N N 77 
5VN C6  H39 SING N N 78 
5VN C6  H40 SING N N 79 
5VN C7  H41 SING N N 80 
5VN O9  H42 SING N N 81 
5VN C11 H43 SING N N 82 
5VN C11 H44 SING N N 83 
5VN C11 H45 SING N N 84 
5VN C12 H46 SING N N 85 
5VN C12 H47 SING N N 86 
5VN O13 H48 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5VN InChI            InChI                1.03  
"InChI=1S/C30H48O5/c1-25(2)13-14-30(24(34)35)19(15-25)18-7-8-21-26(3)11-10-22(32)27(4,17-31)20(26)9-12-28(21,5)29(18,6)16-23(30)33/h7,19-23,31-33H,8-17H2,1-6H3,(H,34,35)/t19-,20+,21+,22-,23+,26-,27-,28+,29+,30+/m0/s1" 
5VN InChIKey         InChI                1.03  FABOBEOYNMHSHB-UAWZMHPWSA-N 
5VN SMILES_CANONICAL CACTVS               3.385 "CC1(C)CC[C@@]2([C@H](O)C[C@]3(C)C(=CC[C@@H]4[C@@]5(C)CC[C@H](O)[C@@](C)(CO)[C@@H]5CC[C@@]34C)[C@@H]2C1)C(O)=O" 
5VN SMILES           CACTVS               3.385 "CC1(C)CC[C]2([CH](O)C[C]3(C)C(=CC[CH]4[C]5(C)CC[CH](O)[C](C)(CO)[CH]5CC[C]34C)[CH]2C1)C(O)=O" 
5VN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@]12CC[C@@H]([C@@]([C@@H]1CC[C@@]3([C@@H]2CC=C4[C@]3(C[C@H]([C@@]5([C@H]4CC(CC5)(C)C)C(=O)O)O)C)C)(C)CO)O" 
5VN SMILES           "OpenEye OEToolkits" 2.0.4 "CC1(CCC2(C(C1)C3=CCC4C5(CCC(C(C5CCC4(C3(CC2O)C)C)(C)CO)O)C)C(=O)O)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5VN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 
"(4~{a}~{R},5~{R},6~{a}~{R},6~{a}~{S},6~{b}~{R},8~{a}~{R},9~{R},10~{S},12~{a}~{R},14~{b}~{S})-9-(hydroxymethyl)-2,2,6~{a},6~{b},9,12~{a}-hexamethyl-5,10-bis(oxidanyl)-1,3,4,5,6,6~{a},7,8,8~{a},10,11,12,13,14~{b}-tetradecahydropicene-4~{a}-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5VN "Create component" 2015-12-09 EBI  
5VN "Initial release"  2016-06-29 RCSB 
# 
