data_51N
#

_chem_comp.id                                   51N
_chem_comp.name                                 "5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-1-O-phosphono-alpha-D-ribofuranose"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H13 O14 P3"
_chem_comp.mon_nstd_parent_comp_id              RIB
_chem_comp.pdbx_synonyms                        
;1'-ALPHA-PHOSPHORIBOSYL-5'-PYROPHOSPHORIC ACID;
5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-1-O-phosphono-alpha-D-ribose;
5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-1-O-phosphono-D-ribose;
5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-1-O-phosphono-ribose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-06-15
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       390.070
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    51N
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5C1R
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  51N  "1'-ALPHA-PHOSPHORIBOSYL-5'-PYROPHOSPHORIC ACID"                          PDB  ?  
2  51N  "5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-1-O-phosphono-alpha-D-ribose"  PDB  ?  
3  51N  "5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-1-O-phosphono-D-ribose"        PDB  ?  
4  51N  "5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-1-O-phosphono-ribose"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
51N  C1   C01  C  0  1  N  N  R  -19.034  29.356  18.360   3.187   0.526  -0.426  C1   51N   1  
51N  O4   O02  O  0  1  N  N  N  -18.408  29.570  16.946   1.775   0.314  -0.324  O4   51N   2  
51N  C4   C03  C  0  1  N  N  R  -19.243  28.604  16.084   1.136   1.497   0.183  C4   51N   3  
51N  C3   C04  C  0  1  N  N  S  -20.453  28.694  16.576   2.093   2.660  -0.180  C3   51N   4  
51N  C2   C05  C  0  1  N  N  R  -20.207  28.811  18.211   3.476   1.977   0.013  C2   51N   5  
51N  C5   C06  C  0  1  N  N  N  -19.154  29.105  14.637  -0.223   1.697  -0.489  C5   51N   6  
51N  O1   O07  O  0  1  N  N  N  -18.135  28.463  19.022   3.878  -0.386   0.431  O1   51N   7  
51N  O08  O08  O  0  1  N  N  N  -16.426  27.982  20.804   5.239  -2.527   1.122  O08  51N   8  
51N  P09  P09  P  0  1  N  N  N  -17.187  29.109  20.159   4.396  -1.829  -0.059  P09  51N   9  
51N  O10  O10  O  0  1  N  N  N  -18.165  29.844  21.167   3.133  -2.754  -0.435  O10  51N  10  
51N  O11  O11  O  0  1  N  N  N  -16.103  29.954  19.639   5.259  -1.665  -1.250  O11  51N  11  
51N  O3   O12  O  0  1  N  N  N  -21.218  27.523  16.254   1.931   3.760   0.718  O3   51N  12  
51N  O2   O13  O  0  1  N  N  N  -20.257  27.468  18.713   3.879   2.023   1.383  O2   51N  13  
51N  O5   O14  O  0  1  N  N  N  -19.563  30.449  14.620  -1.126   0.680  -0.050  O5   51N  14  
51N  O15  O15  O  0  1  N  N  N  -19.412  33.987  15.212  -5.649   0.018   1.466  O15  51N  15  
51N  O16  O16  O  0  1  N  N  N  -20.595  32.492  13.571  -3.407  -0.596   0.236  O16  51N  16  
51N  P17  P17  P  0  1  N  N  N  -19.701  33.775  13.753  -4.953  -1.001   0.431  P17  51N  17  
51N  O18  O18  O  0  1  N  N  N  -20.503  34.992  13.170  -5.046  -2.500   1.010  O18  51N  18  
51N  O19  O19  O  0  1  N  N  N  -18.366  33.658  13.106  -5.649  -0.932  -0.873  O19  51N  19  
51N  P20  P20  P  0  1  N  N  N  -20.132  31.016  13.249  -2.651   0.584  -0.557  P20  51N  20  
51N  O21  O21  O  0  1  N  N  N  -19.105  30.966  12.198  -3.339   1.869  -0.301  O21  51N  21  
51N  O22  O22  O  0  1  N  N  N  -21.325  30.275  12.778  -2.674   0.268  -2.136  O22  51N  22  
51N  H1   H1   H  0  1  N  N  N  -19.076  30.324  18.881   3.510   0.380  -1.457  H1   51N  23  
51N  H4   H2   H  0  1  N  N  N  -18.821  27.590  16.152   1.018   1.428   1.265  H4   51N  24  
51N  H3   H3   H  0  1  N  N  N  -20.979  29.603  16.249   1.953   2.975  -1.214  H3   51N  25  
51N  H2   H4   H  0  1  N  N  N  -21.021  29.418  18.634   4.228   2.436  -0.629  H2   51N  26  
51N  H51  H5   H  0  1  N  N  N  -19.814  28.505  13.993  -0.621   2.676  -0.220  H51  51N  27  
51N  H52  H6   H  0  1  N  N  N  -18.118  29.025  14.277  -0.106   1.637  -1.571  H52  51N  28  
51N  H7   H7   H  0  1  N  N  N  -15.493  28.128  20.698   5.583  -3.402   0.896  H7   51N  29  
51N  H8   H8   H  0  1  N  N  N  -17.886  30.745  21.279   2.523  -2.905   0.300  H8   51N  30  
51N  HO3  H9   H  0  1  N  Y  N  -22.092  27.605  16.618   2.510   4.511   0.529  HO3  51N  31  
51N  HO2  H10  H  0  1  N  Y  N  -20.121  27.476  19.653   4.736   1.610   1.555  HO2  51N  32  
