data_56N
#

_chem_comp.id                                   56N
_chem_comp.name                                 "phenyl beta-D-galactopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H16 O6"
_chem_comp.mon_nstd_parent_comp_id              GAL
_chem_comp.pdbx_synonyms                        "phenyl beta-D-galactoside; phenyl D-galactoside; phenyl galactoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-08-05
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       256.252
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    56N
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5D21
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  56N  "phenyl beta-D-galactoside"  PDB  ?  
2  56N  "phenyl D-galactoside"       PDB  ?  
3  56N  "phenyl galactoside"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
56N  O2     O2     O  0  1  N  N  N   1.999  -16.825  -51.229  -1.264   2.811   0.502  O2     56N   1  
56N  O3     O3     O  0  1  N  N  N   2.308  -18.537  -48.921  -3.819   1.538   0.314  O3     56N   2  
56N  O4     O4     O  0  1  N  N  N   0.535  -17.488  -47.286  -2.996  -0.587  -1.312  O4     56N   3  
56N  O5     O5     O  0  1  N  N  N  -1.196  -16.558  -49.546  -0.352  -0.656  -0.257  O5     56N   4  
56N  C1     C1     C  0  1  N  N  S  -0.318  -16.563  -50.652  -0.165   0.673   0.233  C1     56N   5  
56N  C2     C2     C  0  1  N  N  R   1.080  -16.864  -50.148  -1.426   1.498  -0.039  C2     56N   6  
56N  C3     C3     C  0  1  N  N  S   1.050  -18.225  -49.486  -2.626   0.815   0.624  C3     56N   7  
56N  C4     C4     C  0  1  N  N  R   0.026  -18.254  -48.371  -2.742  -0.617   0.094  C4     56N   8  
56N  C5     C5     C  0  1  N  N  R  -1.333  -17.782  -48.866  -1.431  -1.360   0.361  C5     56N   9  
56N  C6     C6     C  0  1  N  N  N  -2.324  -17.634  -47.732  -1.517  -2.773  -0.219  C6     56N  10  
56N  O6     O6     O  0  1  N  N  N  -3.592  -17.296  -48.263  -0.340  -3.504   0.130  O6     56N  11  
56N  O1     "O1'"  O  0  1  N  N  N  -0.310  -15.310  -51.272   0.949   1.274  -0.430  O1     56N  12  
56N  "C1'"  "C1'"  C  0  1  Y  N  N  -1.344  -15.139  -52.210   2.171   0.723  -0.205  "C1'"  56N  13  
56N  "C2'"  "C2'"  C  0  1  Y  N  N  -2.225  -16.163  -52.563   3.297   1.256  -0.816  "C2'"  56N  14  
56N  "C3'"  "C3'"  C  0  1  Y  N  N  -3.221  -15.919  -53.498   4.538   0.694  -0.585  "C3'"  56N  15  
56N  "C4'"  "C4'"  C  0  1  Y  N  N  -3.331  -14.655  -54.073   4.658  -0.398   0.254  "C4'"  56N  16  
56N  "C5'"  "C5'"  C  0  1  Y  N  N  -2.455  -13.642  -53.718   3.538  -0.931   0.864  "C5'"  56N  17  
56N  "C6'"  "C6'"  C  0  1  Y  N  N  -1.462  -13.885  -52.787   2.296  -0.369   0.642  "C6'"  56N  18  
56N  HO2    H1     H  0  1  N  Y  N   2.873  -17.014  -50.909  -0.518   3.300   0.129  HO2    56N  19  
56N  HO3    H2     H  0  1  N  Y  N   2.268  -19.393  -48.511  -3.812   2.457   0.615  HO3    56N  20  
56N  HO4    H3     H  0  1  N  Y  N  -0.093  -17.492  -46.573  -3.811  -0.126  -1.555  HO4    56N  21  
56N  H1     H4     H  0  1  N  N  N  -0.612  -17.344  -51.368   0.024   0.642   1.306  H1     56N  22  
56N  H2     H5     H  0  1  N  N  N   1.353  -16.111  -49.394  -1.592   1.565  -1.114  H2     56N  23  
56N  H3     H6     H  0  1  N  N  N   0.775  -18.979  -50.239  -2.483   0.795   1.704  H3     56N  24  
56N  H4     H7     H  0  1  N  N  N  -0.084  -19.299  -48.047  -3.561  -1.128   0.601  H4     56N  25  
56N  H5     H8     H  0  1  N  N  N  -1.722  -18.542  -49.559  -1.258  -1.418   1.436  H5     56N  26  
56N  H61    H9     H  0  1  N  N  N  -2.397  -18.583  -47.181  -2.393  -3.279   0.187  H61    56N  27  
56N  H62    H10    H  0  1  N  N  N  -1.987  -16.839  -47.050  -1.601  -2.716  -1.304  H62    56N  28  
56N  HO6    H11    H  0  1  N  Y  N  -4.218  -17.202  -47.554  -0.326  -4.411  -0.206  HO6    56N  29  
56N  H12    H12    H  0  1  N  N  N  -2.132  -17.139  -52.111   3.203   2.109  -1.472  H12    56N  30  
56N  H13    H13    H  0  1  N  N  N  -3.907  -16.705  -53.778   5.414   1.108  -1.061  H13    56N  31  
56N  H14    H14    H  0  1  N  N  N  -4.105  -14.463  -54.801   5.629  -0.839   0.429  H14    56N  32  
56N  H15    H15    H  0  1  N  N  N  -2.548  -12.664  -54.168   3.635  -1.784   1.519  H15    56N  33  