51N  H11  H11  H  0  1  N  N  N  -18.472  33.993  15.352  -5.243   0.025   2.343  H11  51N  33  
51N  H12  H12  H  0  1  N  N  N  -19.980  35.428  12.508  -5.950  -2.812   1.152  H12  51N  34  
51N  H13  H13  H  0  1  N  N  N  -21.163  29.934  11.906  -2.240  -0.562  -2.377  H13  51N  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
51N  O21  P20  DOUB  N  N   1  
51N  O22  P20  SING  N  N   2  
51N  O19  P17  DOUB  N  N   3  
51N  O18  P17  SING  N  N   4  
51N  P20  O16  SING  N  N   5  
51N  P20  O5   SING  N  N   6  
51N  O16  P17  SING  N  N   7  
51N  P17  O15  SING  N  N   8  
51N  O5   C5   SING  N  N   9  
51N  C5   C4   SING  N  N  10  
51N  C4   C3   SING  N  N  11  
51N  C4   O4   SING  N  N  12  
51N  O3   C3   SING  N  N  13  
51N  C3   C2   SING  N  N  14  
51N  O4   C1   SING  N  N  15  
51N  C2   C1   SING  N  N  16  
51N  C2   O2   SING  N  N  17  
51N  C1   O1   SING  N  N  18  
51N  O1   P09  SING  N  N  19  
51N  O11  P09  DOUB  N  N  20  
51N  P09  O08  SING  N  N  21  
51N  P09  O10  SING  N  N  22  
51N  C1   H1   SING  N  N  23  
51N  C4   H4   SING  N  N  24  
51N  C3   H3   SING  N  N  25  
51N  C2   H2   SING  N  N  26  
51N  C5   H51  SING  N  N  27  
51N  C5   H52  SING  N  N  28  
51N  O08  H7   SING  N  N  29  
51N  O10  H8   SING  N  N  30  
51N  O3   HO3  SING  N  N  31  
51N  O2   HO2  SING  N  N  32  
51N  O15  H11  SING  N  N  33  
51N  O18  H12  SING  N  N  34  
51N  O22  H13  SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
51N  SMILES            ACDLabs               12.01  "C1(OP(O)(O)=O)OC(C(C1O)O)COP(OP(O)(O)=O)(=O)O"  
51N  InChI             InChI                 1.03   "InChI=1S/C5H13O14P3/c6-3-2(1-16-22(14,15)19-21(11,12)13)17-5(4(3)7)18-20(8,9)10/h2-7H,1H2,(H,14,15)(H2,8,9,10)(H2,11,12,13)/t2-,3-,4-,5-/m1/s1"  
51N  InChIKey          InChI                 1.03   FPVTZUUYHCKWRL-TXICZTDVSA-N  
51N  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@@H](O)[C@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)O[P](O)(O)=O"  
51N  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)O[P](O)(O)=O"  
51N  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "C([C@@H]1[C@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)OP(=O)(O)OP(=O)(O)O"  
51N  SMILES            "OpenEye OEToolkits"  1.9.2  "C(C1C(C(C(O1)OP(=O)(O)O)O)O)OP(=O)(O)OP(=O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
51N  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-1-O-phosphono-alpha-D-ribofuranose"  
51N  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "[(2R,3S,4R,5R)-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl phosphono hydrogen phosphate"  
#
_pdbx_chem_comp_related.comp_id            51N
_pdbx_chem_comp_related.related_comp_id    RIB
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  51N  C1   RIB  C1   "Carbohydrate core"  
 2  51N  C4   RIB  C4   "Carbohydrate core"  
 3  51N  C3   RIB  C3   "Carbohydrate core"  
 4  51N  C2   RIB  C2   "Carbohydrate core"  
 5  51N  C5   RIB  C5   "Carbohydrate core"  
 6  51N  O4   RIB  O4   "Carbohydrate core"  
 7  51N  O1   RIB  O1   "Carbohydrate core"  
 8  51N  O3   RIB  O3   "Carbohydrate core"  
 9  51N  O2   RIB  O2   "Carbohydrate core"  
10  51N  O5   RIB  O5   "Carbohydrate core"  
11  51N  H1   RIB  H1   "Carbohydrate core"  
12  51N  HO2  RIB  HO2  "Carbohydrate core"  
13  51N  H4   RIB  H4   "Carbohydrate core"  
14  51N  H3   RIB  H3   "Carbohydrate core"  
15  51N  H2   RIB  H2   "Carbohydrate core"  
16  51N  H51  RIB  H51  "Carbohydrate core"  
17  51N  H52  RIB  H52  "Carbohydrate core"  
18  51N  HO3  RIB  HO3  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
51N  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
51N  "CARBOHYDRATE RING"                    furanose  PDB  ?  
51N  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
51N  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
51N  "Create component"          2015-06-15  RCSB  
51N  "Initial release"           2016-07-20  RCSB  
51N  "Other modification"        2020-07-03  RCSB  
51N  "Modify parent residue"     2020-07-17  RCSB  
51N  "Modify synonyms"           2020-07-17  RCSB  
51N  "Modify internal type"      2020-07-17  RCSB  
51N  "Modify linking type"       2020-07-17  RCSB  
51N  "Modify atom id"            2020-07-17  RCSB  
51N  "Modify component atom id"  2020-07-17  RCSB  
51N  "Modify leaving atom flag"  2020-07-17  RCSB  
##