56N  H16    H16    H  0  1  N  N  N  -0.778  -13.097  -52.509   1.421  -0.786   1.119  H16    56N  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
56N  "C4'"  "C5'"  DOUB  Y  N   1  
56N  "C4'"  "C3'"  SING  Y  N   2  
56N  "C5'"  "C6'"  SING  Y  N   3  
56N  "C3'"  "C2'"  DOUB  Y  N   4  
56N  "C6'"  "C1'"  DOUB  Y  N   5  
56N  "C2'"  "C1'"  SING  Y  N   6  
56N  "C1'"  O1     SING  N  N   7  
56N  O1     C1     SING  N  N   8  
56N  O2     C2     SING  N  N   9  
56N  C1     C2     SING  N  N  10  
56N  C1     O5     SING  N  N  11  
56N  C2     C3     SING  N  N  12  
56N  O5     C5     SING  N  N  13  
56N  C3     O3     SING  N  N  14  
56N  C3     C4     SING  N  N  15  
56N  C5     C4     SING  N  N  16  
56N  C5     C6     SING  N  N  17  
56N  C4     O4     SING  N  N  18  
56N  O6     C6     SING  N  N  19  
56N  O2     HO2    SING  N  N  20  
56N  O3     HO3    SING  N  N  21  
56N  O4     HO4    SING  N  N  22  
56N  C1     H1     SING  N  N  23  
56N  C2     H2     SING  N  N  24  
56N  C3     H3     SING  N  N  25  
56N  C4     H4     SING  N  N  26  
56N  C5     H5     SING  N  N  27  
56N  C6     H61    SING  N  N  28  
56N  C6     H62    SING  N  N  29  
56N  O6     HO6    SING  N  N  30  
56N  "C2'"  H12    SING  N  N  31  
56N  "C3'"  H13    SING  N  N  32  
56N  "C4'"  H14    SING  N  N  33  
56N  "C5'"  H15    SING  N  N  34  
56N  "C6'"  H16    SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
56N  SMILES            ACDLabs               12.01  "OC1C(OC(C(O)C1O)CO)Oc2ccccc2"  
56N  InChI             InChI                 1.03   "InChI=1S/C12H16O6/c13-6-8-9(14)10(15)11(16)12(18-8)17-7-4-2-1-3-5-7/h1-5,8-16H,6H2/t8-,9+,10+,11-,12-/m1/s1"  
56N  InChIKey          InChI                 1.03   NEZJDVYDSZTRFS-YBXAARCKSA-N  
56N  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](Oc2ccccc2)[C@H](O)[C@@H](O)[C@H]1O"  
56N  SMILES            CACTVS                3.385  "OC[CH]1O[CH](Oc2ccccc2)[CH](O)[CH](O)[CH]1O"  
56N  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "c1ccc(cc1)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O"  
56N  SMILES            "OpenEye OEToolkits"  1.9.2  "c1ccc(cc1)OC2C(C(C(C(O2)CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
56N  "SYSTEMATIC NAME"  ACDLabs               12.01  "phenyl beta-D-galactopyranoside"  
56N  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-phenoxy-oxane-3,4,5-triol"  
#
_pdbx_chem_comp_related.comp_id            56N
_pdbx_chem_comp_related.related_comp_id    GAL
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  56N  C1   GAL  C1   "Carbohydrate core"  
 2  56N  C2   GAL  C2   "Carbohydrate core"  
 3  56N  C3   GAL  C3   "Carbohydrate core"  
 4  56N  C4   GAL  C4   "Carbohydrate core"  
 5  56N  C5   GAL  C5   "Carbohydrate core"  
 6  56N  C6   GAL  C6   "Carbohydrate core"  
 7  56N  O1   GAL  O1   "Carbohydrate core"  
 8  56N  O2   GAL  O2   "Carbohydrate core"  
 9  56N  O3   GAL  O3   "Carbohydrate core"  
10  56N  O4   GAL  O4   "Carbohydrate core"  
11  56N  O5   GAL  O5   "Carbohydrate core"  
12  56N  O6   GAL  O6   "Carbohydrate core"  
13  56N  HO2  GAL  HO2  "Carbohydrate core"  
14  56N  H62  GAL  H62  "Carbohydrate core"  
15  56N  HO6  GAL  HO6  "Carbohydrate core"  
16  56N  HO3  GAL  HO3  "Carbohydrate core"  
17  56N  HO4  GAL  HO4  "Carbohydrate core"  
18  56N  H1   GAL  H1   "Carbohydrate core"  
19  56N  H2   GAL  H2   "Carbohydrate core"  
20  56N  H3   GAL  H3   "Carbohydrate core"  
21  56N  H4   GAL  H4   "Carbohydrate core"  
22  56N  H5   GAL  H5   "Carbohydrate core"  
23  56N  H61  GAL  H61  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
56N  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
56N  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
56N  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
56N  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
56N  "Other modification"        2015-08-05  EBI   
56N  "Initial release"           2015-11-25  RCSB  
56N  "Other modification"        2020-07-03  RCSB  
56N  "Modify parent residue"     2020-07-17  RCSB  
56N  "Modify synonyms"           2020-07-17  RCSB  
56N  "Modify internal type"      2020-07-17  RCSB  
56N  "Modify linking type"       2020-07-17  RCSB  
56N  "Modify atom id"            2020-07-17  RCSB  
56N  "Modify component atom id"  2020-07-17  RCSB  
56N  "Modify leaving atom flag"  2020-07-17  RCSB  
##
